CmoCh18G012440 (gene) Cucurbita moschata (Rifu)

NameCmoCh18G012440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Dihydrodipicolinate reductase, putative) (1.3.1.26)
LocationCmo_Chr18 : 12260590 .. 12262929 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGGTAACCCCACACTCACCTGCAATAACTCTCATTGTTTTGTTCAACAACAACAATGGCGGCCCTGGGTCTCTTTTCTTTTTTAATGAAACCCCACAGTTTCATTTCTCTCCTCACTGTGTTTTTGCTGATCTGTACAAATGAAATTAGGTTAGGAACCTCTGGAACTTCATCTTTTGCCTTGACTGGCTTTAAGTCTTATAACTTCACTATTTTATTGCTAATTTGCAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGTAGCATCTTCATCTTTCTTCCCCATTTGGCAAACATCAAACTTTTTTTTTTCTTTTCTCTGATGGGCCCTTCTATCTCCTCTGCAAATATTCGAGACCCAAATCTTCATCTTTGCCTTGTTTCTTTTTTCAATTTAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGTGACTGCATTATCTCTGTGAGAAAGCAAGCATGGTGAGTACAGGGCGAGATATTTTAATTCAACCTGTTGAGGATTGTCGTTAGGAGGGAGCTCACCTTGGCTAACTAAGGGGATGATTATGGGTTTATAAGTAAGGAATACATCTCCGATGGTATGAGGCCTTTTAGGAAAAGAGCTTATGCTTAAAGTGGACAATATCATACCATCATGGAGAGTTGTGATTCCTTATCTGGTATCAAAGTTATGCCCTTAACTTAGTCATGTGAATAGAATCCTTAAGTGTCGAATAAAAAAGTTGTGAGTCTCGAAAGTATAGTCAAATATGACTCAAGTGTCGAACAAAATGTGTACTTTGTTCGAGGACTCCAAAGAAGAAGTCAAGCTTAGATTAAGGGGAGGGAGTTCGAGGACTCCATAAGTCTCAAGGAAGGCTCTATAGTGTATTTTGTTAAAGGGAAGGAGTCTCACATTGGCTTATATTAAGGAGGTGATCATGAGTTTATAAGTAAGAAATACATCTCCGTTGGTATGAGGCCTTTCGGAGAAACCAAAAGCAAAACCATGAAAACTTATGTTCCAAGTGGATAATATCATACCATTGTGGAGGGTCGTGGTTCTTAACAAAACTCTCTCGTGTGTGAATGCTTTAATGGATTTGGTCACAGGAGGGTTGGCTTGTCAACCCAACTCAGTCCATTGGTTCTATCCTTCTCCAGCGAGTAGCAATTTCAGCTTCCTCCCATTACTGCAACGTTGAGACTGTGGAATCCAGATAGAATGCACAGGTTAATCAAATCATATCAACAACTAATTTGCTATTTCAGTTTCAAAGGAAAAGAAAATCATAAAGGAGAAGAAAAATAGGCAATACTTTTCCATTTTCATTGTGTTCGTACAAGGCTGTGACCTTTGCCATTAAACTATAGATGAATCAACATGCACTCTTCTCTCTCACCTACATTAGCTTAGTTTAACATCTGAATCAAGTACATGGATTCAAGTCTTTCAAATCTCCATTAGTGTATTATAAAATACCATACGAAGCTGTACTAAAAAAAATAAAAAAAATACCATAGGACGTTAAGAGAGAGAGAGAGAAAGAGAGAAGTAAATGTAGCAGATGGGCATTAAATACTGACTTTTTTGGTGACAGGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGTAAGCTGAATTCATGAGCAGTCTCTTGCCTCATTTAATTTGATGTATCAGTCATTAAGAACTGAGACATGATGTGAAATAAAATATATATCATAATGTACCTGCTTTTATTCTCTTTACTTTCACCTCGTATAGCTATCTTATTCATGTGCTTCACTTAAAGGAATTCAGCCAATAAGGATCAAACTATGTCTACAAAATTTGAATATAACTTGTAAAGAGATTATGAAAATTCACCGTGTTGATGACTAAGACATCAAACTCAGAAGCCCATTTAGAAAAAGACTCGCTTGCTTATTTCTCCTTTTTTCCTGCAAGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG

mRNA sequence

ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG

Coding sequence (CDS)

ATGACGCAGAAGCAACAACCCAATTCTAAGAACATTGTGATCCTGTCGCTTTCGCATGACCTCGAATTTGCAATTACAAATGGGCTTATCTTCTTTGGGAAATTAGAGAAGAAACAGAGCTTGGAAACCAACAACAATGGCGGCCCTGGCTTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGCAAAGGGACAAGATGTTGGAGAAGATCGAGTTCGAGTGTACAGCCTAG
BLAST of CmoCh18G012440 vs. Swiss-Prot
Match: DAPB3_ARATH (Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis thaliana GN=DAPB3 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-08
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +T
Sbjct: 96  LGSISQGKEVGVVIDFTDPSTVYENVKQATAFGMKSVVYVPRIKPET 142

BLAST of CmoCh18G012440 vs. TrEMBL
Match: A0A0P0VSI0_ORYSJ (Os03g0117000 protein OS=Oryza sativa subsp. japonica GN=Os03g0117000 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------- 134
           L S  +S+ TGVV DF++PS VY+NVKQA +FG+ S VYVP I++DT             
Sbjct: 129 LGSIAQSRATGVVVDFSEPSTVYDNVKQAAAFGLNSVVYVPNIELDTVTELSAFCEKASM 188

Query: 135 DVPSSDASQIANNLSNLGQNCNREDI 147
           D+PS DA QIANN+S+LGQ  NRED+
Sbjct: 189 DLPSQDAIQIANNISDLGQIYNREDL 214

BLAST of CmoCh18G012440 vs. TrEMBL
Match: A0A0A0L5T6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180330 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +SKETGVV DFT+PSKVYENVKQAT+FGMRS VYVP +KVDT
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDT 144

BLAST of CmoCh18G012440 vs. TrEMBL
Match: A0A0B0MX12_GOSAR (Putative dihydrodipicolinate reductase 3, chloroplastic-like protein OS=Gossypium arboreum GN=F383_29928 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +SKETGVV DFTQPS VY+NVKQAT+FG+RS VYVP I VDT
Sbjct: 98  LGSISQSKETGVVVDFTQPSAVYDNVKQATAFGLRSVVYVPRITVDT 144

BLAST of CmoCh18G012440 vs. TrEMBL
Match: B9R9G4_RICCO (Dihydrodipicolinate reductase, putative OS=Ricinus communis GN=RCOM_1497080 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +SKETGVV DFT PS VY+NVKQAT+FGM+S VYVP IKVDT
Sbjct: 98  LGSISQSKETGVVIDFTDPSTVYDNVKQATAFGMKSIVYVPRIKVDT 144

BLAST of CmoCh18G012440 vs. TrEMBL
Match: U5DD61_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00069p00125390 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +S+ TGVV DFT+PS VY+NVKQAT+FGMRS VYVPG+K+DT
Sbjct: 94  LGSISQSQATGVVVDFTEPSTVYDNVKQATAFGMRSVVYVPGMKLDT 140

BLAST of CmoCh18G012440 vs. TAIR10
Match: AT5G52100.1 (AT5G52100.1 Dihydrodipicolinate reductase, bacterial/plant)

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +T
Sbjct: 96  LGSISQGKEVGVVIDFTDPSTVYENVKQATAFGMKSVVYVPRIKPET 142

BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|937907066|dbj|BAS81986.1| (Os03g0117000 [Oryza sativa Japonica Group])

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------- 134
           L S  +S+ TGVV DF++PS VY+NVKQA +FG+ S VYVP I++DT             
Sbjct: 129 LGSIAQSRATGVVVDFSEPSTVYDNVKQAAAFGLNSVVYVPNIELDTVTELSAFCEKASM 188

Query: 135 DVPSSDASQIANNLSNLGQNCNREDI 147
           D+PS DA QIANN+S+LGQ  NRED+
Sbjct: 189 DLPSQDAIQIANNISDLGQIYNREDL 214

BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|449446063|ref|XP_004140791.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +SKETGVV DFT+PSKVYENVKQAT+FGMRS VYVP +KVDT
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDT 144

BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|659077383|ref|XP_008439176.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +SKETGVV DFT+PSKVYENVKQAT+FGMRS VYVP +KVDT
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDT 144

BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|659077385|ref|XP_008439177.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +SKETGVV DFT+PSKVYENVKQAT+FGMRS VYVP +KVDT
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDT 144

BLAST of CmoCh18G012440 vs. NCBI nr
Match: gi|659077380|ref|XP_008439174.1| (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-09
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1

Query: 75  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT 121
           L S  +SKETGVV DFT+PSKVYENVKQAT+FGMRS VYVP +KVDT
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDT 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
DAPB3_ARATH7.8e-0868.09Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis th... [more]
Match NameE-valueIdentityDescription
A0A0P0VSI0_ORYSJ3.7e-1253.49Os03g0117000 protein OS=Oryza sativa subsp. japonica GN=Os03g0117000 PE=4 SV=1[more]
A0A0A0L5T6_CUCSA4.9e-0978.72Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180330 PE=4 SV=1[more]
A0A0B0MX12_GOSAR1.6e-0774.47Putative dihydrodipicolinate reductase 3, chloroplastic-like protein OS=Gossypiu... [more]
B9R9G4_RICCO1.6e-0774.47Dihydrodipicolinate reductase, putative OS=Ricinus communis GN=RCOM_1497080 PE=4... [more]
U5DD61_AMBTC2.7e-0770.21Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00069p00125390 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT5G52100.14.4e-0968.09 Dihydrodipicolinate reductase, bacterial/plant[more]
Match NameE-valueIdentityDescription
gi|937907066|dbj|BAS81986.1|5.2e-1253.49Os03g0117000 [Oryza sativa Japonica Group][more]
gi|449446063|ref|XP_004140791.1|7.1e-0978.72PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic ... [more]
gi|659077383|ref|XP_008439176.1|7.1e-0978.72PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic ... [more]
gi|659077385|ref|XP_008439177.1|7.1e-0978.72PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic ... [more]
gi|659077380|ref|XP_008439174.1|7.1e-0978.72PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023940DHDPR_bac
Vocabulary: Molecular Function
TermDefinition
GO:00088394-hydroxy-tetrahydrodipicolinate reductase
Vocabulary: Biological Process
TermDefinition
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0055114oxidation-reduction process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh18G012440.1CmoCh18G012440.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023940Dihydrodipicolinate reductasePANTHERPTHR20836DIHYDRODIPICOLINATE REDUCTASEcoord: 81..120
score: 1.4
NoneNo IPR availablePANTHERPTHR20836:SF24-HYDROXY-TETRAHYDRODIPICOLINATE REDUCTASE 3, CHLOROPLASTIC-RELATEDcoord: 81..120
score: 1.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh18G012440CmoCh16G001540Cucurbita moschata (Rifu)cmocmoB275