CmoCh17G013090 (gene) Cucurbita moschata (Rifu)

NameCmoCh17G013090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPollen Ole e I family allergen
LocationCmo_Chr17 : 10248556 .. 10249238 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTTTTCGCTTACTCAGTTATCTTCTCCTTCTCTACTTCGCCACCGCCGCCGCAGGAGAAGCTGCATTATCGCGCCGTCCTGGATTTCTCTTCTCAAGAACCAGAGGAAGATGCACTCCAGAGTAAGATCTCCATTTCCTTTTTCTAAAAAATACACGTTCAAACACACTAATTCTTCTGAGAGGCTGCAGAGTTAGGTCGAAATCCTCTCATTAGCTCTAAATCGATTGAGATTTTCTCGTAGACATTTTCACAAACACATCGACGCATAAGCTTTTTTTTTTTTTTCTTTTACGTAATCGATCGGACTGAGAATGGTTCGATTATTTGAGGCGCCCAGGTTTTGGAGTAGTAGGAGAGAGGCTTGGCCTCGGATGGCGCCGGAATCGGCGACGGTGGCGAAGATTTTCGGATCGAGAGCTCACGAACGGTACGGATCTGAGATGACATTACTGGCGGCGGCGACGGTGGCATTGGCAGATGAGGAAGAGGAAGAGGAGGCGTTTGGTAGAGTAGTGAAGGAGGCAACCGCAGCACTGTTGAATTCGTATGCAAGAAGGGATTTCCCATACGCAGCTTGGGAGGTGAAAACATTGCTCATCAAAGCATTGGTATCTAAAGAGGCTGCTGCTCTTCAATCTCAACGCTTTGCCTTCGCTAACGAGTCCTGTAATTAG

mRNA sequence

ATGGAGACTTTTCGCTTACTCAGTTATCTTCTCCTTCTCTACTTCGCCACCGCCGCCGCAGGAGAAGCTGCATTATCGCGCCGTCCTGGATTTCTCTTCTCAAGAACCAGAGGAAGATGCACTCCAGAGTTTTGGAGTAGTAGGAGAGAGGCTTGGCCTCGGATGGCGCCGGAATCGGCGACGGTGGCGAAGATTTTCGGATCGAGAGCTCACGAACGGTACGGATCTGAGATGACATTACTGGCGGCGGCGACGGTGGCATTGGCAGATGAGGAAGAGGAAGAGGAGGCGTTTGGTAGAGTAGTGAAGGAGGCAACCGCAGCACTGTTGAATTCGTATGCAAGAAGGGATTTCCCATACGCAGCTTGGGAGGTGAAAACATTGCTCATCAAAGCATTGGTATCTAAAGAGGCTGCTGCTCTTCAATCTCAACGCTTTGCCTTCGCTAACGAGTCCTGTAATTAG

Coding sequence (CDS)

ATGGAGACTTTTCGCTTACTCAGTTATCTTCTCCTTCTCTACTTCGCCACCGCCGCCGCAGGAGAAGCTGCATTATCGCGCCGTCCTGGATTTCTCTTCTCAAGAACCAGAGGAAGATGCACTCCAGAGTTTTGGAGTAGTAGGAGAGAGGCTTGGCCTCGGATGGCGCCGGAATCGGCGACGGTGGCGAAGATTTTCGGATCGAGAGCTCACGAACGGTACGGATCTGAGATGACATTACTGGCGGCGGCGACGGTGGCATTGGCAGATGAGGAAGAGGAAGAGGAGGCGTTTGGTAGAGTAGTGAAGGAGGCAACCGCAGCACTGTTGAATTCGTATGCAAGAAGGGATTTCCCATACGCAGCTTGGGAGGTGAAAACATTGCTCATCAAAGCATTGGTATCTAAAGAGGCTGCTGCTCTTCAATCTCAACGCTTTGCCTTCGCTAACGAGTCCTGTAATTAG
BLAST of CmoCh17G013090 vs. TrEMBL
Match: A0A0A0K735_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375760 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.6e-54
Identity = 122/155 (78.71%), Postives = 130/155 (83.87%), Query Frame = 1

Query: 1   METFRLLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESA 60
           M++ R L+ LLLL FA A A E A +RRPGFLFSRT GRCT +FWSSR EAWPRMAPESA
Sbjct: 1   MDSSRFLNLLLLLCFAAATA-EVASARRPGFLFSRTTGRCTAQFWSSRSEAWPRMAPESA 60

Query: 61  TVAKIFGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRD-FP 120
           TVAKIFGSRAHERYGSEMTL+ AA  A    +EEEE FGRVVKEATAALLNSY RR  FP
Sbjct: 61  TVAKIFGSRAHERYGSEMTLMEAAAGA---GDEEEEVFGRVVKEATAALLNSYTRRRVFP 120

Query: 121 YAAWEVKTLLIKALVSKEAAALQSQRFAFANESCN 155
           Y+AWEVKTL IKALVSKEAA LQSQRFAFANESCN
Sbjct: 121 YSAWEVKTLFIKALVSKEAAVLQSQRFAFANESCN 151

BLAST of CmoCh17G013090 vs. TrEMBL
Match: B9H8M4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24600g PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 1.4e-42
Identity = 91/149 (61.07%), Postives = 117/149 (78.52%), Query Frame = 1

Query: 6   LLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESATVAKI 65
           LLS L+L+ F    A   A + RPGF++SRTRGRCTP+FWSSRRE+WPRM P+ ATV+K+
Sbjct: 6   LLSRLVLIIFVAHFAASKAAATRPGFIYSRTRGRCTPQFWSSRRESWPRMVPQRATVSKV 65

Query: 66  FGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRDFPYAAWEV 125
           FGS   ERYGS++TLL + T       ++E AF  ++K+A+AALLNSYAR  FPY+AWEV
Sbjct: 66  FGSGVFERYGSDVTLLESTT-----RNDDENAFAGLLKQASAALLNSYAREGFPYSAWEV 125

Query: 126 KTLLIKALVSKEAAALQSQRFAFANESCN 155
           KTLLI+ALVSKEAAA Q+++F+ ANE+CN
Sbjct: 126 KTLLIQALVSKEAAATQAKQFSVANEACN 149

BLAST of CmoCh17G013090 vs. TrEMBL
Match: M5VHK4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018256mg PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.5e-41
Identity = 87/145 (60.00%), Postives = 115/145 (79.31%), Query Frame = 1

Query: 10  LLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESATVAKIFGSR 69
           LLLL  A +     A ++RPGFLF+RT GRCTP +W SRREAWPRM P+++TV+K+FGSR
Sbjct: 12  LLLLLIACSVPSTTAKTQRPGFLFTRTTGRCTPHYWGSRREAWPRMVPQTSTVSKVFGSR 71

Query: 70  AHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRDFPYAAWEVKTLL 129
           A+ERY S++TLL A         +EE  + R++K+A+AALLNSYAR+ FPY+AWEVKTL+
Sbjct: 72  AYERYRSDLTLLEATV-----RNDEENVYPRLLKQASAALLNSYARKGFPYSAWEVKTLV 131

Query: 130 IKALVSKEAAALQSQRFAFANESCN 155
           I+ALVS +AAALQ+QRF+ ANE+C+
Sbjct: 132 IQALVSDKAAALQAQRFSVANEACH 151

BLAST of CmoCh17G013090 vs. TrEMBL
Match: B9GS12_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03930g PE=4 SV=2)

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-40
Identity = 86/149 (57.72%), Postives = 115/149 (77.18%), Query Frame = 1

Query: 6   LLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESATVAKI 65
           LLS L+L+ F    A    ++ RPGFL++RTRGRCTP+FWSSRREAWPRM P+ +TV+K+
Sbjct: 11  LLSRLVLIIFVAHFAASKVVATRPGFLYTRTRGRCTPQFWSSRREAWPRMVPQRSTVSKV 70

Query: 66  FGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRDFPYAAWEV 125
           FGS   ERY S++TLL +         ++E AF  ++K+A+AALLN+YAR+ FPY+AWEV
Sbjct: 71  FGSGVFERYRSDVTLLES-----TGRNDDENAFAGLLKQASAALLNTYARKGFPYSAWEV 130

Query: 126 KTLLIKALVSKEAAALQSQRFAFANESCN 155
           KTL I+ALVSKEAAA Q+++F+ ANE+CN
Sbjct: 131 KTLFIQALVSKEAAATQAKQFSIANEACN 154

BLAST of CmoCh17G013090 vs. TrEMBL
Match: D7U301_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03390 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 6.6e-40
Identity = 89/157 (56.69%), Postives = 121/157 (77.07%), Query Frame = 1

Query: 1   METFRLLSYLLLLYFATAAAGEAALSR---RPGFLFSRTRGRCTPEFWSSRREAWPRMAP 60
           ME+   LS L+L+ F +  A  A  ++   RPGFL++R+RGRCTP++W SR+EAWPRM P
Sbjct: 1   MESSAPLSTLVLILFLSCFAVTATAAQTQWRPGFLYTRSRGRCTPQYWGSRKEAWPRMVP 60

Query: 61  ESATVAKIFGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRD 120
           +++TVAK+FGSRA ER+ S+MTLL A     A +E  E  F  ++K+ +AAL+NSYAR+ 
Sbjct: 61  QTSTVAKVFGSRASERFRSDMTLLEAT----AQDESVENVFHGLLKQTSAALINSYARKG 120

Query: 121 FPYAAWEVKTLLIKALVSKEAAALQSQRFAFANESCN 155
           FPY+AWEVKTLLI+ALVS+EAAALQ++ F+ ANE+CN
Sbjct: 121 FPYSAWEVKTLLIQALVSEEAAALQAEHFSIANEACN 153

BLAST of CmoCh17G013090 vs. TAIR10
Match: AT2G20515.1 (AT2G20515.1 unknown protein)

HSP 1 Score: 142.5 bits (358), Expect = 2.2e-34
Identity = 76/150 (50.67%), Postives = 111/150 (74.00%), Query Frame = 1

Query: 6   LLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESATVAKI 65
           L+++ LL +FA    G+++ +R PGF+++R RGRCTP++WSS+REAWPRM PE +TV KI
Sbjct: 15  LVTFFLLCFFA----GDSSATR-PGFIYTRHRGRCTPQYWSSQREAWPRMVPERSTVEKI 74

Query: 66  FGSR-AHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRDFPYAAWE 125
           FG   A ER+ S++TL+ +     A  +EE  A+G ++K+  AAL+NSYAR+ F YA WE
Sbjct: 75  FGVMVAKERWRSDLTLVEST----ARNDEEGNAYGALLKQGIAALINSYARKSFSYAPWE 134

Query: 126 VKTLLIKALVSKEAAALQSQRFAFANESCN 155
           VKT+LI+A+VS+ AA  Q++ FA AN +C+
Sbjct: 135 VKTMLIQAMVSESAARRQAEHFAVANVACD 155

BLAST of CmoCh17G013090 vs. NCBI nr
Match: gi|449462451|ref|XP_004148954.1| (PREDICTED: uncharacterized protein LOC101220310 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 5.1e-54
Identity = 122/155 (78.71%), Postives = 130/155 (83.87%), Query Frame = 1

Query: 1   METFRLLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESA 60
           M++ R L+ LLLL FA A A E A +RRPGFLFSRT GRCT +FWSSR EAWPRMAPESA
Sbjct: 1   MDSSRFLNLLLLLCFAAATA-EVASARRPGFLFSRTTGRCTAQFWSSRSEAWPRMAPESA 60

Query: 61  TVAKIFGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRD-FP 120
           TVAKIFGSRAHERYGSEMTL+ AA  A    +EEEE FGRVVKEATAALLNSY RR  FP
Sbjct: 61  TVAKIFGSRAHERYGSEMTLMEAAAGA---GDEEEEVFGRVVKEATAALLNSYTRRRVFP 120

Query: 121 YAAWEVKTLLIKALVSKEAAALQSQRFAFANESCN 155
           Y+AWEVKTL IKALVSKEAA LQSQRFAFANESCN
Sbjct: 121 YSAWEVKTLFIKALVSKEAAVLQSQRFAFANESCN 151

BLAST of CmoCh17G013090 vs. NCBI nr
Match: gi|659100748|ref|XP_008451248.1| (PREDICTED: uncharacterized protein LOC103492595 [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.4e-51
Identity = 120/154 (77.92%), Postives = 127/154 (82.47%), Query Frame = 1

Query: 1   METFRLLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESA 60
           M++   L+ LLLL FA AA  E A +R PGFLFSRT GRCT +FWSSR EAWPRMAPESA
Sbjct: 33  MDSSPFLTLLLLLSFAAAA--EVASARPPGFLFSRTTGRCTAQFWSSRSEAWPRMAPESA 92

Query: 61  TVAKIFGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYA-RRDFP 120
           TVAKIFGSRA ERYGSEMTL+ AA  A      EEE FGRVVKEATAALLNSYA RRDFP
Sbjct: 93  TVAKIFGSRARERYGSEMTLMEAAGGA------EEEVFGRVVKEATAALLNSYARRRDFP 152

Query: 121 YAAWEVKTLLIKALVSKEAAALQSQRFAFANESC 154
           Y+AWEVKTLLIKALVSKEAA LQSQRFAFANESC
Sbjct: 153 YSAWEVKTLLIKALVSKEAAVLQSQRFAFANESC 178

BLAST of CmoCh17G013090 vs. NCBI nr
Match: gi|224085635|ref|XP_002307644.1| (hypothetical protein POPTR_0005s24600g [Populus trichocarpa])

HSP 1 Score: 180.6 bits (457), Expect = 2.0e-42
Identity = 91/149 (61.07%), Postives = 117/149 (78.52%), Query Frame = 1

Query: 6   LLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESATVAKI 65
           LLS L+L+ F    A   A + RPGF++SRTRGRCTP+FWSSRRE+WPRM P+ ATV+K+
Sbjct: 6   LLSRLVLIIFVAHFAASKAAATRPGFIYSRTRGRCTPQFWSSRRESWPRMVPQRATVSKV 65

Query: 66  FGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRDFPYAAWEV 125
           FGS   ERYGS++TLL + T       ++E AF  ++K+A+AALLNSYAR  FPY+AWEV
Sbjct: 66  FGSGVFERYGSDVTLLESTT-----RNDDENAFAGLLKQASAALLNSYAREGFPYSAWEV 125

Query: 126 KTLLIKALVSKEAAALQSQRFAFANESCN 155
           KTLLI+ALVSKEAAA Q+++F+ ANE+CN
Sbjct: 126 KTLLIQALVSKEAAATQAKQFSVANEACN 149

BLAST of CmoCh17G013090 vs. NCBI nr
Match: gi|743920047|ref|XP_011004061.1| (PREDICTED: uncharacterized protein LOC105110658 [Populus euphratica])

HSP 1 Score: 179.5 bits (454), Expect = 4.5e-42
Identity = 90/149 (60.40%), Postives = 117/149 (78.52%), Query Frame = 1

Query: 6   LLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESATVAKI 65
           LLS L+L+ F    A   A + RPGF+++RTRGRCTP+FWSSRRE+WPRM P+ ATV+K+
Sbjct: 6   LLSRLVLIIFVAHFAASKAAATRPGFIYTRTRGRCTPQFWSSRRESWPRMVPQRATVSKV 65

Query: 66  FGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRDFPYAAWEV 125
           FGS   ERYGS++TLL + T       ++E AF  ++K+A+AALLNSYAR  FPY+AWEV
Sbjct: 66  FGSGVFERYGSDVTLLESTT-----RNDDENAFAGLLKQASAALLNSYAREGFPYSAWEV 125

Query: 126 KTLLIKALVSKEAAALQSQRFAFANESCN 155
           KTLLI+ALVSKEAAA Q+++F+ ANE+CN
Sbjct: 126 KTLLIQALVSKEAAAAQAKQFSVANEACN 149

BLAST of CmoCh17G013090 vs. NCBI nr
Match: gi|743839581|ref|XP_011025980.1| (PREDICTED: uncharacterized protein LOC105126722 [Populus euphratica])

HSP 1 Score: 179.1 bits (453), Expect = 5.9e-42
Identity = 90/149 (60.40%), Postives = 116/149 (77.85%), Query Frame = 1

Query: 6   LLSYLLLLYFATAAAGEAALSRRPGFLFSRTRGRCTPEFWSSRREAWPRMAPESATVAKI 65
           LLS LLL+ F    A   A + RPGF+++RTRGRCTP+FWSSRRE+WPRM P+ ATV+K+
Sbjct: 6   LLSRLLLIIFVAHFAASKAAATRPGFIYTRTRGRCTPQFWSSRRESWPRMVPQRATVSKV 65

Query: 66  FGSRAHERYGSEMTLLAAATVALADEEEEEEAFGRVVKEATAALLNSYARRDFPYAAWEV 125
           FGS   ERYGS++TLL + T       ++E AF  ++K+A+AALLNSYAR  FPY+AWEV
Sbjct: 66  FGSGVFERYGSDVTLLESTT-----RNDDENAFAGLLKQASAALLNSYAREGFPYSAWEV 125

Query: 126 KTLLIKALVSKEAAALQSQRFAFANESCN 155
           KTLLI+ALVSKEAAA Q+++F+  NE+CN
Sbjct: 126 KTLLIQALVSKEAAAAQAKQFSVTNEACN 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K735_CUCSA3.6e-5478.71Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375760 PE=4 SV=1[more]
B9H8M4_POPTR1.4e-4261.07Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s24600g PE=4 SV=1[more]
M5VHK4_PRUPE4.5e-4160.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018256mg PE=4 SV=1[more]
B9GS12_POPTR3.8e-4057.72Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s03930g PE=4 SV=2[more]
D7U301_VITVI6.6e-4056.69Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03390 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT2G20515.12.2e-3450.67 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449462451|ref|XP_004148954.1|5.1e-5478.71PREDICTED: uncharacterized protein LOC101220310 [Cucumis sativus][more]
gi|659100748|ref|XP_008451248.1|1.4e-5177.92PREDICTED: uncharacterized protein LOC103492595 [Cucumis melo][more]
gi|224085635|ref|XP_002307644.1|2.0e-4261.07hypothetical protein POPTR_0005s24600g [Populus trichocarpa][more]
gi|743920047|ref|XP_011004061.1|4.5e-4260.40PREDICTED: uncharacterized protein LOC105110658 [Populus euphratica][more]
gi|743839581|ref|XP_011025980.1|5.9e-4260.40PREDICTED: uncharacterized protein LOC105126722 [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G013090.1CmoCh17G013090.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33210FAMILY NOT NAMEDcoord: 1..153
score: 5.9
NoneNo IPR availablePANTHERPTHR33210:SF5SUBFAMILY NOT NAMEDcoord: 1..153
score: 5.9