CmoCh18G012440 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGGTAACCCCACACTCACCTGCAATAACTCTCATTGTTTTGTTCAACAACAACAATGGCGGCCCTGGGTCTCTTTTCTTTTTTAATGAAACCCCACAGTTTCATTTCTCTCCTCACTGTGTTTTTGCTGATCTGTACAAATGAAATTAGGTTAGGAACCTCTGGAACTTCATCTTTTGCCTTGACTGGCTTTAAGTCTTATAACTTCACTATTTTATTGCTAATTTGCAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGTAGCATCTTCATCTTTCTTCCCCATTTGGCAAACATCAAACTTTTTTTTTTCTTTTCTCTGATGGGCCCTTCTATCTCCTCTGCAAATATTCGAGACCCAAATCTTCATCTTTGCCTTGTTTCTTTTTTCAATTTAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGTGACTGCATTATCTCTGTGAGAAAGCAAGCATGGTGAGTACAGGGCGAGATATTTTAATTCAACCTGTTGAGGATTGTCGTTAGGAGGGAGCTCACCTTGGCTAACTAAGGGGATGATTATGGGTTTATAAGTAAGGAATACATCTCCGATGGTATGAGGCCTTTTAGGAAAAGAGCTTATGCTTAAAGTGGACAATATCATACCATCATGGAGAGTTGTGATTCCTTATCTGGTATCAAAGTTATGCCCTTAACTTAGTCATGTGAATAGAATCCTTAAGTGTCGAATAAAAAAGTTGTGAGTCTCGAAAGTATAGTCAAATATGACTCAAGTGTCGAACAAAATGTGTACTTTGTTCGAGGACTCCAAAGAAGAAGTCAAGCTTAGATTAAGGGGAGGGAGTTCGAGGACTCCATAAGTCTCAAGGAAGGCTCTATAGTGTATTTTGTTAAAGGGAAGGAGTCTCACATTGGCTTATATTAAGGAGGTGATCATGAGTTTATAAGTAAGAAATACATCTCCGTTGGTATGAGGCCTTTCGGAGAAACCAAAAGCAAAACCATGAAAACTTATGTTCCAAGTGGATAATATCATACCATTGTGGAGGGTCGTGGTTCTTAACAAAACTCTCTCGTGTGTGAATGCTTTAATGGATTTGGTCACAGGAGGGTTGGCTTGTCAACCCAACTCAGTCCATTGGTTCTATCCTTCTCCAGCGAGTAGCAATTTCAGCTTCCTCCCATTACTGCAACGTTGAGACTGTGGAATCCAGATAGAATGCACAGGTTAATCAAATCATATCAACAACTAATTTGCTATTTCAGTTTCAAAGGAAAAGAAAATCATAAAGGAGAAGAAAAATAGGCAATACTTTTCCATTTTCATTGTGTTCGTACAAGGCTGTGACCTTTGCCATTAAACTATAGATGAATCAACATGCACTCTTCTCTCTCACCTACATTAGCTTAGTTTAACATCTGAATCAAGTACATGGATTCAAGTCTTTCAAATCTCCATTAGTGTATTATAAAATACCATACGAAGCTGTACTAAAAAAAATAAAAAAAATACCATAGGACGTTAAGAGAGAGAGAGAGAAAGAGAGAAGTAAATGTAGCAGATGGGCATTAAATACTGACTTTTTTGGTGACAGGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGTAAGCTGAATTCATGAGCAGTCTCTTGCCTCATTTAATTTGATGTATCAGTCATTAAGAACTGAGACATGATGTGAAATAAAATATATATCATAATGTACCTGCTTTTATTCTCTTTACTTTCACCTCGTATAGCTATCTTATTCATGTGCTTCACTTAAAGGAATTCAGCCAATAAGGATCAAACTATGTCTACAAAATTTGAATATAACTTGTAAAGAGATTATGAAAATTCACCGTGTTGATGACTAAGACATCAAACTCAGAAGCCCATTTAGAAAAAGACTCGCTTGCTTATTTCTCCTTTTTTCCTGCAAGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG
BLAST of CmoCh18G012440 vs. Swiss-Prot
Match: DAPB3_ARATH (Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.8e-08 Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
BLAST of CmoCh18G012440 vs. TrEMBL
Match: A0A0P0VSI0_ORYSJ (Os03g0117000 protein OS=Oryza sativa subsp. japonica GN=Os03g0117000 PE=4 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12 Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1
BLAST of CmoCh18G012440 vs. TrEMBL
Match: A0A0A0L5T6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180330 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09 Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1
BLAST of CmoCh18G012440 vs. TrEMBL
Match: A0A0B0MX12_GOSAR (Putative dihydrodipicolinate reductase 3, chloroplastic-like protein OS=Gossypium arboreum GN=F383_29928 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07 Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmoCh18G012440 vs. TrEMBL
Match: B9R9G4_RICCO (Dihydrodipicolinate reductase, putative OS=Ricinus communis GN=RCOM_1497080 PE=4 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07 Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
BLAST of CmoCh18G012440 vs. TrEMBL
Match: U5DD61_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00069p00125390 PE=4 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07 Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1
BLAST of CmoCh18G012440 vs. TAIR10
Match: AT5G52100.1 (AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant) HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09 Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|937907066|dbj|BAS81986.1| (Os03g0117000 [Oryza sativa Japonica Group]) HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12 Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1
BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|449446063|ref|XP_004140791.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Cucumis sativus]) HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09 Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1
BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|659077383|ref|XP_008439176.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09 Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1
BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|659077385|ref|XP_008439177.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X3 [Cucumis melo]) HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09 Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1
BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|659077380|ref|XP_008439174.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09 Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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