Carg26819 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26819
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	4-hydroxy-tetrahydrodipicolinate reductase
Location	Cucurbita_argyrosperma_scaffold_340 : 124888 .. 127833 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCCTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGGTAACCCCACACTCACCTGCAATAACTCTCCTTGTTTTGTTCAACAACAACAATGGCGGCCCTGGGTCTCTTTTCTTTTTTAATGAAACCCCACAGTTTCATTTCTCTCCTCACTGTGTTTTTGCTGATCTGTACAAATGAAATTAGGTTAGGAACCTCTGGAACTTCATCTTTTGCCTTGACTGGCTTTAAGTCTTATAACTTCACTATTTTATTGCTAATTTGCAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGTAGCATCTTCATCTTTCTTCCCCATTTGGCAAACATCGAACTTTTTTTTTTTTCTTTTCTCTGATGGTCCCTTCTATCTCCTCTGCAAATATTCGAGACCCAAATCTTCATCTTTGCCTTGTTTCTTTTTTCAATTTAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGTGACTGCATTATCTCTGTGAGAAAGCAAGCATGGTGAGTACAGGGCGAAATATTTTAATTCAACCTGTTGAGGATTGTTGTTAGGAGGGAGCTCACCTTCGCTAACTAAGGGGATGATTATGGGTTTATAAGTAAGGAATACATCTCCGATGGTATGAGGCCTTTTAGAAAAAGAGCTTATACTTAAAGTGGACAATATCATACCATCATGGAGAGTTGTGATTCCTTATCTGATATCAAAGTTATGCCCTTAACTTAGTCATGTGAACAAAATCCTTAAGTGTCGAATAAAAAAGTTGTGAGTCTCGAAAGTATAGTCAAATATGACTCAAGTGTCGAACAAAATGTGTACTTTGTTCGAGGACTCCAAAGAAGAAGTCAAGCTTAGATTAAGGGGAGGGAGTTTGAGGACTCCATAAGTCTCAAGGAAGGCTCTATAGTGTATTTTGTTAAAGGGAAGGAGTCTCACATTGGCTTATATTAAGGAGATGATCATGAGTTTATAAGTAAGAAATACATCTCCGTTGGTATGAGGCCTTTCGGAGAAACCAAAAGCAAAATCATGAAAACTTATGTTCCAAGTGGATAATATCATACCATTGTGGAGGGTCGTGGTTCTTAACAAAACTCTCTCGTGTGTGAATGCTTTAATGGATTTGATCACAGGAGGGTTGGCTTGTCAACCCAACTCAGTCCATTGGTTCTATCCTTCTCCAGCGAGTAGCAATTTCAGCTTCCTCCCATTACTGCAACGTTGAGACTGTGGAATCCAGATAGAATGCACAGGTTAATCAAATCATATCAACAACTAATTTGCTATTTCAGTTTCAAAGGAAAAGAAAATCATAAAGGAGAAGAAAAATAGGCAATACTTTTCCATTTTCATTGTGTTCGTACAAGGCTGCGACCTTTGTCATTAAACTATAGATGAATCAACATGCACTCTTCTCTCTCACCTACATTAGCTTAGTTTAACATCTGAATCAAGTACATGGATTCAAGTCTTTCAAATCTCCATTAGTGTATTATAAAATACCATATGAAGCTGTACTAAAAAAATATGAAAAATACCAGAGGACATTAAGAGAGAGAGAGAGAGAGTAGTAAATGTAGCAGATGGGCATTAAATACTGACTTTTTTGGTGACAGGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGTAAGCTGAATTCATGAGCAGTCTCTTGCCTCATTTAATTTGATGTATCAGTCATTAAGAATTGAGACATGATGCGAAATAAAATATGTATCATAATGTACCTGCTTTTATTCTCTTTACTTTCACCTCGTATAGCCATCTTATTCATGTGCTTCACTTAAAGGAATTCAGCCAATAAGACTATGTCTACAAAATTTGCATATAACTTATAAAGAGATTAGGAAAATTCACCATGTTGATGACTAAGACATCAAACTCAGAAGCCCATTTAGAAAAAGACTCGTTTGCTTATTTCTCCTTTTCAAGGCAAAGGGACAAGATGTTGAAGAAGATCGAGTTCGAGTGCACAGCCTAGTTCTTCCAGAGCATCCTTCCAGCACCAATGTCTACTTCTGAAGAGGTATGGTCTAGCTCGTGTTTCTGTTCTTATCTAACTAACATTAGGGAAATTGCGAGAGACTGGAAAATTTAATCTTTTCTACTCATTCAATGACCAGAGTGGTTGTTGGGAGGGAGTCTCACATTGGCGCTGGGGATGATTATGGGTTTATAACTAAGGAATACATCTCCATGGGTAAGCAAAGCCATGAGAGCCTATGCTCATAGTGGACAATATCATACCATTGTGGAGGTTTGTGGTTCCCAACATCTACCACCAAAGTGGTAGGTGTTTTCCTTCCCCAACACGTATCATGGCTTGCACAACAGGTTTACACTCTCAAACATGATGTTACAAACGTGCAATGTCTAATACCAGGCTTGTTATTGGCAATTAGAAAGGTGGTGCGTCTTGAGGTACCTAAACACACGTCAGTATATGCACCTCAAATTTTCTTGAATGATCTTCATCCTGTATTGTGTCAAACTTTCGCCTTTCTGTGCTACTTTGGCAGAATCTGGTATACGGCTGGGAGAAAATTTTATAAGGCTTCGAAGGCTCTCTCCTAGTAGCTCAATCTGAAACTTCATCTCCGTTGTTCATTGGACAGAGTGACCTTTCGACCTGATAACAAAAAGAAGAGTCAGGAGCTCAAGTTAGAGAGAATTGAAAGATAACTTTTTGTTTTTCATTTTCCTTGTGTACATGGAGAAATTAAATTATAGTTCTTAGAGAAGG

mRNA sequence

ATGGCGGCCCTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGAGGGTTGGCTTGTCAACCCAACTCAGTCCATTGGTTCTATCCTTCTCCAGCGAGTAGCAATTTCAGCTTCCTCCCATTACTGCAACGTTGAGACTGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGAATACATCTCCATGGGTAAGCAAAGCCATGAGAGCCTATGCTCATAGTGGACAATATCATACCATTGTGGAGGTTTACACTCTCAAACATGATGTTACAAACGTGCAATGTCTAATACCAGGCTTGTTATTGGCAATTAGAAAGGTGGTGCGTCTTGAGAATCTGGTATACGGCTGGGAGAAAATTTTATAAGGCTTCGAAGGCTCTCTCCTAGTAGCTCAATCTGAAACTTCATCTCCGTTGTTCATTGGACAGAGTGACCTTTCGACCTGATAACAAAAAGAAGAGTCAGGAGCTCAAGTTAGAGAGAATTGAAAGATAACTTTTTGTTTTTCATTTTCCTTGTGTACATGGAGAAATTAAATTATAGTTCTTAGAGAAGG

Coding sequence (CDS)

ATGGCGGCCCTGGCTTGCTCATTCCCTTTACAGTGTATAAAAAACTCAAGCAACCCACAATCACATCTTGAATTCGCTTCTCTTCAGAGTAATATCAAGTCAAAGGAAACAGGAGTTGTTGATTTTACCCAACCTTCTAAAGTATATGAGAACGTGAAGCAGGCAACTTCATTTGGTATGAGAAGTGAGGTTTATGTTCCTGGAATAAAAGTTGACACAGAGGGTTGGCTTGTCAACCCAACTCAGTCCATTGGTTCTATCCTTCTCCAGCGAGTAGCAATTTCAGCTTCCTCCCATTACTGCAACGTTGAGACTGATGTGCCATCTTCAGATGCATCTCAAATAGCTAACAACCTCTCAAACTTGGGCCAGAACTGCAACAGAGAAGATATTTCAACCGGAGACTGGAATACATCTCCATGGGTAAGCAAAGCCATGAGAGCCTATGCTCATAGTGGACAATATCATACCATTGTGGAGGTTTACACTCTCAAACATGATGTTACAAACGTGCAATGTCTAATACCAGGCTTGTTATTGGCAATTAGAAAGGTGGTGCGTCTTGAGAATCTGGTATACGGCTGGGAGAAAATTTTATAA

Protein sequence

MAALACSFPLQCIKNSSNPQSHLEFASLQSNIKSKETGVVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDTEGWLVNPTQSIGSILLQRVAISASSHYCNVETDVPSSDASQIANNLSNLGQNCNREDISTGDWNTSPWVSKAMRAYAHSGQYHTIVEVYTLKHDVTNVQCLIPGLLLAIRKVVRLENLVYGWEKIL

Homology

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BLAST of Carg26819 vs. NCBI nr
Match: XP_008439177.1 (PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 1.2e-43
Identity = 122/210 (58.10%), Postives = 136/210 (64.76%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT             
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 157

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE         D+PSSDA+QIANNLSNLGQ  
Sbjct: 158 GCLVAPTLSIGSILLQQAAISASFHYSNVEIVESREHAQDLPSSDAAQIANNLSNLGQIY 217

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHSG-QYHTIV----------------EVYTLKHDVT 200
           NREDIST        V    +     G + H++V                EVYTLKHD+ 
Sbjct: 218 NREDISTD-------VLARGQVIGEDGVRVHSLVLPGLPSSTNVYFSRPGEVYTLKHDII 277

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BLAST of Carg26819 vs. NCBI nr
Match: XP_004140791.1 (PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic [Cucumis sativus] >KGN57345.1 hypothetical protein Csa_3G180330 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.6e-43
Identity = 121/210 (57.62%), Postives = 136/210 (64.76%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT             
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 157

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY N+E         D+PSSDA+QIANNLSNLGQ  
Sbjct: 158 GCLVAPTLSIGSILLQQAAISASFHYSNIEIVESTAHAQDLPSSDAAQIANNLSNLGQIY 217

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHSG-QYHTIV----------------EVYTLKHDVT 200
           NREDIST        V    +     G + H++V                EVYTLKHD+ 
Sbjct: 218 NREDISTD-------VLARGQVIGEDGVRVHSLVLPGLPSSTNVYFSRPGEVYTLKHDII 277

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BLAST of Carg26819 vs. NCBI nr
Match: XP_022141086.1 (dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 179.9 bits (455), Expect = 8.7e-42
Identity = 117/209 (55.98%), Postives = 134/209 (64.11%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SK TG VVDFT+PSKVYENVKQA +FGMRS VYVP ++VDT             
Sbjct: 100 LGSISQSKATGVVVDFTEPSKVYENVKQAAAFGMRSVVYVPRLEVDTVAALSNFCEKASM 159

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE         D+PSSDA+QIANNLSNLGQ  
Sbjct: 160 GCLVAPTLSIGSILLQQAAISASFHYSNVEIVESRENAQDLPSSDAAQIANNLSNLGQIY 219

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHSGQYHTIV----------------EVYTLKHDVTN 200
           NREDIST        V++         + H++V                EVYTLKHD+ N
Sbjct: 220 NREDIST------EVVARGQVVGEDGVRVHSLVLPGLPSSTNVYFSRPGEVYTLKHDIIN 279

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BLAST of Carg26819 vs. NCBI nr
Match: XP_008234287.1 (PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Prunus mume])

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 116/204 (56.86%), Postives = 133/204 (65.20%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SK  G VVDFT+PSKVY+NVKQAT+FGMRS VYVP IK++T             
Sbjct: 101 LGSISQSKALGVVVDFTEPSKVYDNVKQATAFGMRSVVYVPQIKLETVSALSAFCEKASM 160

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE        TD PSSDA+QIANNLSNLGQ  
Sbjct: 161 GCLVAPTLSIGSILLQQAAISASFHYNNVEIVESRATATDFPSSDATQIANNLSNLGQIY 220

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHS-----------GQYHTIVEVYTLKHDVTNVQCLI 200
           NREDIST D      V        HS             +  + EVY+LKHD+T+VQCL+
Sbjct: 221 NREDIST-DVQARGQVLGEDGVRVHSLVLPGLPASTTVYFSRVGEVYSLKHDITDVQCLM 280

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BLAST of Carg26819 vs. NCBI nr
Match: XP_007221177.1 (dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Prunus persica] >ONI25230.1 hypothetical protein PRUPE_2G290400 [Prunus persica])

HSP 1 Score: 178.3 bits (451), Expect = 2.5e-41
Identity = 116/204 (56.86%), Postives = 133/204 (65.20%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SK  G VVDFT+PSKVY+NVKQAT+FGMRS VYVP IK++T             
Sbjct: 101 LGSISQSKALGVVVDFTEPSKVYDNVKQATAFGMRSVVYVPQIKLETVSALSAFCEKASM 160

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE        TD PSSDA+QIANNLSNLGQ  
Sbjct: 161 GCLVAPTLSIGSILLQQAAISASFHYNNVEIVESRATATDFPSSDATQIANNLSNLGQIY 220

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHS-----------GQYHTIVEVYTLKHDVTNVQCLI 200
           NREDIST D      V        HS             +  + EVY+LKHD+T+VQCL+
Sbjct: 221 NREDIST-DVQARGQVLGEDGVRVHSLVLPGLPASTTVYFSRLGEVYSLKHDITDVQCLM 280

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BLAST of Carg26819 vs. TAIR10
Match: AT5G52100.1 (Dihydrodipicolinate reductase, bacterial/plant)

HSP 1 Score: 154.5 bits (389), Expect = 7.1e-38
Identity = 105/203 (51.72%), Postives = 124/203 (61.08%), Query Frame = 0


Query: 28  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVD------------TE 87
           L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +            T 
Sbjct: 96  LGSISQGKEVGVVIDFTDPSTVYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATM 155

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+  I AS HY NVE         D+PS +A QIANN+SNLGQ  
Sbjct: 156 GCLVAPTLSIGSILLQQAVIMASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIY 215

Query: 148 NREDISTGDWNTSPWV--------SKAMRAYAHSGQ--YHTIVEVYTLKHDVTNVQCLIP 200
           NRED ST        +        S  +     S Q  + +  +VYT+KHD+ +V+ L+P
Sbjct: 216 NREDSSTDVQARGQVIGEDGVRVHSMVLPGLPSSTQVYFSSPGDVYTVKHDIIDVRSLMP 275

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BLAST of Carg26819 vs. Swiss-Prot
Match: sp|Q9FJ82|DAPB3_ARATH (Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DAPB3 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 105/203 (51.72%), Postives = 124/203 (61.08%), Query Frame = 0


Query: 28  LQSNIKSKETGVV-DFTQPSKVYENVKQATSFGMRSEVYVPGIKVD------------TE 87
           L S  + KE GVV DFT PS VYENVKQAT+FGM+S VYVP IK +            T 
Sbjct: 96  LGSISQGKEVGVVIDFTDPSTVYENVKQATAFGMKSVVYVPRIKPETVSALSALCDKATM 155

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+  I AS HY NVE         D+PS +A QIANN+SNLGQ  
Sbjct: 156 GCLVAPTLSIGSILLQQAVIMASFHYNNVELVESRPNAADLPSPEAIQIANNISNLGQIY 215

Query: 148 NREDISTGDWNTSPWV--------SKAMRAYAHSGQ--YHTIVEVYTLKHDVTNVQCLIP 200
           NRED ST        +        S  +     S Q  + +  +VYT+KHD+ +V+ L+P
Sbjct: 216 NREDSSTDVQARGQVIGEDGVRVHSMVLPGLPSSTQVYFSSPGDVYTVKHDIIDVRSLMP 275

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BLAST of Carg26819 vs. Swiss-Prot
Match: sp|Q10YI1|DAPB_TRIEI (4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=dapB PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-19
Identity = 69/199 (34.67%), Postives = 99/199 (49.75%), Query Frame = 0


Query: 39  VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVD------------TEGWLVNPTQSIGS 98
           +VDFT P  VYENV+ A ++G+R  V   G+  +            + G L+ P  SIG 
Sbjct: 82  MVDFTHPDSVYENVRSAIAYGVRPVVGTTGLSQEQIQDLAEFAEKASIGTLIIPNFSIGM 141

Query: 99  ILLQRVAISASSHYCNVE---------TDVPSSDASQIANNLSNLGQNCNREDISTGDWN 158
           +LLQ+ AI+AS H+ +VE          D PS  A + A  LS LG+  N  ++      
Sbjct: 142 VLLQQAAIAASKHFDHVEIIELHHNQKADAPSGTAIKTAQMLSELGKTYNVPNV-----E 201

Query: 159 TSPWVSKAMRAYAHSG-QYHTI----------------VEVYTLKHDVTNVQCLIPGLLL 200
            +  +  A    A  G + H++                 ++YTL+HD T+  C +PG+LL
Sbjct: 202 ETEKIEGARGCLAEEGIRIHSVRLPGLIAHQEVIFGGPGQIYTLRHDTTDRSCYMPGVLL 261

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BLAST of Carg26819 vs. Swiss-Prot
Match: sp|B8HRK9|DAPB_CYAP4 (4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=dapB PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-19
Identity = 68/194 (35.05%), Postives = 99/194 (51.03%), Query Frame = 0


Query: 39  VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVD------------TEGWLVNPTQSIGS 98
           +VDFT P+ VY+NV+ A ++G+R  V   G+  +            + G L+ P  SIG 
Sbjct: 82  MVDFTHPNSVYDNVRMAIAYGVRPVVGTTGLSPEQIRDLATFADKASMGCLIIPNFSIGM 141

Query: 99  ILLQRVAISASSHYCNVE---------TDVPSSDASQIANNLSNLGQNCNREDISTGDWN 158
           +LLQ+ AI AS ++ +VE          D PS  A Q A  L+ LG+  N   +   +  
Sbjct: 142 VLLQQAAIQASQYFDHVEIIELHHNQKADAPSGTALQTAQLLAELGKTYNPPAVKETEHL 201

Query: 159 TSPWVSKAMRAY-AHSGQYHTIV-----------EVYTLKHDVTNVQCLIPGLLLAIRKV 200
                S A      HS +   ++           +VYTL+HD ++  C +PG+LLAIRKV
Sbjct: 202 AGARGSLAEEGIRIHSVRLPGLIAHQEVIFGAPGQVYTLRHDTSDRSCYMPGVLLAIRKV 261

[Close]

BLAST of Carg26819 vs. Swiss-Prot
Match: sp|Q8YU19|DAPB_NOSS1 (4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=dapB PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-18
Identity = 66/194 (34.02%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 39  VVDFTQPSKVYENVKQATSFGMRSEVYVPGI------------KVDTEGWLVNPTQSIGS 98
           +VDFT P  VY+NV+ A ++G+R  V   G+            +  + G L+ P  SIG 
Sbjct: 85  IVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNLADFAEKASTGCLIIPNFSIGM 144

Query: 99  ILLQRVAISASSHYCNVE---------TDVPSSDASQIANNLSNLGQNCNREDISTGDWN 158
           +LLQ+ A++AS ++ +VE          D PS  A Q A  L+ LG+  N   +   +  
Sbjct: 145 VLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTAELLAELGKTFNSAIVEETEKI 204

Query: 159 TSPWVSKAMRAY-AHSGQYHTIV-----------EVYTLKHDVTNVQCLIPGLLLAIRKV 200
                S A      HS +   ++           ++YTL+HD ++  C +PG+LLAIRKV
Sbjct: 205 PGARGSLAEEGIRIHSVRLPGLIAHQEVIFGAPGQIYTLRHDTSDRACYMPGVLLAIRKV 264

[Close]

BLAST of Carg26819 vs. Swiss-Prot
Match: sp|Q3MFY8|DAPB_ANAVT (4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=dapB PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-18
Identity = 66/194 (34.02%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 39  VVDFTQPSKVYENVKQATSFGMRSEVYVPGI------------KVDTEGWLVNPTQSIGS 98
           +VDFT P  VY+NV+ A ++G+R  V   G+            +  + G L+ P  SIG 
Sbjct: 85  IVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQIQNLADFAEKASTGCLIIPNFSIGM 144

Query: 99  ILLQRVAISASSHYCNVE---------TDVPSSDASQIANNLSNLGQNCNREDISTGDWN 158
           +LLQ+ A++AS ++ +VE          D PS  A Q A  L+ LG+  N   +   +  
Sbjct: 145 VLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAIQTAELLAELGKTFNSAIVEETEKI 204

Query: 159 TSPWVSKAMRAY-AHSGQYHTIV-----------EVYTLKHDVTNVQCLIPGLLLAIRKV 200
                S A      HS +   ++           ++YTL+HD ++  C +PG+LLAIRKV
Sbjct: 205 PGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQIYTLRHDTSDRACYMPGVLLAIRKV 264

[Close]

BLAST of Carg26819 vs. TrEMBL
Match: tr|A0A1S3AYT9|A0A1S3AYT9_CUCME (dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484049 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.0e-44
Identity = 122/210 (58.10%), Postives = 136/210 (64.76%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT             
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 157

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE         D+PSSDA+QIANNLSNLGQ  
Sbjct: 158 GCLVAPTLSIGSILLQQAAISASFHYSNVEIVESREHAQDLPSSDAAQIANNLSNLGQIY 217

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHSG-QYHTIV----------------EVYTLKHDVT 200
           NREDIST        V    +     G + H++V                EVYTLKHD+ 
Sbjct: 218 NREDISTD-------VLARGQVIGEDGVRVHSLVLPGLPSSTNVYFSRPGEVYTLKHDII 277

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BLAST of Carg26819 vs. TrEMBL
Match: tr|A0A0A0L5T6|A0A0A0L5T6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180330 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 121/210 (57.62%), Postives = 136/210 (64.76%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SKETG VVDFT+PSKVYENVKQAT+FGMRS VYVP +KVDT             
Sbjct: 98  LGSISQSKETGVVVDFTEPSKVYENVKQATAFGMRSVVYVPRLKVDTVAALSNFCEKASM 157

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY N+E         D+PSSDA+QIANNLSNLGQ  
Sbjct: 158 GCLVAPTLSIGSILLQQAAISASFHYSNIEIVESTAHAQDLPSSDAAQIANNLSNLGQIY 217

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHSG-QYHTIV----------------EVYTLKHDVT 200
           NREDIST        V    +     G + H++V                EVYTLKHD+ 
Sbjct: 218 NREDISTD-------VLARGQVIGEDGVRVHSLVLPGLPSSTNVYFSRPGEVYTLKHDII 277

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BLAST of Carg26819 vs. TrEMBL
Match: tr|M5XA73|M5XA73_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G290400 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.7e-41
Identity = 116/204 (56.86%), Postives = 133/204 (65.20%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SK  G VVDFT+PSKVY+NVKQAT+FGMRS VYVP IK++T             
Sbjct: 101 LGSISQSKALGVVVDFTEPSKVYDNVKQATAFGMRSVVYVPQIKLETVSALSAFCEKASM 160

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE        TD PSSDA+QIANNLSNLGQ  
Sbjct: 161 GCLVAPTLSIGSILLQQAAISASFHYNNVEIVESRATATDFPSSDATQIANNLSNLGQIY 220

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHS-----------GQYHTIVEVYTLKHDVTNVQCLI 200
           NREDIST D      V        HS             +  + EVY+LKHD+T+VQCL+
Sbjct: 221 NREDIST-DVQARGQVLGEDGVRVHSLVLPGLPASTTVYFSRLGEVYSLKHDITDVQCLM 280

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BLAST of Carg26819 vs. TrEMBL
Match: tr|A0A1U8I2Q1|A0A1U8I2Q1_GOSHI (dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Gossypium hirsutum OX=3635 GN=LOC107892051 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 116/210 (55.24%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SKETG VVDFT+PS VY+NVKQAT+FG+RS VYVP I VDT             
Sbjct: 98  LGSISQSKETGVVVDFTKPSAVYDNVKQATAFGLRSVVYVPRITVDTISALSAFCEKASM 157

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE        TD+PS DA QIANNLSNLGQ  
Sbjct: 158 GCLVAPTLSIGSILLQQAAISASFHYNNVEIVESRAHATDLPSPDAIQIANNLSNLGQIY 217

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHSG-QYHTIV----------------EVYTLKHDVT 200
           NRED+ST        VS   +     G + H++V                EVYT+KHD+T
Sbjct: 218 NREDLSTD-------VSARGQVLGEDGVRVHSMVLPGLPSSTTVYFSGPGEVYTIKHDIT 277

[Close]

BLAST of Carg26819 vs. TrEMBL
Match: tr|A0A0D2RN22|A0A0D2RN22_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G046600 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 116/210 (55.24%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 28  LQSNIKSKETG-VVDFTQPSKVYENVKQATSFGMRSEVYVPGIKVDT------------E 87
           L S  +SKETG VVDFT+PS VY+NVKQAT+FG+RS VYVP I VDT             
Sbjct: 98  LGSISQSKETGVVVDFTKPSAVYDNVKQATAFGLRSVVYVPRITVDTISALSAFCEKASM 157

Query: 88  GWLVNPTQSIGSILLQRVAISASSHYCNVE--------TDVPSSDASQIANNLSNLGQNC 147
           G LV PT SIGSILLQ+ AISAS HY NVE        TD+PS DA QIANNLSNLGQ  
Sbjct: 158 GCLVAPTLSIGSILLQQAAISASFHYNNVEIVESRAHATDLPSPDAIQIANNLSNLGQIY 217

Query: 148 NREDISTGDWNTSPWVSKAMRAYAHSG-QYHTIV----------------EVYTLKHDVT 200
           NRED+ST        VS   +     G + H++V                EVYT+KHD+T
Sbjct: 218 NREDLSTD-------VSARGQVLGEDGVRVHSMVLPGLPSSTTVYFSGPGEVYTIKHDIT 277

The following BLAST results are available for this feature:

BLAST of Carg26819 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439177.1	1.2e-43	58.10	PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic isofor...	[more]
XP_004140791.1	1.6e-43	57.62	PREDICTED: putative 4-hydroxy-tetrahydrodipicolinate reductase 3, chloroplastic ...	[more]
XP_022141086.1	8.7e-42	55.98	dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X2 [Momor...	[more]
XP_008234287.1	1.9e-41	56.86	PREDICTED: dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Prunu...	[more]
XP_007221177.1	2.5e-41	56.86	dihydrodipicolinate reductase-like protein CRR1, chloroplastic [Prunus persica] ...	[more]

BLAST of Carg26819 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52100.1	7.1e-38	51.72	Dihydrodipicolinate reductase, bacterial/plant	[more]

BLAST of Carg26819 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FJ82\|DAPB3_ARATH	1.3e-36	51.72	Dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Arabidopsis th...	[more]
sp\|Q10YI1\|DAPB_TRIEI	2.4e-19	34.67	4-hydroxy-tetrahydrodipicolinate reductase OS=Trichodesmium erythraeum (strain I...	[more]
sp\|B8HRK9\|DAPB_CYAP4	4.1e-19	35.05	4-hydroxy-tetrahydrodipicolinate reductase OS=Cyanothece sp. (strain PCC 7425 / ...	[more]
sp\|Q8YU19\|DAPB_NOSS1	1.2e-18	34.02	4-hydroxy-tetrahydrodipicolinate reductase OS=Nostoc sp. (strain PCC 7120 / SAG ...	[more]
sp\|Q3MFY8\|DAPB_ANAVT	1.6e-18	34.02	4-hydroxy-tetrahydrodipicolinate reductase OS=Anabaena variabilis (strain ATCC 2...	[more]

BLAST of Carg26819 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYT9\|A0A1S3AYT9_CUCME	8.0e-44	58.10	dihydrodipicolinate reductase-like protein CRR1, chloroplastic isoform X3 OS=Cuc...	[more]
tr\|A0A0A0L5T6\|A0A0A0L5T6_CUCSA	1.0e-43	57.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180330 PE=4 SV=1	[more]
tr\|M5XA73\|M5XA73_PRUPE	1.7e-41	56.86	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G290400 PE=4 SV=1	[more]
tr\|A0A1U8I2Q1\|A0A1U8I2Q1_GOSHI	1.4e-40	55.24	dihydrodipicolinate reductase-like protein CRR1, chloroplastic OS=Gossypium hirs...	[more]
tr\|A0A0D2RN22\|A0A0D2RN22_GOSRA	1.4e-40	55.24	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G046600 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process
GO:0009089	lysine biosynthetic process via diaminopimelate

Vocabulary: **Molecular Function**
Term	Definition
GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase

Vocabulary: **INTERPRO**
Term	Definition
IPR023940	DHDPR_bac
IPR022663	DapB_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008839	4-hydroxy-tetrahydrodipicolinate reductase

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26819-RA	Carg26819-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.720		coord: 14..107 e-value: 7.1E-6 score: 28.1
None	No IPR available	PANTHER	PTHR20836:SF0	DIHYDRODIPICOLINATE REDUCTASE-LIKE PROTEIN CRR1, CHLOROPLASTIC	coord: 27..199
None	No IPR available	SUPERFAMILY	SSF55347	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	coord: 83..170
IPR022663	Dihydrodipicolinate reductase, C-terminal	PFAM	PF05173	DapB_C	coord: 104..199 e-value: 9.5E-5 score: 22.3
IPR023940	Dihydrodipicolinate reductase	PANTHER	PTHR20836	DIHYDRODIPICOLINATE REDUCTASE	coord: 27..199

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26819	Cla006207	Watermelon (97103) v1	carwmB0009
Carg26819	Csa3G180330	Cucumber (Chinese Long) v2	carcuB0007
Carg26819	MELO3C006876	Melon (DHL92) v3.5.1	carmeB0005
Carg26819	ClCG05G007820	Watermelon (Charleston Gray)	carwcgB0007
Carg26819	CSPI03G16640	Wild cucumber (PI 183967)	carcpiB0007
Carg26819	Cucsa.250960	Cucumber (Gy14) v1	carcgyB0006
Carg26819	CmaCh18G012230	Cucurbita maxima (Rimu)	carcmaB0011
Carg26819	CmaCh16G001470	Cucurbita maxima (Rimu)	carcmaB0010
Carg26819	CmoCh18G012440	Cucurbita moschata (Rifu)	carcmoB0011
Carg26819	CmoCh16G001540	Cucurbita moschata (Rifu)	carcmoB0010
Carg26819	Lsi05G012600	Bottle gourd (USVL1VR-Ls)	carlsiB006
Carg26819	Cp4.1LG09g01160	Cucurbita pepo (Zucchini)	carcpeB0008
Carg26819	Cp4.1LG14g05830	Cucurbita pepo (Zucchini)	carcpeB0009
Carg26819	CsGy3G016750	Cucumber (Gy14) v2	carcgybB0006
Carg26819	MELO3C006876.2	Melon (DHL92) v3.6.1	carmedB0006
Carg26819	CsaV3_3G016820	Cucumber (Chinese Long) v3	carcucB0007
Carg26819	Cla97C05G089790	Watermelon (97103) v2	carwmbB0006
Carg26819	Bhi01G000994	Wax gourd	carwgoB0008

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26819	Carg16698	Silver-seed gourd	carcarB005

The following block(s) are covering this gene:

None