CmoCh17G003730 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G003730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranslation elongation factor EF1B/ribosomal protein S6 family protein
LocationCmo_Chr17 : 2285975 .. 2287684 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCTGTCGTCATCTGTTCATTATCTTCAAATTTCGGCGATTCTTTGCTCTTTGAACTATTCCAACTGGTTTGAATCTAAGAGCCGAGAAGCGGAAATTATAGAAGCCGAGAATTCGTGGAGGTTTGTTTGAATGTCATTCTCTTCGATACCTTCTTTGCTTCAAGTGCTTTTTGAAGGTTCTCTGATATGTCACTCGAGGAACTTCTAAGAATCGAGAATTGAAACTCCTAAGCGTAGATATTGGAGACCAGTACAAAAATTTGATAGGAAGCTGCTCAGATATACTGATGTTTAATCTGCTTATATACTTCGTGAGTGTGAAAAATTTCTTGAGTGGACTTTTGGTTTTGATTCGCAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGGTGATTAATTCTATTCCATTTTGATCCATTCGTTGGCCTTCCTTTTAGAAGATTATGTTGGCTATGAACAGGAGTTATCAATTTCACTTTTGCCCTAATTTTGCAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAAGTAAGCTTACTTTCTGCTTGTTCTGGTCAAGTATGATTAATACAACACAATGAATAGGGAGTTGATGTTTTTATCATTAACACAGGAAGAAAAAGGTTGTATTTATTTAGTTTGTGTAATTTTTCTTGCCCAACTATTGTCAAAAGAAGGCAAAAGTTTCATCTTGTATTTGTTTATATTTGAAGTGGTGTATTTCCTTTCTTGTCACTGCAGTGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCATGGTAATGCAACTATCTTGACAATTTGGCTCTCTTATGCTGTGACTTTGTGCTGCCTGCAAGGCTGTTTTCTCTAAACGGTGTTGTAGCGAACATGTAATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCATTTTAAAAACTTTGAGGGTAAGCTCGAATGGGAAAGCCCAAAGAGGACAATATCTGCTGACGGTGGGCTTTTAGAAACCAACCATCAGGTTCAGCAACTGCTTATTGATCCTAGTTGCATCAATGTTTCTTTGGAGATCTGTTGAACTTTCCTTCAGTTTCTGATTAAAATAAAAATGCTGTTGCAGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGCGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATACGCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAGAATAA

mRNA sequence

ATGTGTCTGTCGTCATCTGTTCATTATCTTCAAATTTCGGCGATTCTTTGCTCTTTGAACTATTCCAACTGGTTTGAATCTAAGAGCCGAGAAGCGGAAATTATAGAAGCCGAGAATTCGTGGAGCGTAGATATTGGAGACCAGTACAAAAATTTGATAGGAAGCTGCTCAGATATACTGATGTTTAATCTGCTTATATACTTCGTGAGTGTGAAAAATTTCTTGAGTGGACTTTTGGTTTTGATTCGCAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGATTATGTTGGCTATGAACAGGAGTTATCAATTTCACTTTTGCCCTAATTTTGCAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAATGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCATGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGCGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATACGCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAGAATAA

Coding sequence (CDS)

ATGTGTCTGTCGTCATCTGTTCATTATCTTCAAATTTCGGCGATTCTTTGCTCTTTGAACTATTCCAACTGGTTTGAATCTAAGAGCCGAGAAGCGGAAATTATAGAAGCCGAGAATTCGTGGAGCGTAGATATTGGAGACCAGTACAAAAATTTGATAGGAAGCTGCTCAGATATACTGATGTTTAATCTGCTTATATACTTCGTGAGTGTGAAAAATTTCTTGAGTGGACTTTTGGTTTTGATTCGCAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGATTATGTTGGCTATGAACAGGAGTTATCAATTTCACTTTTGCCCTAATTTTGCAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAATGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCATGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGCGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATACGCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAGAATAA
Homology
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BLAST of CmoCh17G003730 vs. Swiss-Prot
Match: RS6_ALCBS (30S ribosomal protein S6 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) GN=rpsF PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-19
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 140 MRHYEVVFLIHEKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 199
           MRHYEVVFL+H   +E+V ++ E+    + + KG I R+ DWG R+LAY I K + AHY+
Sbjct: 1   MRHYEVVFLVHPDQSEQVSAMVERYSAIVTDGKGTIHRVEDWGRRQLAYPINKIHKAHYV 60

Query: 200 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 241
           ++N E + + + E ++    ++ VIRHLVI+RD AITE  P
Sbjct: 61  MLNIECDGETLGELENTFRFNDAVIRHLVIRRDNAITEPSP 101

[Close]
BLAST of CmoCh17G003730 vs. Swiss-Prot
Match: RS6_CHRVO (30S ribosomal protein S6 OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rpsF PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-19
Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 140 MRHYEVVFLIHEKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 199
           MRHYE+VF++H   +E+V ++ E+  G +   +GKI RL DWG R+LAY I+K + AHY+
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGMVLAAEGKIHRLEDWGRRQLAYPIQKLHKAHYV 60

Query: 200 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 241
           LMN E +A+ + E +     ++ V+RHL IK D AI++  P
Sbjct: 61  LMNVECQAETLAEIEHAFKFNDAVLRHLTIKMDRAISDASP 101

[Close]
BLAST of CmoCh17G003730 vs. Swiss-Prot
Match: RS6_THICR (30S ribosomal protein S6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rpsF PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.6e-19
Identity = 49/113 (43.36%), Postives = 70/113 (61.95%), Query Frame = 1 

Query: 140 MRHYEVVFLIHEKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 199
           MRHYEVVFL+H   +E+V ++ E+  G I E  G I RL DWG R+LAY I K + AHYI
Sbjct: 1   MRHYEVVFLVHPDQSEQVPAMIERYRGLIEENGGAIHRLEDWGRRQLAYLINKVHKAHYI 60

Query: 200 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGD 253
           LMN E + + + E +++   ++ V+R + IKR+ A+TE      +    R GD
Sbjct: 61  LMNIECDQETLKELENLFYYNDAVLRDMFIKRNEAVTEPSVMASQKEDKRRGD 113

[Close]
BLAST of CmoCh17G003730 vs. Swiss-Prot
Match: RS6_LARHH (30S ribosomal protein S6 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsF PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.6e-19
Identity = 44/101 (43.56%), Postives = 66/101 (65.35%), Query Frame = 1 

Query: 140 MRHYEVVFLIHEKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 199
           MRHYE+VF++H   +E+V ++ E+  G +  + GKI RL DWG R+LAY I+K + AHY+
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMVERYKGMVLGQNGKIHRLEDWGRRQLAYPIQKIHKAHYV 60

Query: 200 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 241
           +MN E   + + E +     ++ V+RHL IK D A+TE  P
Sbjct: 61  MMNIECGKETLEEIEHAFKFNDAVLRHLTIKMDRAVTEASP 101

[Close]
BLAST of CmoCh17G003730 vs. Swiss-Prot
Match: RS6_ALKEH (30S ribosomal protein S6 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=rpsF PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.5e-18
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 1 

Query: 140 MRHYEVVFLIHEKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 199
           MRHYE+VF++H   +E+V S+ E+  G +    GK+ RL DWG R+LAY I K   AHY+
Sbjct: 1   MRHYEIVFMVHPDQSEQVPSMIERYTGIVESNGGKVHRLEDWGRRQLAYPINKLIKAHYV 60

Query: 200 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 241
           LMN E     ++E +S+   ++ VIR++V+ RD A+TE  P
Sbjct: 61  LMNVECGKDELDELESLFRFNDAVIRNMVLGRDEAVTEPSP 101

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BLAST of CmoCh17G003730 vs. TrEMBL
Match: A0A0A0KD50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324870 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.9e-81
Identity = 171/235 (72.77%), Postives = 196/235 (83.40%), Query Frame = 1 

Query: 91  VNFSPNLLMRKKIMLAMNRSYQFHFCPNFAEKLYEYLNLQLESESKVLQMRHYEVVFLIH 150
           + F P  ++ K+  +A +  +   F     EKLYEYLNLQLESESKV QMRHYE+VFLIH
Sbjct: 84  IGFFPEAVLLKEKKVAEDGQFLPEFADAEEEKLYEYLNLQLESESKVEQMRHYEIVFLIH 143

Query: 151 EKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWI 210
           EKNAEEVESV EKV GF+REKKGK+WRLSDWGMRRLAYKIKKA YAHYILMNFELEAKWI
Sbjct: 144 EKNAEEVESVIEKVQGFLREKKGKLWRLSDWGMRRLAYKIKKAKYAHYILMNFELEAKWI 203

Query: 211 NEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGDDYSEEEEEEDMDDYDSED 270
           NEFKSMLDMDERVIRHLVIKRD AITEDCPPPPEFHTLRAG D  ++ EE+DMDDY+S+D
Sbjct: 204 NEFKSMLDMDERVIRHLVIKRDTAITEDCPPPPEFHTLRAGIDDDDDNEEDDMDDYNSDD 263

Query: 271 ELDWDGEDELDDYGDDIEDGIIIVDGDDD-DDDSGSKAIKS-SAGSRDLRNRTKE 324
           E++WD E ELDDY + ++DGIIIVD D+D DD+S S   KS +AG+R LRNRTK+
Sbjct: 264 EMEWDDEAELDDYDEGLDDGIIIVDSDNDTDDNSISTTSKSTAAGNRGLRNRTKK 318

[Close]
BLAST of CmoCh17G003730 vs. TrEMBL
Match: D7SYH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00590 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.3e-61
Identity = 140/211 (66.35%), Postives = 163/211 (77.25%), Query Frame = 1 

Query: 115 FCPNFA----EKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVHGFIRE 174
           F P FA    E+LYE+LNLQLES+  V +MRHYEVV+LIHEK+ EEVE+VN KV  FIRE
Sbjct: 98  FLPEFADAEEEELYEFLNLQLESDLNVERMRHYEVVYLIHEKHDEEVENVNSKVQDFIRE 157

Query: 175 KKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIK 234
           KKGK+WRL+DWG+RRLAYKI+KA  AHYILMNFELEA+WIN+FK+MLD DERVIRHLVIK
Sbjct: 158 KKGKLWRLNDWGLRRLAYKIQKAKNAHYILMNFELEAQWINDFKTMLDQDERVIRHLVIK 217

Query: 235 RDAAITEDCPPPPEFHTLRAG-DDYSEEEEEEDMDDYDSEDELDWDGEDELD--DYGDDI 294
           RD AITEDCPPPPEFHTLRAG DDY +EE     DD D +DE DWDGE E+D   Y DD+
Sbjct: 218 RDEAITEDCPPPPEFHTLRAGTDDYDDEE-----DDVDYDDEDDWDGEGEVDSNSYSDDV 277

Query: 295 EDGIIIVDGDDDDDDSGSKAIKSSAGSRDLR 319
            D I+ V+ DD +D         + G R+LR
Sbjct: 278 VDVIVPVNSDDRED--------KNVGRRNLR 295

[Close]
BLAST of CmoCh17G003730 vs. TrEMBL
Match: A0A067K6R2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19040 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60
Identity = 139/216 (64.35%), Postives = 165/216 (76.39%), Query Frame = 1 

Query: 115 FCPNFA----EKLYEYLNLQLESESKVLQ-MRHYEVVFLIHEKNAEEVESVNEKVHGFIR 174
           F P FA    EKLYEYL+L+LESE    + +RHYEVV+LIHEK+AEEV  VNEKV  F+R
Sbjct: 113 FIPEFADAEEEKLYEYLSLELESELNAEERIRHYEVVYLIHEKHAEEVGKVNEKVEDFLR 172

Query: 175 EKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVI 234
           EKKGKIWRL+DWGMRRLAYKIKKA  AHYILMNFE+EAKWIN+FK+MLD DERVIRHLVI
Sbjct: 173 EKKGKIWRLNDWGMRRLAYKIKKATNAHYILMNFEIEAKWINDFKTMLDKDERVIRHLVI 232

Query: 235 KRDAAITEDCPPPPEFHTLRAGDDYSEEEEEEDMD-DYDSEDELDWDGEDELDDYGDDIE 294
           KRD AITEDCPPP EFHTLR G D ++E+++ED D DYD     DWDGE E++ Y DD E
Sbjct: 233 KRDEAITEDCPPPLEFHTLRGGMDDNDEDDDEDDDLDYDE----DWDGEGEMEGYDDDTE 292

Query: 295 DGIIIVDGDDDDDDSGSKAIKS-SAGSRDLRNRTKE 324
           DGI +++ +D DD    +  KS     +  RN+ +E
Sbjct: 293 DGITVINSNDIDDGRDDQNNKSIPVNDKGGRNQKRE 324

[Close]
BLAST of CmoCh17G003730 vs. TrEMBL
Match: A0A061EP44_THECC (Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobroma cacao GN=TCM_021419 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 7.0e-60
Identity = 138/229 (60.26%), Postives = 171/229 (74.67%), Query Frame = 1 

Query: 93  FSPNLLMRKKIMLAMNRSYQFHFCPNFAEKLYEYLNLQLESESKVLQMRHYEVVFLIHEK 152
           F P  ++ K+  +  +      F  +  ++LYE LNLQL+S   V +MRHYEVV+LIHEK
Sbjct: 174 FFPEAVLLKEKKVQEDGKLLPEFADDEEQELYESLNLQLQSALNVERMRHYEVVYLIHEK 233

Query: 153 NAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINE 212
           +AEEV SVNEKV  F+REK+G++WRL+DWG+RRLAYKIKKA  AHYILMNFELEA+WINE
Sbjct: 234 HAEEVGSVNEKVQDFLREKRGRLWRLNDWGLRRLAYKIKKAKNAHYILMNFELEARWINE 293

Query: 213 FKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHTLRA-GDDYSEEEEEEDMDDYDSEDE 272
           FK+MLD DERVIRHLVIKRD AITEDCPPPPE+HTLRA GDDY EEE++ D D Y+ ED+
Sbjct: 294 FKTMLDKDERVIRHLVIKRDEAITEDCPPPPEWHTLRAGGDDYDEEEDDADYDVYEVEDD 353

Query: 273 ----LDWDGEDELDDYGDD-IEDGIIIVDGDDDDDDSGSKAIKSSAGSR 316
                DWDGED+ D + D+ +EDGII    DD +D +   A  ++ G R
Sbjct: 354 EDLGEDWDGEDDSDIFEDNGVEDGIIAGKDDDIEDLNNKSASVANTGKR 402

[Close]
BLAST of CmoCh17G003730 vs. TrEMBL
Match: M1BB45_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015968 PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.7e-59
Identity = 132/195 (67.69%), Postives = 155/195 (79.49%), Query Frame = 1 

Query: 117 PNFA----EKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVHGFIREKK 176
           P+FA    E+L+E LNLQLES+  V QMRHYEVV+LIHE   +EVESVN KV  F++EKK
Sbjct: 97  PDFADAEEEELFEALNLQLESDLNVEQMRHYEVVYLIHEDREDEVESVNAKVQEFLKEKK 156

Query: 177 GKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRD 236
           G++WR SDWGMRRLAY+I+K + AHYILMNFELEAKWIN+FKSMLD DERVIRHLV+KRD
Sbjct: 157 GRLWRFSDWGMRRLAYRIQKTSRAHYILMNFELEAKWINDFKSMLDKDERVIRHLVMKRD 216

Query: 237 AAITEDCPPPPEFHTLRAGDDYSEEEEEEDMDDYDSEDELDWDGEDELD-DYGDDIEDGI 296
            A TEDCPPPPEFHT  AG D   +E EEDMDDYD  DE D +G+DE+D +  DD  DG+
Sbjct: 217 KAETEDCPPPPEFHTTGAGTD---DENEEDMDDYDDYDEDDLEGKDEIDMEMNDDDTDGV 276

Query: 297 IIVDGDDDDDDSGSK 307
           I+VD DDD DD  S+
Sbjct: 277 ILVDADDDIDDRNSR 288

[Close]
BLAST of CmoCh17G003730 vs. TAIR10
Match: AT3G17170.1 (AT3G17170.1 Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-56
Identity = 121/219 (55.25%), Postives = 168/219 (76.71%), Query Frame = 1 

Query: 117 PNFAE----KLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVHGFIREKK 176
           P FA+    +LY++L+LQL+S+    +MRHYEVV+LIHEK+AEEVES+N+KV  +++EKK
Sbjct: 93  PEFADAEEKELYQFLDLQLQSDLNEERMRHYEVVYLIHEKHAEEVESINQKVQDYLKEKK 152

Query: 177 GKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRD 236
           GK+WR SDWGMRRLAYKI+KA  AHYILMNFE+EAK++NEFK +LD DERVIRHLV+KRD
Sbjct: 153 GKVWRFSDWGMRRLAYKIQKAENAHYILMNFEIEAKYLNEFKGLLDSDERVIRHLVMKRD 212

Query: 237 AAITEDCPPPPEFHTLRAGDDYSEEEEEEDMDDYDSEDELDWDGEDELD----DYGDDIE 296
            AITEDCPPPPEFH++RAGD+Y +++EEE+++    EDE + +GEDE D    +Y  D +
Sbjct: 213 EAITEDCPPPPEFHSVRAGDEYYDDDEEEEIE----EDEDEGEGEDEEDADNIEYEVDDD 272

Query: 297 DGIIIV------DGDDDDDDSGSK---AIKSSAGSRDLR 319
             +++V      +G++++D +  +     KS+ G R+ R
Sbjct: 273 GNVVMVLYGDEEEGEEEEDGASEQEEGQDKSTNGRRETR 307

[Close]
BLAST of CmoCh17G003730 vs. NCBI nr
Match: gi|659116919|ref|XP_008458328.1| (PREDICTED: uncharacterized protein LOC103497776 [Cucumis melo])

HSP 1 Score: 312.0 bits (798), Expect = 1.2e-81
Identity = 167/233 (71.67%), Postives = 190/233 (81.55%), Query Frame = 1 

Query: 91  VNFSPNLLMRKKIMLAMNRSYQFHFCPNFAEKLYEYLNLQLESESKVLQMRHYEVVFLIH 150
           + F P  ++ K+  +A +  +   F     EKLYEYLNLQLESESKV QMRHYEVVFLIH
Sbjct: 91  IGFFPEAVLLKEKKVAEDGQFLPEFADAEEEKLYEYLNLQLESESKVEQMRHYEVVFLIH 150

Query: 151 EKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWI 210
           EKNAEEVESV EKV GF+REKKGK+WRLSDWGMRRLAYKIKKA YAHYILMNFELEAKWI
Sbjct: 151 EKNAEEVESVIEKVQGFLREKKGKVWRLSDWGMRRLAYKIKKAKYAHYILMNFELEAKWI 210

Query: 211 NEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGDDYSEEEEEEDMDDYDSED 270
           NEFKSMLDMDERVIRHLVIKRD AITEDCPPPPEFHTLRAG D  ++ EE+DMDDY+S D
Sbjct: 211 NEFKSMLDMDERVIRHLVIKRDTAITEDCPPPPEFHTLRAGVDDDDDNEEDDMDDYNSAD 270

Query: 271 ELDWDGEDELDDYGDDIEDGIIIVDGDDDDDDSGSKAIKSSAGSRDLRNRTKE 324
           E+DWD EDELDDY D  +DGIIIVD D+DD    + +  ++ G+  LRN+TK+
Sbjct: 271 EMDWDDEDELDDYDDGFDDGIIIVDSDNDDTSKSTTSKSTATGNIGLRNKTKK 323

[Close]
BLAST of CmoCh17G003730 vs. NCBI nr
Match: gi|449462132|ref|XP_004148795.1| (PREDICTED: probable dual specificity protein phosphatase DDB_G0281963 [Cucumis sativus])

HSP 1 Score: 310.8 bits (795), Expect = 2.7e-81
Identity = 171/235 (72.77%), Postives = 196/235 (83.40%), Query Frame = 1 

Query: 91  VNFSPNLLMRKKIMLAMNRSYQFHFCPNFAEKLYEYLNLQLESESKVLQMRHYEVVFLIH 150
           + F P  ++ K+  +A +  +   F     EKLYEYLNLQLESESKV QMRHYE+VFLIH
Sbjct: 84  IGFFPEAVLLKEKKVAEDGQFLPEFADAEEEKLYEYLNLQLESESKVEQMRHYEIVFLIH 143

Query: 151 EKNAEEVESVNEKVHGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWI 210
           EKNAEEVESV EKV GF+REKKGK+WRLSDWGMRRLAYKIKKA YAHYILMNFELEAKWI
Sbjct: 144 EKNAEEVESVIEKVQGFLREKKGKLWRLSDWGMRRLAYKIKKAKYAHYILMNFELEAKWI 203

Query: 211 NEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHTLRAGDDYSEEEEEEDMDDYDSED 270
           NEFKSMLDMDERVIRHLVIKRD AITEDCPPPPEFHTLRAG D  ++ EE+DMDDY+S+D
Sbjct: 204 NEFKSMLDMDERVIRHLVIKRDTAITEDCPPPPEFHTLRAGIDDDDDNEEDDMDDYNSDD 263

Query: 271 ELDWDGEDELDDYGDDIEDGIIIVDGDDD-DDDSGSKAIKS-SAGSRDLRNRTKE 324
           E++WD E ELDDY + ++DGIIIVD D+D DD+S S   KS +AG+R LRNRTK+
Sbjct: 264 EMEWDDEAELDDYDEGLDDGIIIVDSDNDTDDNSISTTSKSTAAGNRGLRNRTKK 318

[Close]
BLAST of CmoCh17G003730 vs. NCBI nr
Match: gi|225432037|ref|XP_002273724.1| (PREDICTED: uncharacterized protein LOC100243195 [Vitis vinifera])

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 140/211 (66.35%), Postives = 163/211 (77.25%), Query Frame = 1 

Query: 115 FCPNFA----EKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVHGFIRE 174
           F P FA    E+LYE+LNLQLES+  V +MRHYEVV+LIHEK+ EEVE+VN KV  FIRE
Sbjct: 98  FLPEFADAEEEELYEFLNLQLESDLNVERMRHYEVVYLIHEKHDEEVENVNSKVQDFIRE 157

Query: 175 KKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIK 234
           KKGK+WRL+DWG+RRLAYKI+KA  AHYILMNFELEA+WIN+FK+MLD DERVIRHLVIK
Sbjct: 158 KKGKLWRLNDWGLRRLAYKIQKAKNAHYILMNFELEAQWINDFKTMLDQDERVIRHLVIK 217

Query: 235 RDAAITEDCPPPPEFHTLRAG-DDYSEEEEEEDMDDYDSEDELDWDGEDELD--DYGDDI 294
           RD AITEDCPPPPEFHTLRAG DDY +EE     DD D +DE DWDGE E+D   Y DD+
Sbjct: 218 RDEAITEDCPPPPEFHTLRAGTDDYDDEE-----DDVDYDDEDDWDGEGEVDSNSYSDDV 277

Query: 295 EDGIIIVDGDDDDDDSGSKAIKSSAGSRDLR 319
            D I+ V+ DD +D         + G R+LR
Sbjct: 278 VDVIVPVNSDDRED--------KNVGRRNLR 295

[Close]
BLAST of CmoCh17G003730 vs. NCBI nr
Match: gi|802705666|ref|XP_012084128.1| (PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas])

HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60
Identity = 139/216 (64.35%), Postives = 165/216 (76.39%), Query Frame = 1 

Query: 115 FCPNFA----EKLYEYLNLQLESESKVLQ-MRHYEVVFLIHEKNAEEVESVNEKVHGFIR 174
           F P FA    EKLYEYL+L+LESE    + +RHYEVV+LIHEK+AEEV  VNEKV  F+R
Sbjct: 113 FIPEFADAEEEKLYEYLSLELESELNAEERIRHYEVVYLIHEKHAEEVGKVNEKVEDFLR 172

Query: 175 EKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVI 234
           EKKGKIWRL+DWGMRRLAYKIKKA  AHYILMNFE+EAKWIN+FK+MLD DERVIRHLVI
Sbjct: 173 EKKGKIWRLNDWGMRRLAYKIKKATNAHYILMNFEIEAKWINDFKTMLDKDERVIRHLVI 232

Query: 235 KRDAAITEDCPPPPEFHTLRAGDDYSEEEEEEDMD-DYDSEDELDWDGEDELDDYGDDIE 294
           KRD AITEDCPPP EFHTLR G D ++E+++ED D DYD     DWDGE E++ Y DD E
Sbjct: 233 KRDEAITEDCPPPLEFHTLRGGMDDNDEDDDEDDDLDYDE----DWDGEGEMEGYDDDTE 292

Query: 295 DGIIIVDGDDDDDDSGSKAIKS-SAGSRDLRNRTKE 324
           DGI +++ +D DD    +  KS     +  RN+ +E
Sbjct: 293 DGITVINSNDIDDGRDDQNNKSIPVNDKGGRNQKRE 324

[Close]
BLAST of CmoCh17G003730 vs. NCBI nr
Match: gi|1009172469|ref|XP_015867288.1| (PREDICTED: protein SET-like [Ziziphus jujuba])

HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60
Identity = 138/209 (66.03%), Postives = 164/209 (78.47%), Query Frame = 1 

Query: 117 PNFA----EKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVHGFIREKK 176
           P FA    E +YE+L LQL+S+  V +MRHYEVV+LIHEK+AEEV SVNEKV  F+REK+
Sbjct: 105 PEFADAEEENVYEFLKLQLQSDLNVERMRHYEVVYLIHEKHAEEVGSVNEKVQDFLREKR 164

Query: 177 GKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRD 236
           GKIWR+SDWGMRRLAYKI+KA  AHYILMNFE+EAKWIN+FKSMLD DERVIRHLVIKRD
Sbjct: 165 GKIWRMSDWGMRRLAYKIQKAKNAHYILMNFEIEAKWINDFKSMLDKDERVIRHLVIKRD 224

Query: 237 AAITEDCPPPPEFHTLRAG-DDYSEEEEEEDMDD-YDSED-ELDWDGEDELDDYGDDIED 296
            AITEDCPPPPEFHTLR+G DD  ++EEE+D DD YD ED + D DG+ +LD Y D  ED
Sbjct: 225 EAITEDCPPPPEFHTLRSGMDDDDDDEEEDDYDDEYDIEDWDEDEDGDGDLDGYEDGTED 284

Query: 297 GIIIVDGDDDDDDSGSKAIKSSAGSRDLR 319
             II+  ++D+D + +    S  G R LR
Sbjct: 285 DSIILKSEEDEDKNNNITKLSKTGDRKLR 313

The following BLAST results are available for this feature:
BLAST of CmoCh17G003730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS6_ALCBS1.0e-1945.5430S ribosomal protein S6 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11... [more]
RS6_CHRVO5.0e-1944.5530S ribosomal protein S6 OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 3... [more]
RS6_THICR6.6e-1943.3630S ribosomal protein S6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rpsF PE=3... [more]
RS6_LARHH8.6e-1943.5630S ribosomal protein S6 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsF PE=3... [more]
RS6_ALKEH1.5e-1844.5530S ribosomal protein S6 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DS... [more]
BLAST of CmoCh17G003730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD50_CUCSA1.9e-8172.77Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324870 PE=3 SV=1[more]
D7SYH9_VITVI1.3e-6166.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00590 PE=3 SV=... [more]
A0A067K6R2_JATCU1.8e-6064.35Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19040 PE=3 SV=1[more]
A0A061EP44_THECC7.0e-6060.26Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobr... [more]
M1BB45_SOLTU2.7e-5967.69Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015968 PE=3 SV=1[more]
BLAST of CmoCh17G003730 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17170.14.2e-5655.25 Translation elongation factor EF1B/ribosomal protein S6 family prot... [more]
BLAST of CmoCh17G003730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116919|ref|XP_008458328.1|1.2e-8171.67PREDICTED: uncharacterized protein LOC103497776 [Cucumis melo][more]
gi|449462132|ref|XP_004148795.1|2.7e-8172.77PREDICTED: probable dual specificity protein phosphatase DDB_G0281963 [Cucumis s... [more]
gi|225432037|ref|XP_002273724.1|1.8e-6166.35PREDICTED: uncharacterized protein LOC100243195 [Vitis vinifera][more]
gi|802705666|ref|XP_012084128.1|2.6e-6064.35PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas][more]
gi|1009172469|ref|XP_015867288.1|2.6e-6066.03PREDICTED: protein SET-like [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000529Ribosomal_S6
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR020814Ribosomal_S6_plastid/chlpt
IPR020815Ribosomal_S6_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0019843rRNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0070181 small ribosomal subunit rRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G003730.1CmoCh17G003730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000529Ribosomal protein S6PFAMPF01250Ribosomal_S6coord: 142..230
score: 1.2
IPR000529Ribosomal protein S6TIGRFAMsTIGR00166TIGR00166coord: 140..232
score: 1.2
IPR000529Ribosomal protein S6unknownSSF54995Ribosomal protein S6coord: 140..240
score: 7.72
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3DG3DSA:3.30.70.60coord: 140..240
score: 3.4
IPR020814Ribosomal protein S6, plastid/chloroplastHAMAPMF_00360Ribosomal_S6coord: 140..233
score: 19
IPR020815Ribosomal protein S6, conserved sitePROSITEPS01048RIBOSOMAL_S6coord: 182..191
scor
NoneNo IPR availablePANTHERPTHR21011MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6coord: 121..273
score: 9.9
NoneNo IPR availablePANTHERPTHR21011:SF4SUBFAMILY NOT NAMEDcoord: 121..273
score: 9.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G003730Cucsa.246970Cucumber (Gy14) v1cgycmoB0688
CmoCh17G003730CmaCh17G003840Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G003730Cla009228Watermelon (97103) v1cmowmB353
CmoCh17G003730Csa6G324870Cucumber (Chinese Long) v2cmocuB370
CmoCh17G003730MELO3C021255Melon (DHL92) v3.5.1cmomeB306
CmoCh17G003730ClCG06G004410Watermelon (Charleston Gray)cmowcgB325
CmoCh17G003730CSPI06G17650Wild cucumber (PI 183967)cmocpiB373
CmoCh17G003730Lsi09G015090Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G003730Cp4.1LG12g03410Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G003730MELO3C021255.2Melon (DHL92) v3.6.1cmomedB351
CmoCh17G003730CsaV3_UNG230110Cucumber (Chinese Long) v3cmocucB0412
CmoCh17G003730CsaV3_6G028440Cucumber (Chinese Long) v3cmocucB0445
CmoCh17G003730Cla97C06G113840Watermelon (97103) v2cmowmbB361
CmoCh17G003730Bhi12G001744Wax gourdcmowgoB0454
CmoCh17G003730CsGy6G017220Cucumber (Gy14) v2cgybcmoB745
CmoCh17G003730Carg05561Silver-seed gourdcarcmoB0097
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G003730Cucurbita pepo (Zucchini)cmocpeB340
CmoCh17G003730Cucurbita pepo (Zucchini)cmocpeB373
CmoCh17G003730Bottle gourd (USVL1VR-Ls)cmolsiB331
CmoCh17G003730Bottle gourd (USVL1VR-Ls)cmolsiB339
CmoCh17G003730Cucumber (Gy14) v2cgybcmoB317
CmoCh17G003730Melon (DHL92) v3.6.1cmomedB385
CmoCh17G003730Silver-seed gourdcarcmoB0389
CmoCh17G003730Silver-seed gourdcarcmoB0958
CmoCh17G003730Cucumber (Chinese Long) v3cmocucB0420
CmoCh17G003730Watermelon (97103) v2cmowmbB343
CmoCh17G003730Watermelon (97103) v2cmowmbB347
CmoCh17G003730Watermelon (97103) v2cmowmbB351
CmoCh17G003730Wax gourdcmowgoB0451
CmoCh17G003730Wax gourdcmowgoB0472
CmoCh17G003730Cucurbita moschata (Rifu)cmocmoB196
CmoCh17G003730Cucurbita moschata (Rifu)cmocmoB198
CmoCh17G003730Cucurbita moschata (Rifu)cmocmoB307
CmoCh17G003730Cucurbita moschata (Rifu)cmocmoB310
CmoCh17G003730Cucumber (Gy14) v1cgycmoB0178
CmoCh17G003730Cucumber (Gy14) v1cgycmoB0707
CmoCh17G003730Cucurbita maxima (Rimu)cmacmoB812
CmoCh17G003730Cucurbita maxima (Rimu)cmacmoB775
CmoCh17G003730Cucurbita maxima (Rimu)cmacmoB887
CmoCh17G003730Wild cucumber (PI 183967)cmocpiB349
CmoCh17G003730Wild cucumber (PI 183967)cmocpiB352
CmoCh17G003730Cucumber (Chinese Long) v2cmocuB342
CmoCh17G003730Cucumber (Chinese Long) v2cmocuB345
CmoCh17G003730Melon (DHL92) v3.5.1cmomeB335
CmoCh17G003730Watermelon (Charleston Gray)cmowcgB306
CmoCh17G003730Watermelon (Charleston Gray)cmowcgB307
CmoCh17G003730Watermelon (Charleston Gray)cmowcgB312
CmoCh17G003730Watermelon (Charleston Gray)cmowcgB316
CmoCh17G003730Watermelon (97103) v1cmowmB329
CmoCh17G003730Watermelon (97103) v1cmowmB330
CmoCh17G003730Watermelon (97103) v1cmowmB341
CmoCh17G003730Watermelon (97103) v1cmowmB344