CmaCh20G006480 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G006480
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCalcium-binding EF-hand protein
LocationCma_Chr20 : 2998184 .. 2998552 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGAAAGGGTGGTGGTGGAGGTGGAGGTGGTGGTGGTTTCCACGATCTGCTGCCGGTAATGGCGGAGAAATTGGGAGGAGAAGGGCTGATAAACGAGCTCTGTAATGGGTTTCAGATGCTGATGGACAAAGAGAAGGGCGTGATCACTTTAGAGAGCCTTAGGAGAAACTCTTCCCTTTTGGGTTTGTGGGATATGGGAGAGGAGGAGCTTGTGAGCATGATGAGGGAAGGGGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGCGTTTTGATGTTCAGATTAAGCCCTGAATTGATGGAAGAGTCTCTGTATTGGCTTGATGACGCTTTGGAAAAGGAGTTTAAAGCATCTTGA

mRNA sequence

ATGGCGAGAAAGGGTGGTGGTGGAGGTGGAGGTGGTGGTGGTTTCCACGATCTGCTGCCGGTAATGGCGGAGAAATTGGGAGGAGAAGGGCTGATAAACGAGCTCTGTAATGGGTTTCAGATGCTGATGGACAAAGAGAAGGGCGTGATCACTTTAGAGAGCCTTAGGAGAAACTCTTCCCTTTTGGGTTTGTGGGATATGGGAGAGGAGGAGCTTGTGAGCATGATGAGGGAAGGGGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGCGTTTTGATGTTCAGATTAAGCCCTGAATTGATGGAAGAGTCTCTGTATTGGCTTGATGACGCTTTGGAAAAGGAGTTTAAAGCATCTTGA

Coding sequence (CDS)

ATGGCGAGAAAGGGTGGTGGTGGAGGTGGAGGTGGTGGTGGTTTCCACGATCTGCTGCCGGTAATGGCGGAGAAATTGGGAGGAGAAGGGCTGATAAACGAGCTCTGTAATGGGTTTCAGATGCTGATGGACAAAGAGAAGGGCGTGATCACTTTAGAGAGCCTTAGGAGAAACTCTTCCCTTTTGGGTTTGTGGGATATGGGAGAGGAGGAGCTTGTGAGCATGATGAGGGAAGGGGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGCGTTTTGATGTTCAGATTAAGCCCTGAATTGATGGAAGAGTCTCTGTATTGGCTTGATGACGCTTTGGAAAAGGAGTTTAAAGCATCTTGA

Protein sequence

MARKGGGGGGGGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEFKAS
Homology
[Close]
BLAST of CmaCh20G006480 vs. Swiss-Prot
Match: PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.4e-32
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSS-LLGLWDMGEEELV 74
           F D  P MA KLGGEGLI E+C GF++LMDK+KGVIT ESLRRN+S +LGL D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 75  SMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 120
            M+ EGD D DGALNQMEFCVLMFRLSPELME S   + + +E+EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]
BLAST of CmaCh20G006480 vs. Swiss-Prot
Match: KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 5.3e-30
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 74
           + D+LPVMAEK+  E  ++ELC GF +L D E+ +IT ESLRRNS +LG+  M +E+   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 75  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 119
           M+REGDLDGDGALNQ EFCVLM RLSPE+ME++  WL+ AL +E
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]
BLAST of CmaCh20G006480 vs. Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.8e-08
Identity = 30/82 (36.59%), Postives = 49/82 (59.76%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 74
           F+D L VM +K+  +    E+   F++  D E G I+ ++L+R ++ LG   + +EEL  
Sbjct: 86  FNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGE-SLTDEELQE 145

Query: 75  MMREGDLDGDGALNQMEFCVLM 97
           M+ E D DGDG +N+ EF  +M
Sbjct: 146 MIDEADRDGDGEVNEEEFLKIM 166

[Close]
BLAST of CmaCh20G006480 vs. Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-07
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 1 

Query: 9   GGGGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMG 68
           G G   F D L VM +K+  +    E+   F++  D E G I+ ++L+R +  LG  ++ 
Sbjct: 80  GTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGE-NLS 139

Query: 69  EEELVSMMREGDLDGDGALNQMEFCVLMFRLS 101
           +EEL  M+ E D DGDG +N+ EF  +M + S
Sbjct: 140 DEELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]
BLAST of CmaCh20G006480 vs. Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-07
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 1 

Query: 9   GGGGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMG 68
           G G   F D L VM +K+  +    E+   F++  D E G I+ ++L+R +  LG  ++ 
Sbjct: 80  GTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGE-NLT 139

Query: 69  EEELVSMMREGDLDGDGALNQMEFCVLMFRLS 101
           +EEL  M+ E D DGDG +N+ EF  +M + S
Sbjct: 140 DEELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]
BLAST of CmaCh20G006480 vs. TrEMBL
Match: A0A0A0KCV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120930 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.7e-44
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 1 

Query: 11  GGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEE 70
           GG  F DLLPVMAEKLGGEGLI ELCNGF++LMDKEKGVITLESLRRNS LLG+ DM EE
Sbjct: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRDMAEE 64

Query: 71  ELVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 120
           EL+SMMREGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 65  ELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]
BLAST of CmaCh20G006480 vs. TrEMBL
Match: B9I6J5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14730g PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-42
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 74
           F DLLPVMA KLGGEGLINELCNGFQ+LMDK++GVIT+ESLRRNSS LGL D+ ++EL S
Sbjct: 10  FEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLRRNSSFLGLQDLSDDELAS 69

Query: 75  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEFKA 122
           M++EGDLDGDGALNQMEFCVLMFRLSPELM+ES +WL++A E+E K+
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPELMQESRFWLEEAFEEELKS 116

[Close]
BLAST of CmaCh20G006480 vs. TrEMBL
Match: C6T3M0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 12  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 71
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 72  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 119
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmaCh20G006480 vs. TrEMBL
Match: A0A0B2QRZ1_GLYSO (Calcium-binding protein PBP1 OS=Glycine soja GN=glysoja_020799 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 12  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 71
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 72  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 119
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmaCh20G006480 vs. TrEMBL
Match: I1LRV1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G103600 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.6e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 12  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 71
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 72  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 119
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmaCh20G006480 vs. TAIR10
Match: AT4G27280.1 (AT4G27280.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 144.4 bits (363), Expect = 4.5e-35
Identity = 70/106 (66.04%), Postives = 87/106 (82.08%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRN-SSLLGLWDMGEEELV 74
           FHD LP MA  LGGEGLI ELCNGF++LMD+EKGVIT ESLRRN +++LGL D+ +E++ 
Sbjct: 19  FHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDVR 78

Query: 75  SMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 120
            M++EGD D DGALNQMEFCVLMFRLSP+LME S   + + +E+EF
Sbjct: 79  CMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]
BLAST of CmaCh20G006480 vs. TAIR10
Match: AT5G54490.1 (AT5G54490.1 pinoid-binding protein 1)

HSP 1 Score: 138.7 bits (348), Expect = 2.5e-33
Identity = 68/106 (64.15%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSS-LLGLWDMGEEELV 74
           F D  P MA KLGGEGLI E+C GF++LMDK+KGVIT ESLRRN+S +LGL D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 75  SMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 120
            M+ EGD D DGALNQMEFCVLMFRLSPELME S   + + +E+EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]
BLAST of CmaCh20G006480 vs. TAIR10
Match: AT2G46600.1 (AT2G46600.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 131.7 bits (330), Expect = 3.0e-31
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 74
           + D+LPVMAEK+  E  ++ELC GF +L D E+ +IT ESLRRNS +LG+  M +E+   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 75  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 119
           M+REGDLDGDGALNQ EFCVLM RLSPE+ME++  WL+ AL +E
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]
BLAST of CmaCh20G006480 vs. NCBI nr
Match: gi|449444586|ref|XP_004140055.1| (PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.1e-43
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 1 

Query: 11  GGGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEE 70
           GG  F DLLPVMAEKLGGEGLI ELCNGF++LMDKEKGVITLESLRRNS LLG+ DM EE
Sbjct: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRDMAEE 64

Query: 71  ELVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEF 120
           EL+SMMREGDLDGDGALNQMEFCVLMFRLSP+LM+ SLYWL  ALE EF
Sbjct: 65  ELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]
BLAST of CmaCh20G006480 vs. NCBI nr
Match: gi|743910034|ref|XP_011048514.1| (PREDICTED: calcium-binding protein PBP1-like [Populus euphratica])

HSP 1 Score: 181.0 bits (458), Expect = 1.2e-42
Identity = 84/107 (78.50%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 74
           F DLLPVMA KLGGEGLINELCNGFQ+LMDK++GVIT+ESLRRNSS LGL D+ ++EL S
Sbjct: 10  FEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLRRNSSFLGLQDLSDDELAS 69

Query: 75  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEFKA 122
           M++EGDLDGDGALNQMEFCVLMFRLSPELM+ES +WL+DA E+E K+
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPELMQESRFWLEDAFEEELKS 116

[Close]
BLAST of CmaCh20G006480 vs. NCBI nr
Match: gi|224124692|ref|XP_002319397.1| (hypothetical protein POPTR_0013s14730g [Populus trichocarpa])

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-42
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 15  FHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEELVS 74
           F DLLPVMA KLGGEGLINELCNGFQ+LMDK++GVIT+ESLRRNSS LGL D+ ++EL S
Sbjct: 10  FEDLLPVMANKLGGEGLINELCNGFQLLMDKDRGVITMESLRRNSSFLGLQDLSDDELAS 69

Query: 75  MMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKEFKA 122
           M++EGDLDGDGALNQMEFCVLMFRLSPELM+ES +WL++A E+E K+
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPELMQESRFWLEEAFEEELKS 116

[Close]
BLAST of CmaCh20G006480 vs. NCBI nr
Match: gi|351727699|ref|NP_001236402.1| (uncharacterized protein LOC100527206 [Glycine max])

HSP 1 Score: 175.6 bits (444), Expect = 5.2e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 12  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 71
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 72  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 119
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]
BLAST of CmaCh20G006480 vs. NCBI nr
Match: gi|734380494|gb|KHN22869.1| (Calcium-binding protein PBP1 [Glycine soja])

HSP 1 Score: 175.6 bits (444), Expect = 5.2e-41
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 

Query: 12  GGGFHDLLPVMAEKLGGEGLINELCNGFQMLMDKEKGVITLESLRRNSSLLGLWDMGEEE 71
           G GF DLLPVMA KLGGEGL+ ELCNGF++L+DKEKGVITLESLRRN++LLGL D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 72  LVSMMREGDLDGDGALNQMEFCVLMFRLSPELMEESLYWLDDALEKE 119
           LVSMMREGDLDGDGAL QMEFCVLMFRLSP+LMEES +WL++AL+ E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

The following BLAST results are available for this feature:
BLAST of CmaCh20G006480 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PBP1_ARATH4.4e-3264.15Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1[more]
KIC_ARATH5.3e-3059.62Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2[more]
CETN1_MOUSE9.8e-0836.59Centrin-1 OS=Mus musculus GN=Cetn1 PE=1 SV=1[more]
CETN2_BOVIN3.7e-0735.87Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
CETN2_MOUSE6.4e-0735.87Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
BLAST of CmaCh20G006480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCV2_CUCSA7.7e-4484.40Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120930 PE=4 SV=1[more]
B9I6J5_POPTR2.5e-4277.57Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14730g PE=4 SV=1[more]
C6T3M0_SOYBN3.6e-4179.44Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A0B2QRZ1_GLYSO3.6e-4179.44Calcium-binding protein PBP1 OS=Glycine soja GN=glysoja_020799 PE=4 SV=1[more]
I1LRV1_SOYBN3.6e-4179.44Uncharacterized protein OS=Glycine max GN=GLYMA_12G103600 PE=4 SV=1[more]
BLAST of CmaCh20G006480 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G27280.14.5e-3566.04 Calcium-binding EF-hand family protein[more]
AT5G54490.12.5e-3364.15 pinoid-binding protein 1[more]
AT2G46600.13.0e-3159.62 Calcium-binding EF-hand family protein[more]
BLAST of CmaCh20G006480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444586|ref|XP_004140055.1|1.1e-4384.40PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus][more]
gi|743910034|ref|XP_011048514.1|1.2e-4278.50PREDICTED: calcium-binding protein PBP1-like [Populus euphratica][more]
gi|224124692|ref|XP_002319397.1|3.6e-4277.57hypothetical protein POPTR_0013s14730g [Populus trichocarpa][more]
gi|351727699|ref|NP_001236402.1|5.2e-4179.44uncharacterized protein LOC100527206 [Glycine max][more]
gi|734380494|gb|KHN22869.1|5.2e-4179.44Calcium-binding protein PBP1 [Glycine soja][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0008199 ferric iron binding
molecular_function GO:0004322 ferroxidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G006480.1CmaCh20G006480.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13833EF-hand_8coord: 46..98
score: 2.3
IPR002048EF-hand domainSMARTSM00054efh_1coord: 71..99
score: 0.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 67..102
score: 10
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 15..99
score: 4.1
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 30..110
score: 4.05
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 80..92
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 15..122
score: 7.0
NoneNo IPR availablePANTHERPTHR10891:SF585SUBFAMILY NOT NAMEDcoord: 15..122
score: 7.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G006480ClCG02G011280Watermelon (Charleston Gray)cmawcgB487
CmaCh20G006480CmoCh20G005980Cucurbita moschata (Rifu)cmacmoB552
CmaCh20G006480CmoCh02G001380Cucurbita moschata (Rifu)cmacmoB561
CmaCh20G006480Lsi10G008480Bottle gourd (USVL1VR-Ls)cmalsiB505
CmaCh20G006480Cp4.1LG16g04730Cucurbita pepo (Zucchini)cmacpeB562
CmaCh20G006480Cla97C02G036990Watermelon (97103) v2cmawmbB574
CmaCh20G006480Bhi10G000942Wax gourdcmawgoB0688
CmaCh20G006480Carg13555Silver-seed gourdcarcmaB0041
CmaCh20G006480Carg03155Silver-seed gourdcarcmaB0472
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh20G006480CmaCh02G001360Cucurbita maxima (Rimu)cmacmaB477
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G006480Melon (DHL92) v3.6.1cmamedB586
CmaCh20G006480Melon (DHL92) v3.6.1cmamedB590
CmaCh20G006480Silver-seed gourdcarcmaB1215
CmaCh20G006480Cucumber (Chinese Long) v3cmacucB0684
CmaCh20G006480Watermelon (97103) v2cmawmbB582
CmaCh20G006480Watermelon (97103) v2cmawmbB592
CmaCh20G006480Wax gourdcmawgoB0681
CmaCh20G006480Cucurbita maxima (Rimu)cmacmaB157
CmaCh20G006480Cucurbita maxima (Rimu)cmacmaB443
CmaCh20G006480Cucumber (Gy14) v1cgycmaB0408
CmaCh20G006480Cucurbita moschata (Rifu)cmacmoB540
CmaCh20G006480Cucurbita moschata (Rifu)cmacmoB547
CmaCh20G006480Wild cucumber (PI 183967)cmacpiB576
CmaCh20G006480Cucumber (Chinese Long) v2cmacuB569
CmaCh20G006480Watermelon (Charleston Gray)cmawcgB494
CmaCh20G006480Watermelon (97103) v1cmawmB525
CmaCh20G006480Watermelon (97103) v1cmawmB528
CmaCh20G006480Cucurbita pepo (Zucchini)cmacpeB559
CmaCh20G006480Cucurbita pepo (Zucchini)cmacpeB574
CmaCh20G006480Cucurbita pepo (Zucchini)cmacpeB578
CmaCh20G006480Bottle gourd (USVL1VR-Ls)cmalsiB513
CmaCh20G006480Cucumber (Gy14) v2cgybcmaB953