CmoCh19G007670 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G007670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr19 : 7754695 .. 7755078 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGACGGGAAGCAGACCGCGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGAGGCCGGAAAAATGCGAAAGCCAGTAATCTACTGGAAGCCATTGCCAAAGTAAGCAGAGAAGGAACTGGTTTCGTTTCTCAGAACGAAGAAGACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCTTGGCCGGCGGCGGCGGCGGAGGAGGAGTTGCTCCGGCGTCGGTCTCCGTCGAACACAGGCTGGCTATTATGAGACGAAAGCAATTTCTCCGAGCGAAACTAGCCGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAATCGAAGATGAAACGACGTCGTAG

mRNA sequence

ATGATCGACGGGAAGCAGACCGCGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGAGGCCGGAAAAATGCGAAAGCCAGTAATCTACTGGAAGCCATTGCCAAAGTAAGCAGAGAAGGAACTGGTTTCGTTTCTCAGAACGAAGAAGACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCTTGGCCGGCGGCGGCGGCGGAGGAGGAGTTGCTCCGGCGTCGGTCTCCGTCGAACACAGGCTGGCTATTATGAGACGAAAGCAATTTCTCCGAGCGAAACTAGCCGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAATCGAAGATGAAACGACGTCGTAG

Coding sequence (CDS)

ATGATCGACGGGAAGCAGACCGCGTCGCCGAACGGAGCTTTCCGGCGACTTTTCAGAGCTCGAGGCCGGAAAAATGCGAAAGCCAGTAATCTACTGGAAGCCATTGCCAAAGTAAGCAGAGAAGGAACTGGTTTCGTTTCTCAGAACGAAGAAGACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCTTGGCCGGCGGCGGCGGCGGAGGAGGAGTTGCTCCGGCGTCGGTCTCCGTCGAACACAGGCTGGCTATTATGAGACGAAAGCAATTTCTCCGAGCGAAACTAGCCGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAATCGAAGATGAAACGACGTCGTAG

Homology

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BLAST of CmoCh19G007670 vs. TrEMBL
Match: A0A0A0K2L8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.5e-45
Identity = 100/121 (82.64%), Postives = 109/121 (90.08%), Query Frame = 1


Query: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60
           MI+GKQ ASPNG FRRLFRAR RK+AKA+ LLEAIAK SREG GFVS +EE+GVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEALAGGGGGGG-VAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIP 120
           VKKTDL QVLEA+ GG GGGG VAPASVS+EHRL ++RRKQFLRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

[Close]

BLAST of CmoCh19G007670 vs. TrEMBL
Match: A0A061DZR6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006557 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 1


Query: 2   IDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVV 61
           ++GK  ASP   F+++ R+R +K A  SNLLEAIA+ +  G G VS   EDGVVR+K+VV
Sbjct: 1   MEGK--ASPKREFKQV-RSRNQK-ALRSNLLEAIAEAN--GGGVVSHINEDGVVRMKIVV 60

Query: 62  KKTDLAQVLEALAGGGGGGGVAPASVSVEHRLAIMRRKQFLRA---KLAAATWSPALQSI 121
           +K DL Q+L  + GGG        S SVE RL ++RRK  +R+   K +   WSP LQSI
Sbjct: 61  RKQDLKQMLGMINGGGRISSNQSPSPSVEERLNLLRRKHLMRSNAVKKSPRPWSPELQSI 116

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BLAST of CmoCh19G007670 vs. TrEMBL
Match: F6I0Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02880 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.1e-12
Identity = 53/109 (48.62%), Postives = 71/109 (65.14%), Query Frame = 1


Query: 16  RLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLAQVLEALAG 75
           RL+RA G+K  K S LLEAIA+V+  G+  VS ++EDGV+R+K+VVKK DL Q+LE +  
Sbjct: 17  RLWRAMGQKGVKGS-LLEAIAQVNG-GSHVVSHSDEDGVLRMKIVVKKQDLKQMLEVMR- 76

Query: 76  GGGGGGVAPASVSVEHRLAIMRRKQFLRA----KLAAATWSPALQSIPE 121
            GG       S S+E RL ++RRK  LR     +   ++W PAL SIPE
Sbjct: 77  -GGKSSAHQPSPSLEQRLNLLRRKHVLRGNQSNRSRRSSWRPALHSIPE 121

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BLAST of CmoCh19G007670 vs. TrEMBL
Match: B9H1L6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18500g PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 8   ASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLA 67
           ASP   FR L R R  ++ K SNL E+I +V+  G   VS   E+G VR+K+VV+K DL 
Sbjct: 12  ASPKRDFRALLRGRNHRSLK-SNLPESIGQVN--GGCVVSHTNENGFVRMKLVVRKQDLK 71

Query: 68  QVLEALAGGGGGGGVAP----ASVSVEHRLAIMRRKQFLRAKLAAA----TWSPALQSIP 121
           Q+LE + GG      A     +S+S+E RL ++RRK   R+  A      +W+PALQSIP
Sbjct: 72  QMLEVMRGGKSNANQASYSPVSSLSLEQRLNLLRRKHLSRSNSAKGSCRRSWTPALQSIP 129

[Close]

BLAST of CmoCh19G007670 vs. TrEMBL
Match: A0A0D2RKW2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G255400 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-11
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 2   IDGKQTASPNGAFRRLFRARGRKNAKASN---LLEAIAKVS-REGTGFVSQNEEDGVVRI 61
           ++GK  ASP   F++      +   ++SN   LLEAIA  S   G G VS   E+G +R+
Sbjct: 1   MEGK--ASPKREFKQSKSRNQKSLTRSSNNSYLLEAIANASNNRGGGVVSHIHENGTLRV 60

Query: 62  KMVVKKTDLAQVLEALAGGGGGGG------VAPASVSVEHRLAIMRRKQFLRA----KLA 121
           K+VVKK DL Q+L  + GG G          +P S+SVE RL ++R+KQ LR+    K +
Sbjct: 61  KIVVKKQDLRQMLGIINGGTGKNNNNYYYQSSPPSISVEERLNLLRKKQLLRSNAIKKKS 120

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BLAST of CmoCh19G007670 vs. NCBI nr
Match: gi|700188041|gb|KGN43274.1| (hypothetical protein Csa_7G014600 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.6e-45
Identity = 100/121 (82.64%), Postives = 109/121 (90.08%), Query Frame = 1


Query: 1   MIDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 60
           MI+GKQ ASPNG FRRLFRAR RK+AKA+ LLEAIAK SREG GFVS +EE+GVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 61  VKKTDLAQVLEALAGGGGGGG-VAPASVSVEHRLAIMRRKQFLRAKLAAATWSPALQSIP 120
           VKKTDL QVLEA+ GG GGGG VAPASVS+EHRL ++RRKQFLRAKLAAATWSPALQSIP
Sbjct: 61  VKKTDLVQVLEAMGGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSIP 120

[Close]

BLAST of CmoCh19G007670 vs. NCBI nr
Match: gi|590684020|ref|XP_007041740.1| (Uncharacterized protein TCM_006557 [Theobroma cacao])

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-13
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 1


Query: 2   IDGKQTASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVV 61
           ++GK  ASP   F+++ R+R +K A  SNLLEAIA+ +  G G VS   EDGVVR+K+VV
Sbjct: 1   MEGK--ASPKREFKQV-RSRNQK-ALRSNLLEAIAEAN--GGGVVSHINEDGVVRMKIVV 60

Query: 62  KKTDLAQVLEALAGGGGGGGVAPASVSVEHRLAIMRRKQFLRA---KLAAATWSPALQSI 121
           +K DL Q+L  + GGG        S SVE RL ++RRK  +R+   K +   WSP LQSI
Sbjct: 61  RKQDLKQMLGMINGGGRISSNQSPSPSVEERLNLLRRKHLMRSNAVKKSPRPWSPELQSI 116

[Close]

BLAST of CmoCh19G007670 vs. NCBI nr
Match: gi|224080664|ref|XP_002306201.1| (hypothetical protein POPTR_0004s18500g [Populus trichocarpa])

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 1


Query: 8   ASPNGAFRRLFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLA 67
           ASP   FR L R R  ++ K SNL E+I +V+  G   VS   E+G VR+K+VV+K DL 
Sbjct: 12  ASPKRDFRALLRGRNHRSLK-SNLPESIGQVN--GGCVVSHTNENGFVRMKLVVRKQDLK 71

Query: 68  QVLEALAGGGGGGGVAP----ASVSVEHRLAIMRRKQFLRAKLAAA----TWSPALQSIP 121
           Q+LE + GG      A     +S+S+E RL ++RRK   R+  A      +W+PALQSIP
Sbjct: 72  QMLEVMRGGKSNANQASYSPVSSLSLEQRLNLLRRKHLSRSNSAKGSCRRSWTPALQSIP 129

[Close]

BLAST of CmoCh19G007670 vs. NCBI nr
Match: gi|763765200|gb|KJB32454.1| (hypothetical protein B456_005G255400 [Gossypium raimondii])

HSP 1 Score: 76.6 bits (187), Expect = 3.4e-11
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 1


Query: 2   IDGKQTASPNGAFRRLFRARGRKNAKASN---LLEAIAKVS-REGTGFVSQNEEDGVVRI 61
           ++GK  ASP   F++      +   ++SN   LLEAIA  S   G G VS   E+G +R+
Sbjct: 1   MEGK--ASPKREFKQSKSRNQKSLTRSSNNSYLLEAIANASNNRGGGVVSHIHENGTLRV 60

Query: 62  KMVVKKTDLAQVLEALAGGGGGGG------VAPASVSVEHRLAIMRRKQFLRA----KLA 121
           K+VVKK DL Q+L  + GG G          +P S+SVE RL ++R+KQ LR+    K +
Sbjct: 61  KIVVKKQDLRQMLGIINGGTGKNNNNYYYQSSPPSISVEERLNLLRKKQLLRSNAIKKKS 120

[Close]

BLAST of CmoCh19G007670 vs. NCBI nr
Match: gi|604333631|gb|EYU37982.1| (hypothetical protein MIMGU_mgv1a020395mg [Erythranthe guttata])

HSP 1 Score: 75.5 bits (184), Expect = 7.6e-11
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 1


Query: 2   IDGKQTASPNGAFRRLFR-ARGRKNAKAS--NLLEAIAKVSREGTGFVSQNEEDGVVRIK 61
           ++ K     + + RR FR +R  +N KAS  N+LEAIA++S    G      EDG  R+K
Sbjct: 1   MESKIAEEKSSSQRREFRFSRSGRNQKASASNILEAIAEIS----GGEMAAAEDG--RMK 60

Query: 62  MVVKKTDLAQVLEALAGGGGGG---GVAPASVSVEHRLAIMRRKQFLRAK-----LAAAT 121
           ++VKK DL QVLEA+  G G G     +P  VS+E RL +MRR+Q LRA       +  +
Sbjct: 61  IMVKKEDLKQVLEAIRDGRGLGRRNSASPPPVSLEQRLNLMRRRQILRAANQVKGRSRGS 120

The following BLAST results are available for this feature:

BLAST of CmoCh19G007670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G007670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2L8_CUCSA	2.5e-45	82.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G014600 PE=4 SV=1	[more]
A0A061DZR6_THECC	2.5e-13	48.36	Uncharacterized protein OS=Theobroma cacao GN=TCM_006557 PE=4 SV=1	[more]
F6I0Y0_VITVI	2.1e-12	48.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02880 PE=4 SV=...	[more]
B9H1L6_POPTR	1.1e-11	43.80	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18500g PE=4 SV=1	[more]
A0A0D2RKW2_GOSRA	2.4e-11	42.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G255400 PE=4 SV=1	[more]

BLAST of CmoCh19G007670 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh19G007670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188041\|gb\|KGN43274.1\|	3.6e-45	82.64	hypothetical protein Csa_7G014600 [Cucumis sativus]	[more]
gi\|590684020\|ref\|XP_007041740.1\|	3.6e-13	48.36	Uncharacterized protein TCM_006557 [Theobroma cacao]	[more]
gi\|224080664\|ref\|XP_002306201.1\|	1.5e-11	43.80	hypothetical protein POPTR_0004s18500g [Populus trichocarpa]	[more]
gi\|763765200\|gb\|KJB32454.1\|	3.4e-11	42.11	hypothetical protein B456_005G255400 [Gossypium raimondii]	[more]
gi\|604333631\|gb\|EYU37982.1\|	7.6e-11	44.62	hypothetical protein MIMGU_mgv1a020395mg [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G007670.1	CmoCh19G007670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 15..120 score: 4.7
None	No IPR available	PANTHER	PTHR33148:SF4	SUBFAMILY NOT NAMED	coord: 15..120 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh19G007670	CmaCh19G007540	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G007670	Cla015806	Watermelon (97103) v1	cmowmB496
CmoCh19G007670	Csa7G014600	Cucumber (Chinese Long) v2	cmocuB518
CmoCh19G007670	MELO3C013332	Melon (DHL92) v3.5.1	cmomeB453
CmoCh19G007670	ClCG02G003900	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G007670	CSPI07G01180	Wild cucumber (PI 183967)	cmocpiB524
CmoCh19G007670	Cp4.1LG15g06090	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G007670	MELO3C013332.2	Melon (DHL92) v3.6.1	cmomedB522
CmoCh19G007670	CsaV3_7G001230	Cucumber (Chinese Long) v3	cmocucB0622
CmoCh19G007670	Cla97C02G030710	Watermelon (97103) v2	cmowmbB512
CmoCh19G007670	Bhi05G001450	Wax gourd	cmowgoB0653
CmoCh19G007670	CsGy7G001000	Cucumber (Gy14) v2	cgybcmoB927

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G007670	Cucurbita moschata (Rifu)	cmocmoB108
CmoCh19G007670	Cucurbita moschata (Rifu)	cmocmoB383
CmoCh19G007670	Cucurbita moschata (Rifu)	cmocmoB386
CmoCh19G007670	Cucumber (Gy14) v1	cgycmoB1025
CmoCh19G007670	Cucurbita maxima (Rimu)	cmacmoB145
CmoCh19G007670	Cucurbita maxima (Rimu)	cmacmoB548
CmoCh19G007670	Cucurbita maxima (Rimu)	cmacmoB596
CmoCh19G007670	Cucurbita pepo (Zucchini)	cmocpeB484
CmoCh19G007670	Cucurbita pepo (Zucchini)	cmocpeB492
CmoCh19G007670	Bottle gourd (USVL1VR-Ls)	cmolsiB457
CmoCh19G007670	Silver-seed gourd	carcmoB0472
CmoCh19G007670	Silver-seed gourd	carcmoB1090
CmoCh19G007670	Silver-seed gourd	carcmoB1427