CmaCh19G007540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh19G007540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr19 : 7494049 .. 7494465 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATTCGATCCGATTGCAACCGAAACCCTAACAATATGATCGACGGGAAGCAGACCGCGTCGCCGAACGGAGCTTTCCGGCGAATTTTCAGAGCTCGAGGCCGGAAAAATGCGAAAGCCAGTAATCTACTGGAAGCCATTGCCAAAGTAAGCAGAGAAGGAACTGGTTTTGTTTCTCAGAACGAAGAAGACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCATGGCCGGCGGCGGCGACGGAGGAGGAGTTGCTCCGTCGTCGGTCTCCGTCGAACAGAGGCTGGCTCTTGTGAGACGAAAGCAATTTCTCCGAGCGAAACTAGCCGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCATTCTGA

mRNA sequence

ATGCCGATTCGATCCGATTGCAACCGAAACCCTAACAATATGATCGACGGGAAGCAGACCGCGTCGCCGAACGGAGCTTTCCGGCGAATTTTCAGAGCTCGAGGCCGGAAAAATGCGAAAGCCAGTAATCTACTGGAAGCCATTGCCAAAGTAAGCAGAGAAGGAACTGGTTTTGTTTCTCAGAACGAAGAAGACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCATGGCCGGCGGCGGCGACGGAGGAGGAGTTGCTCCGTCGTCGGTCTCCGTCGAACAGAGGCTGGCTCTTGTGAGACGAAAGCAATTTCTCCGAGCGAAACTAGCCGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCATTCTGA

Coding sequence (CDS)

ATGCCGATTCGATCCGATTGCAACCGAAACCCTAACAATATGATCGACGGGAAGCAGACCGCGTCGCCGAACGGAGCTTTCCGGCGAATTTTCAGAGCTCGAGGCCGGAAAAATGCGAAAGCCAGTAATCTACTGGAAGCCATTGCCAAAGTAAGCAGAGAAGGAACTGGTTTTGTTTCTCAGAACGAAGAAGACGGAGTCGTACGGATAAAGATGGTGGTGAAGAAGACAGATTTAGCTCAAGTTCTCGAAGCCATGGCCGGCGGCGGCGACGGAGGAGGAGTTGCTCCGTCGTCGGTCTCCGTCGAACAGAGGCTGGCTCTTGTGAGACGAAAGCAATTTCTCCGAGCGAAACTAGCCGCCGCGACTTGGAGTCCGGCGCTGCAGAGCATTCCTGAAGAGATCGATTCATTCTGA

Protein sequence

MPIRSDCNRNPNNMIDGKQTASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLAQVLEAMAGGGDGGGVAPSSVSVEQRLALVRRKQFLRAKLAAATWSPALQSIPEEIDSF

Homology

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BLAST of CmaCh19G007540 vs. TrEMBL
Match: A0A0A0K2L8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G014600 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.5e-46
Identity = 104/127 (81.89%), Postives = 114/127 (89.76%), Query Frame = 1


Query: 14  MIDGKQTASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 73
           MI+GKQ ASPNG FRR+FRAR RK+AKA+ LLEAIAK SREG GFVS +EE+GVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 74  VKKTDLAQVLEAMAGGGDGGG--VAPSSVSVEQRLALVRRKQFLRAKLAAATWSPALQSI 133
           VKKTDL QVLEAM GGGDGGG  VAP+SVS+E RL ++RRKQFLRAKLAAATWSPALQSI
Sbjct: 61  VKKTDLVQVLEAM-GGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSI 120

Query: 134 PEEIDSF 139
           PEEIDSF
Sbjct: 121 PEEIDSF 126

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BLAST of CmaCh19G007540 vs. TrEMBL
Match: A0A061DZR6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006557 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-14
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 15  IDGKQTASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVV 74
           ++GK  ASP   F+++ R+R +K A  SNLLEAIA+ +  G G VS   EDGVVR+K+VV
Sbjct: 1   MEGK--ASPKREFKQV-RSRNQK-ALRSNLLEAIAEAN--GGGVVSHINEDGVVRMKIVV 60

Query: 75  KKTDLAQVLEAMAGGGDGGGVAPSSVSVEQRLALVRRKQFLRA---KLAAATWSPALQSI 134
           +K DL Q+L  + GGG        S SVE+RL L+RRK  +R+   K +   WSP LQSI
Sbjct: 61  RKQDLKQMLGMINGGGRISSNQSPSPSVEERLNLLRRKHLMRSNAVKKSPRPWSPELQSI 117

[Close]

BLAST of CmaCh19G007540 vs. TrEMBL
Match: F6I0Y0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02880 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-14
Identity = 56/111 (50.45%), Postives = 74/111 (66.67%), Query Frame = 1


Query: 29  RIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLAQVLEAMAG 88
           R++RA G+K  K S LLEAIA+V+  G+  VS ++EDGV+R+K+VVKK DL Q+LE M G
Sbjct: 17  RLWRAMGQKGVKGS-LLEAIAQVNG-GSHVVSHSDEDGVLRMKIVVKKQDLKQMLEVMRG 76

Query: 89  GGDGGGVAPSSVSVEQRLALVRRKQFLRA----KLAAATWSPALQSIPEEI 136
           G         S S+EQRL L+RRK  LR     +   ++W PAL SIPEE+
Sbjct: 77  G--KSSAHQPSPSLEQRLNLLRRKHVLRGNQSNRSRRSSWRPALHSIPEEL 123

[Close]

BLAST of CmaCh19G007540 vs. TrEMBL
Match: B9H1L6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18500g PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.7e-13
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 1


Query: 21  ASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLA 80
           ASP   FR + R R  ++ K SNL E+I +V+  G   VS   E+G VR+K+VV+K DL 
Sbjct: 12  ASPKRDFRALLRGRNHRSLK-SNLPESIGQVN--GGCVVSHTNENGFVRMKLVVRKQDLK 71

Query: 81  QVLEAMAGGGDGGGVAP----SSVSVEQRLALVRRKQFLRAKLAAA----TWSPALQSIP 134
           Q+LE M GG      A     SS+S+EQRL L+RRK   R+  A      +W+PALQSIP
Sbjct: 72  QMLEVMRGGKSNANQASYSPVSSLSLEQRLNLLRRKHLSRSNSAKGSCRRSWTPALQSIP 129

[Close]

BLAST of CmaCh19G007540 vs. TrEMBL
Match: B9HR24_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s14070g PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.2e-12
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 1


Query: 21  ASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLA 80
           ASP   FR + R R  ++ K SNLLE+IA+V+       +  +EDG VR+K+VV+K DL 
Sbjct: 12  ASPKRDFRAL-RGRNHRSLK-SNLLESIAQVNDGSVVSHTNEDEDGFVRMKLVVRKQDLK 71

Query: 81  QVLEAMAG--GGDGGGVAP-SSVSVEQRLALVRRKQFLRAKLAAA----TWSPALQSIPE 136
           ++LE M G         +P SS+S+EQRL L+RRK   R+  A      +W+PALQSIPE
Sbjct: 72  RMLELMRGCESSTNQSYSPASSLSLEQRLNLLRRKHLSRSNAAKGSCRRSWTPALQSIPE 131

[Close]

BLAST of CmaCh19G007540 vs. NCBI nr
Match: gi|700188041|gb|KGN43274.1| (hypothetical protein Csa_7G014600 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 3.5e-46
Identity = 104/127 (81.89%), Postives = 114/127 (89.76%), Query Frame = 1


Query: 14  MIDGKQTASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMV 73
           MI+GKQ ASPNG FRR+FRAR RK+AKA+ LLEAIAK SREG GFVS +EE+GVVRIKMV
Sbjct: 1   MIEGKQVASPNGTFRRLFRARCRKSAKANGLLEAIAKASREGAGFVSHSEENGVVRIKMV 60

Query: 74  VKKTDLAQVLEAMAGGGDGGG--VAPSSVSVEQRLALVRRKQFLRAKLAAATWSPALQSI 133
           VKKTDL QVLEAM GGGDGGG  VAP+SVS+E RL ++RRKQFLRAKLAAATWSPALQSI
Sbjct: 61  VKKTDLVQVLEAM-GGGDGGGGVVAPASVSMEHRLTVLRRKQFLRAKLAAATWSPALQSI 120

Query: 134 PEEIDSF 139
           PEEIDSF
Sbjct: 121 PEEIDSF 126

[Close]

BLAST of CmaCh19G007540 vs. NCBI nr
Match: gi|590684020|ref|XP_007041740.1| (Uncharacterized protein TCM_006557 [Theobroma cacao])

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-14
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 1


Query: 15  IDGKQTASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVV 74
           ++GK  ASP   F+++ R+R +K A  SNLLEAIA+ +  G G VS   EDGVVR+K+VV
Sbjct: 1   MEGK--ASPKREFKQV-RSRNQK-ALRSNLLEAIAEAN--GGGVVSHINEDGVVRMKIVV 60

Query: 75  KKTDLAQVLEAMAGGGDGGGVAPSSVSVEQRLALVRRKQFLRA---KLAAATWSPALQSI 134
           +K DL Q+L  + GGG        S SVE+RL L+RRK  +R+   K +   WSP LQSI
Sbjct: 61  RKQDLKQMLGMINGGGRISSNQSPSPSVEERLNLLRRKHLMRSNAVKKSPRPWSPELQSI 117

[Close]

BLAST of CmaCh19G007540 vs. NCBI nr
Match: gi|224080664|ref|XP_002306201.1| (hypothetical protein POPTR_0004s18500g [Populus trichocarpa])

HSP 1 Score: 82.4 bits (202), Expect = 6.7e-13
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 1


Query: 21  ASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLA 80
           ASP   FR + R R  ++ K SNL E+I +V+  G   VS   E+G VR+K+VV+K DL 
Sbjct: 12  ASPKRDFRALLRGRNHRSLK-SNLPESIGQVN--GGCVVSHTNENGFVRMKLVVRKQDLK 71

Query: 81  QVLEAMAGGGDGGGVAP----SSVSVEQRLALVRRKQFLRAKLAAA----TWSPALQSIP 134
           Q+LE M GG      A     SS+S+EQRL L+RRK   R+  A      +W+PALQSIP
Sbjct: 72  QMLEVMRGGKSNANQASYSPVSSLSLEQRLNLLRRKHLSRSNSAKGSCRRSWTPALQSIP 129

[Close]

BLAST of CmaCh19G007540 vs. NCBI nr
Match: gi|224103145|ref|XP_002312942.1| (hypothetical protein POPTR_0009s14070g [Populus trichocarpa])

HSP 1 Score: 79.0 bits (193), Expect = 7.4e-12
Identity = 55/122 (45.08%), Postives = 76/122 (62.30%), Query Frame = 1


Query: 21  ASPNGAFRRIFRARGRKNAKASNLLEAIAKVSREGTGFVSQNEEDGVVRIKMVVKKTDLA 80
           ASP   FR + R R  ++ K SNLLE+IA+V+       +  +EDG VR+K+VV+K DL 
Sbjct: 12  ASPKRDFRAL-RGRNHRSLK-SNLLESIAQVNDGSVVSHTNEDEDGFVRMKLVVRKQDLK 71

Query: 81  QVLEAMAG--GGDGGGVAP-SSVSVEQRLALVRRKQFLRAKLAAA----TWSPALQSIPE 136
           ++LE M G         +P SS+S+EQRL L+RRK   R+  A      +W+PALQSIPE
Sbjct: 72  RMLELMRGCESSTNQSYSPASSLSLEQRLNLLRRKHLSRSNAAKGSCRRSWTPALQSIPE 131

[Close]

BLAST of CmaCh19G007540 vs. NCBI nr
Match: gi|763765200|gb|KJB32454.1| (hypothetical protein B456_005G255400 [Gossypium raimondii])

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 57/134 (42.54%), Postives = 77/134 (57.46%), Query Frame = 1


Query: 15  IDGKQTASPNGAFRRIFRARGRKNAKASN---LLEAIAKVS-REGTGFVSQNEEDGVVRI 74
           ++GK  ASP   F++      +   ++SN   LLEAIA  S   G G VS   E+G +R+
Sbjct: 1   MEGK--ASPKREFKQSKSRNQKSLTRSSNNSYLLEAIANASNNRGGGVVSHIHENGTLRV 60

Query: 75  KMVVKKTDLAQVLEAMAGGGDGGG------VAPSSVSVEQRLALVRRKQFLRA----KLA 134
           K+VVKK DL Q+L  + GG            +P S+SVE+RL L+R+KQ LR+    K +
Sbjct: 61  KIVVKKQDLRQMLGIINGGTGKNNNNYYYQSSPPSISVEERLNLLRKKQLLRSNAIKKKS 120

The following BLAST results are available for this feature:

BLAST of CmaCh19G007540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh19G007540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2L8_CUCSA	2.5e-46	81.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G014600 PE=4 SV=1	[more]
A0A061DZR6_THECC	1.5e-14	49.59	Uncharacterized protein OS=Theobroma cacao GN=TCM_006557 PE=4 SV=1	[more]
F6I0Y0_VITVI	4.2e-14	50.45	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g02880 PE=4 SV=...	[more]
B9H1L6_POPTR	4.7e-13	46.28	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s18500g PE=4 SV=1	[more]
B9HR24_POPTR	5.2e-12	45.08	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s14070g PE=4 SV=1	[more]

BLAST of CmaCh19G007540 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh19G007540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188041\|gb\|KGN43274.1\|	3.5e-46	81.89	hypothetical protein Csa_7G014600 [Cucumis sativus]	[more]
gi\|590684020\|ref\|XP_007041740.1\|	2.1e-14	49.59	Uncharacterized protein TCM_006557 [Theobroma cacao]	[more]
gi\|224080664\|ref\|XP_002306201.1\|	6.7e-13	46.28	hypothetical protein POPTR_0004s18500g [Populus trichocarpa]	[more]
gi\|224103145\|ref\|XP_002312942.1\|	7.4e-12	45.08	hypothetical protein POPTR_0009s14070g [Populus trichocarpa]	[more]
gi\|763765200\|gb\|KJB32454.1\|	2.2e-11	42.54	hypothetical protein B456_005G255400 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh19G007540.1	CmaCh19G007540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33148	FAMILY NOT NAMED	coord: 28..135 score: 2.2
None	No IPR available	PANTHER	PTHR33148:SF4	SUBFAMILY NOT NAMED	coord: 28..135 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh19G007540	Cla015806	Watermelon (97103) v1	cmawmB503
CmaCh19G007540	Csa7G014600	Cucumber (Chinese Long) v2	cmacuB527
CmaCh19G007540	MELO3C013332	Melon (DHL92) v3.5.1	cmameB462
CmaCh19G007540	ClCG02G003900	Watermelon (Charleston Gray)	cmawcgB460
CmaCh19G007540	CSPI07G01180	Wild cucumber (PI 183967)	cmacpiB533
CmaCh19G007540	CmoCh19G007670	Cucurbita moschata (Rifu)	cmacmoB508
CmaCh19G007540	Cp4.1LG15g06090	Cucurbita pepo (Zucchini)	cmacpeB522
CmaCh19G007540	MELO3C013332.2	Melon (DHL92) v3.6.1	cmamedB536
CmaCh19G007540	CsaV3_7G001230	Cucumber (Chinese Long) v3	cmacucB0638
CmaCh19G007540	Cla97C02G030710	Watermelon (97103) v2	cmawmbB531
CmaCh19G007540	Bhi05G001450	Wax gourd	cmawgoB0652
CmaCh19G007540	CsGy7G001000	Cucumber (Gy14) v2	cgybcmaB944

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh19G007540	Silver-seed gourd	carcmaB0485
CmaCh19G007540	Silver-seed gourd	carcmaB1119
CmaCh19G007540	Silver-seed gourd	carcmaB1470
CmaCh19G007540	Cucurbita maxima (Rimu)	cmacmaB151
CmaCh19G007540	Cucurbita maxima (Rimu)	cmacmaB444
CmaCh19G007540	Cucurbita maxima (Rimu)	cmacmaB448
CmaCh19G007540	Cucumber (Gy14) v1	cgycmaB1027
CmaCh19G007540	Cucurbita moschata (Rifu)	cmacmoB492
CmaCh19G007540	Cucurbita moschata (Rifu)	cmacmoB516
CmaCh19G007540	Cucurbita moschata (Rifu)	cmacmoB522
CmaCh19G007540	Cucurbita pepo (Zucchini)	cmacpeB526
CmaCh19G007540	Cucurbita pepo (Zucchini)	cmacpeB537
CmaCh19G007540	Cucurbita pepo (Zucchini)	cmacpeB552
CmaCh19G007540	Bottle gourd (USVL1VR-Ls)	cmalsiB472