CSPI06G09830 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G09830
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Calcium-binding EF-hand protein
Location	Chr6 : 8484079 .. 8484645 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAATGTCGAAAAAGGGGGGTGCTAATTTCCAGGATTTGCTTCCGGTAATGGCAGAGAAATTGGGGGGAGAGGGGCTGATAAAGGAGCTGTGTAATGGTTTTGAAGTACTGATGGACAAAGAGAAAGGGGTGATCACATTGGAGAGCCTTAGGAGAAACTCTTGCCTTTTGGGTGTGCGTGACATGGCTGAGGAAGAGCTTCTTAGCATGATGAGGGAAGGCGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGTGTTTTGATGTTCAGATTAAGCCCTGACTTGATGCAACACTCTTTGTATTGGCTTCAACTTGCTCTCGAAAACGAGTTTTAATTCAACCTTTTTTCATTTTCTTCTTCTTCTTCTTTTCTTTTTTTTTTCCCCTTTGGAAAGAGGATCGAAGTTCCAAAACTAGCGTCGTCCCCTGTCTGCCTTTCTACCTGAAGATGCACGCGCATGCCTGTGGGGGAGTTCGATGAAATGATGTGGTTTCATTTTGAATTGAGGAATATAGGAAGCCGCTTCTGCCTTTAATTTCGTTTTATTCCAAGCG

mRNA sequence

ATGTCGAAAAAGGGGGGTGCTAATTTCCAGGATTTGCTTCCGGTAATGGCAGAGAAATTGGGGGGAGAGGGGCTGATAAAGGAGCTGTGTAATGGTTTTGAAGTACTGATGGACAAAGAGAAAGGGGTGATCACATTGGAGAGCCTTAGGAGAAACTCTTGCCTTTTGGGTGTGCGTGACATGGCTGAGGAAGAGCTTCTTAGCATGATGAGGGAAGGCGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGTGTTTTGATGTTCAGATTAAGCCCTGACTTGATGCAACACTCTTTGTATTGGCTTCAACTTGCTCTCGAAAACGAGTTTTAA

Coding sequence (CDS)

ATGTCGAAAAAGGGGGGTGCTAATTTCCAGGATTTGCTTCCGGTAATGGCAGAGAAATTGGGGGGAGAGGGGCTGATAAAGGAGCTGTGTAATGGTTTTGAAGTACTGATGGACAAAGAGAAAGGGGTGATCACATTGGAGAGCCTTAGGAGAAACTCTTGCCTTTTGGGTGTGCGTGACATGGCTGAGGAAGAGCTTCTTAGCATGATGAGGGAAGGCGACTTGGATGGCGATGGCGCTTTGAATCAAATGGAGTTTTGTGTTTTGATGTTCAGATTAAGCCCTGACTTGATGCAACACTCTTTGTATTGGCTTCAACTTGCTCTCGAAAACGAGTTTTAA

Homology

[Close]

BLAST of CSPI06G09830 vs. Swiss-Prot
Match: PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.5e-31
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 9   FQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRN-SCLLGVRDMAEEELL 68
           FQD  P MA KLGGEGLI+E+C GFE+LMDK+KGVIT ESLRRN S +LG+ D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 69  SMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 114
            M+ EGD D DGALNQMEFCVLMFRLSP+LM+ S   +   +E EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]

BLAST of CSPI06G09830 vs. Swiss-Prot
Match: KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2)

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-29
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 9   FQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEELLS 68
           ++D+LPVMAEK+  E  + ELC GF +L D E+ +IT ESLRRNS +LG+  M++E+   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 69  MMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           M+REGDLDGDGALNQ EFCVLM RLSP++M+ +  WL+ AL  E
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]

BLAST of CSPI06G09830 vs. Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-09
Identity = 33/90 (36.67%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEE 64
           G  NF D L VM +K+  +   +E+   F++  D E G I+ ++L+R +  LG  ++++E
Sbjct: 82  GKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLSDE 141

Query: 65  ELLSMMREGDLDGDGALNQMEFCVLMFRLS 95
           EL  M+ E D DGDG +N+ EF  +M + S
Sbjct: 142 ELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of CSPI06G09830 vs. Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.3e-09
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEE 64
           G  NF D L VM +K+  +   +E+   F++  D E G I+ ++L+R +  LG  ++ +E
Sbjct: 82  GKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLTDE 141

Query: 65  ELLSMMREGDLDGDGALNQMEFCVLMFRLS 95
           EL  M+ E D DGDG +N+ EF  +M + S
Sbjct: 142 ELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170

[Close]

BLAST of CSPI06G09830 vs. Swiss-Prot
Match: CETN2_HUMAN (Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.4e-08
Identity = 32/90 (35.56%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEE 64
           G  NF D L VM +K+  +   +E+   F++  D E G I+ ++L+R +  LG  ++ +E
Sbjct: 82  GKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLTDE 141

Query: 65  ELLSMMREGDLDGDGALNQMEFCVLMFRLS 95
           EL  M+ E D DGDG +++ EF  +M + S
Sbjct: 142 ELQEMIDEADRDGDGEVSEQEFLRIMKKTS 170

[Close]

BLAST of CSPI06G09830 vs. TrEMBL
Match: A0A0A0KCV2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120930 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 8.2e-56
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 1


Query: 1   MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRD 60
           MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNS LLGVRD
Sbjct: 1   MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRD 60

Query: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 114
           MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF
Sbjct: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]

BLAST of CSPI06G09830 vs. TrEMBL
Match: I1LRV1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G103600 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-41
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 6   GANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEE 65
           G  F+DLLPVMA KLGGEGL+KELCNGFE+L+DKEKGVITLESLRRN+ LLG++D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 66  LLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           L+SMMREGDLDGDGAL QMEFCVLMFRLSPDLM+ S +WL+ AL++E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]

BLAST of CSPI06G09830 vs. TrEMBL
Match: A0A0B2QRZ1_GLYSO (Calcium-binding protein PBP1 OS=Glycine soja GN=glysoja_020799 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-41
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 6   GANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEE 65
           G  F+DLLPVMA KLGGEGL+KELCNGFE+L+DKEKGVITLESLRRN+ LLG++D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 66  LLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           L+SMMREGDLDGDGAL QMEFCVLMFRLSPDLM+ S +WL+ AL++E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]

BLAST of CSPI06G09830 vs. TrEMBL
Match: C6T3M0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.4e-41
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 6   GANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEE 65
           G  F+DLLPVMA KLGGEGL+KELCNGFE+L+DKEKGVITLESLRRN+ LLG++D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 66  LLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           L+SMMREGDLDGDGAL QMEFCVLMFRLSPDLM+ S +WL+ AL++E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]

BLAST of CSPI06G09830 vs. TrEMBL
Match: W9R6E7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008728 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.3e-40
Identity = 81/104 (77.88%), Postives = 95/104 (91.35%), Query Frame = 1


Query: 9   FQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEELLS 68
           F+DLLPVMAEK+GGEGLI ELCNGFE+LMDKEKG+ITL+SLRRNS +LG++D+ E+EL S
Sbjct: 10  FEDLLPVMAEKVGGEGLINELCNGFELLMDKEKGLITLDSLRRNSAVLGLQDLREDELES 69

Query: 69  MMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           M++EGDLDGDGALNQMEFCVLMFRLSPDLM  S +WLQ AL+ E
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPDLMDESWFWLQHALQQE 113

[Close]

BLAST of CSPI06G09830 vs. TAIR10
Match: AT4G27280.1 (AT4G27280.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 140.6 bits (353), Expect = 6.1e-34
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1


Query: 8   NFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRN-SCLLGVRDMAEEEL 67
           NF D LP MA  LGGEGLI ELCNGFE+LMD+EKGVIT ESLRRN + +LG+ D+ +E++
Sbjct: 18  NFHDFLPTMAGNLGGEGLIGELCNGFELLMDREKGVITFESLRRNAAAVLGLGDLTDEDV 77

Query: 68  LSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 114
             M++EGD D DGALNQMEFCVLMFRLSPDLM+ S   +   +E EF
Sbjct: 78  RCMIKEGDFDCDGALNQMEFCVLMFRLSPDLMEASRCLVTEVIEEEF 124

[Close]

BLAST of CSPI06G09830 vs. TAIR10
Match: AT5G54490.1 (AT5G54490.1 pinoid-binding protein 1)

HSP 1 Score: 135.2 bits (339), Expect = 2.5e-32
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 1


Query: 9   FQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRN-SCLLGVRDMAEEELL 68
           FQD  P MA KLGGEGLI+E+C GFE+LMDK+KGVIT ESLRRN S +LG+ D+ ++++ 
Sbjct: 19  FQDFFPTMAGKLGGEGLIEEICKGFELLMDKDKGVITFESLRRNASTVLGLGDLTDDDVR 78

Query: 69  SMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 114
            M+ EGD D DGALNQMEFCVLMFRLSP+LM+ S   +   +E EF
Sbjct: 79  YMINEGDFDRDGALNQMEFCVLMFRLSPELMEASRCVVTEVIEEEF 124

[Close]

BLAST of CSPI06G09830 vs. TAIR10
Match: AT2G46600.1 (AT2G46600.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 127.5 bits (319), Expect = 5.3e-30
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 1


Query: 9   FQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEELLS 68
           ++D+LPVMAEK+  E  + ELC GF +L D E+ +IT ESLRRNS +LG+  M++E+   
Sbjct: 22  YEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQG 81

Query: 69  MMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           M+REGDLDGDGALNQ EFCVLM RLSP++M+ +  WL+ AL  E
Sbjct: 82  MVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQE 125

[Close]

BLAST of CSPI06G09830 vs. TAIR10
Match: AT5G37780.3 (AT5G37780.3 calmodulin 1)

HSP 1 Score: 50.8 bits (120), Expect = 6.3e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEE 64
           G  +F + L +MA+K+      +EL   F V    + G I+   LR     LG + + +E
Sbjct: 88  GTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-LTDE 147

Query: 65  ELLSMMREGDLDGDGALNQMEFCVLM 91
           E+  M+RE D+DGDG +N  EF  +M
Sbjct: 148 EVEEMIREADVDGDGQINYEEFVKIM 172

[Close]

BLAST of CSPI06G09830 vs. TAIR10
Match: AT1G66410.2 (AT1G66410.2 calmodulin 4)

HSP 1 Score: 50.8 bits (120), Expect = 6.3e-07
Identity = 30/86 (34.88%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 5   GGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEE 64
           G  +F + L +MA+K+      +EL   F V    + G I+   LR     LG + + +E
Sbjct: 72  GTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEK-LTDE 131

Query: 65  ELLSMMREGDLDGDGALNQMEFCVLM 91
           E+  M+RE D+DGDG +N  EF  +M
Sbjct: 132 EVEEMIREADVDGDGQINYEEFVKIM 156

[Close]

BLAST of CSPI06G09830 vs. NCBI nr
Match: gi|449444586|ref|XP_004140055.1| (PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 1


Query: 1   MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRD 60
           MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNS LLGVRD
Sbjct: 1   MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSWLLGVRD 60

Query: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 114
           MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF
Sbjct: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 113

[Close]

BLAST of CSPI06G09830 vs. NCBI nr
Match: gi|351727699|ref|NP_001236402.1| (uncharacterized protein LOC100527206 [Glycine max])

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-41
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 6   GANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEE 65
           G  F+DLLPVMA KLGGEGL+KELCNGFE+L+DKEKGVITLESLRRN+ LLG++D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 66  LLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           L+SMMREGDLDGDGAL QMEFCVLMFRLSPDLM+ S +WL+ AL++E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]

BLAST of CSPI06G09830 vs. NCBI nr
Match: gi|734380494|gb|KHN22869.1| (Calcium-binding protein PBP1 [Glycine soja])

HSP 1 Score: 175.6 bits (444), Expect = 4.8e-41
Identity = 83/107 (77.57%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 6   GANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEE 65
           G  F+DLLPVMA KLGGEGL+KELCNGFE+L+DKEKGVITLESLRRN+ LLG++D+ E+E
Sbjct: 3   GIGFEDLLPVMANKLGGEGLMKELCNGFELLVDKEKGVITLESLRRNAALLGLQDLKEDE 62

Query: 66  LLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           L+SMMREGDLDGDGAL QMEFCVLMFRLSPDLM+ S +WL+ AL++E
Sbjct: 63  LVSMMREGDLDGDGALTQMEFCVLMFRLSPDLMEESWFWLEEALQHE 109

[Close]

BLAST of CSPI06G09830 vs. NCBI nr
Match: gi|703094244|ref|XP_010095191.1| (hypothetical protein L484_008728 [Morus notabilis])

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 81/104 (77.88%), Postives = 95/104 (91.35%), Query Frame = 1


Query: 9   FQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRDMAEEELLS 68
           F+DLLPVMAEK+GGEGLI ELCNGFE+LMDKEKG+ITL+SLRRNS +LG++D+ E+EL S
Sbjct: 10  FEDLLPVMAEKVGGEGLINELCNGFELLMDKEKGLITLDSLRRNSAVLGLQDLREDELES 69

Query: 69  MMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENE 113
           M++EGDLDGDGALNQMEFCVLMFRLSPDLM  S +WLQ AL+ E
Sbjct: 70  MVKEGDLDGDGALNQMEFCVLMFRLSPDLMDESWFWLQHALQQE 113

[Close]

BLAST of CSPI06G09830 vs. NCBI nr
Match: gi|694324408|ref|XP_009353225.1| (PREDICTED: calcium-binding protein PBP1-like [Pyrus x bretschneideri])

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-39
Identity = 79/113 (69.91%), Postives = 101/113 (89.38%), Query Frame = 1


Query: 1   MSKKGGANFQDLLPVMAEKLGGEGLIKELCNGFEVLMDKEKGVITLESLRRNSCLLGVRD 60
           + K+   +F+DLLPVMA+KLGG+GLI+ELCNGF++LMDK+KGVITLESLRRNS LLG+++
Sbjct: 4   VGKRAADDFEDLLPVMADKLGGKGLIRELCNGFQLLMDKDKGVITLESLRRNSALLGLQN 63

Query: 61  MAEEELLSMMREGDLDGDGALNQMEFCVLMFRLSPDLMQHSLYWLQLALENEF 114
             E+EL+SM+REGD+DGDGALNQMEFCVLMFRLSP+LM+ S  WL+ A++ EF
Sbjct: 64  FREDELVSMVREGDMDGDGALNQMEFCVLMFRLSPELMEESWTWLEQAMQEEF 116

The following BLAST results are available for this feature:

BLAST of CSPI06G09830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PBP1_ARATH	4.5e-31	63.21	Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1	[more]
KIC_ARATH	9.4e-29	57.69	Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2	[more]
CETN2_BOVIN	6.4e-09	36.67	Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1	[more]
CETN2_MOUSE	8.3e-09	36.67	Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1	[more]
CETN2_HUMAN	5.4e-08	35.56	Centrin-2 OS=Homo sapiens GN=CETN2 PE=1 SV=1	[more]

BLAST of CSPI06G09830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCV2_CUCSA	8.2e-56	99.12	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G120930 PE=4 SV=1	[more]
I1LRV1_SOYBN	3.4e-41	77.57	Uncharacterized protein OS=Glycine max GN=GLYMA_12G103600 PE=4 SV=1	[more]
A0A0B2QRZ1_GLYSO	3.4e-41	77.57	Calcium-binding protein PBP1 OS=Glycine soja GN=glysoja_020799 PE=4 SV=1	[more]
C6T3M0_SOYBN	3.4e-41	77.57	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
W9R6E7_9ROSA	8.3e-40	77.88	Uncharacterized protein OS=Morus notabilis GN=L484_008728 PE=4 SV=1	[more]

BLAST of CSPI06G09830 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27280.1	6.1e-34	65.42	Calcium-binding EF-hand family protein	[more]
AT5G54490.1	2.5e-32	63.21	pinoid-binding protein 1	[more]
AT2G46600.1	5.3e-30	57.69	Calcium-binding EF-hand family protein	[more]
AT5G37780.3	6.3e-07	34.88	calmodulin 1	[more]
AT1G66410.2	6.3e-07	34.88	calmodulin 4	[more]

BLAST of CSPI06G09830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444586\|ref\|XP_004140055.1\|	1.2e-55	99.12	PREDICTED: calcium-binding protein PBP1-like [Cucumis sativus]	[more]
gi\|351727699\|ref\|NP_001236402.1\|	4.8e-41	77.57	uncharacterized protein LOC100527206 [Glycine max]	[more]
gi\|734380494\|gb\|KHN22869.1\|	4.8e-41	77.57	Calcium-binding protein PBP1 [Glycine soja]	[more]
gi\|703094244\|ref\|XP_010095191.1\|	1.2e-39	77.88	hypothetical protein L484_008728 [Morus notabilis]	[more]
gi\|694324408\|ref\|XP_009353225.1\|	1.2e-39	69.91	PREDICTED: calcium-binding protein PBP1-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0051301	cell division
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0048825	cotyledon development
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0008199	ferric iron binding
molecular_function	GO:0004322	ferroxidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G09830.1	CSPI06G09830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13833	EF-hand_8	coord: 40..92 score: 2.2
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 65..93 score: 0.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 61..96 score: 10
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 9..92 score: 2.0
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 3..90 score: 1.2
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 74..86 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 8..113 score: 4.7
None	No IPR available	PANTHER	PTHR10891:SF585	SUBFAMILY NOT NAMED	coord: 8..113 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G09830	Csa6G120930	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G09830	Lsi10G008480	Bottle gourd (USVL1VR-Ls)	cpilsiB411
CSPI06G09830	CsaV3_6G012270	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G09830	Cucsa.119690	Cucumber (Gy14) v1	cgycpiB156
CSPI06G09830	CmaCh02G001360	Cucurbita maxima (Rimu)	cmacpiB641
CSPI06G09830	CmoCh20G005980	Cucurbita moschata (Rifu)	cmocpiB561
CSPI06G09830	CmoCh02G001380	Cucurbita moschata (Rifu)	cmocpiB633
CSPI06G09830	Cp4.1LG16g04730	Cucurbita pepo (Zucchini)	cpecpiB289
CSPI06G09830	CsGy6G009950	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G09830	Carg03155	Silver-seed gourd	carcpiB0372
CSPI06G09830	Carg13555	Silver-seed gourd	carcpiB0028

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G09830	Watermelon (97103) v2	cpiwmbB455
CSPI06G09830	Wax gourd	cpiwgoB605
CSPI06G09830	Wax gourd	cpiwgoB624
CSPI06G09830	Melon (DHL92) v3.5.1	cpimeB419
CSPI06G09830	Melon (DHL92) v3.5.1	cpimeB442
CSPI06G09830	Melon (DHL92) v3.6.1	cpimedB414
CSPI06G09830	Melon (DHL92) v3.6.1	cpimedB440