Cp4.1LG12g03410 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g03410
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description30S ribosomal S6
LocationCp4.1LG12 : 2219845 .. 2222704 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTCAGTCCATCCCGGCTTCTGCCATTTCCGTACGCCATGGATACTCTTCTTTTCTCCCCTTCTTCTTCTTCAGCTTATCCTTCTCTCAAGGCTCCCTCTCTGTTGCCTCGAAATGGCTTCTGGGGATCACGAACCCTTTTCTCTGATTTTCCCAATGTATGCTCTTCCTTTTGCACTCTCAATCCACCGACTGGATTCGCAAGAAAATCCGTGGTTGTCGCGGCAAAGAAAACCAATTCTAACAAGGACGACGGCCACCGTTCCGTTCCCAAACCTGATGAGACTACCGGCTTCTTCCCTGAAGCTGTTCTGCTTAAGGAGGTGCAGTTTTAATGCTTCTCATTTCTTTTTAATCTTTATATATTTTTATGTGTCTGTCGTCATCTGTTCATTATCTTCAAATTTCGGCGATTCTTTGCTCTTTGAACTATTTCCAACTGGTTTGAATCTATGAGCCGAGAAGCGGAAATTTTAGAAGCCGAGAATTCGTGGAGGTTTGTTTGAATGTCATTCTCTTCGATACCTTCTTTGCTTCAAGTGCTTTTTGAAGGTTCTCTGATATGCTACTCGAGGAACTTCTAAGAATCGAGAATTGAAACTCCTAAGCGTAGATATTGGAGGCCAGTACAAAAATTTGATAGGAAGCTGCTCAGACATACTGATGTTTAATCTGCTTATATACTTTGTGAGTCGGAGAAATTTCTTGAGTGGACTTTTGGTTTTGATTCGCAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGGTGATCATTTCTCTTCCATTTTGATCCATTCTTTGGCTTTCCTTTCCTTCTAGAAGATTATGGTGACTATGAACAGGAGATATCAATTTCACTTTTGCCCTAATTTTGCAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAAGTAAGCTTACTTTCTGCTTGTTCTGGTCAAGTATGATTAATACAACACAATGAATAGGGAGTTGATGTTTTTATCATTAACACAGGAAGAAAAAGGTTGTATTTATTTAGTTTGTGTAATTTTTGTTGCCCAACTATTGTCTAAAGAAGGCAATAGTTTCATCCTGTATTTGTTTATATTTGAAGTGGTGTATTTCCTTTCTTGTCACTGCAGTGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTAAGGCAACTATCTTGACAATTTGGCTCTCTTATGCGACTTTGTGCTGCCTGCAAGGCTGTTTTCTCTAAATGGTATTGTAGCGAACATGTAATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAAAACCCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACTTTGAGGGTAAGCTCGAAAGGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTAGGTTTGGGCTGTTACATGTAAATTCCATGTCTTGTGCAAGTCATAACTTTTGACCATCAGGCTCAGCAACTCAAGGCCAGCTTATTGATCCGAGTTGCATCAATGTTTCTTTGGAGTTGTGTTGAATTTTCCTTCAGTTTCTGATTAAAATAAAAATGCTGTTGCAGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGAGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATTCCCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAAAATAATTGGATAGTTTCAATTTGGCAGTAGAAGTTGAGGTGAGTTTCATGTAATGAGGTTTGTTTTAGCTGCGTTAGATTTTGTCCTTATCACGTAATGGCACATGATTGATACCATCTGCATTCGCTTCGGAGTGGGCCATGAAGGCATTGAGCTAATTCTACAATTCTGTGATGGAGTTTTGCTTCACTTCAGGTATTAAGTTATTGAAACTGCCATTATTTTCCCTGAATTATATGCCCTTCACCAGTTAAAATACTTGTAGGTTTTAGGTCATGTCAACAAACCACACGTGACTCGATGTCGAATTATCTTCATCGCAACTGTTTCTCCATGGGAACCAAGTTATTAAATGTAATTCATCTTTCATGTCGATTTCAAACTTATGAATATCTGAAAATGTCAACATGTTGGCGAAAATTTAAAATCCTATTAGAAACATTATGATGCGTCTGTTTTTCGGTTGGGTTTGTAGAGCTAGACTAATGATTAATCTCATACCAATTTGTTGAGGCATTAGCAATTTAAGTGGAAAAATATGGTTGGAAGTAAATGATATGCACAATTAGTTACAATTTTCAGGCTGAGTTGAGCTTCCAAAGTTGGATGTGTTTGTAAGATGGATCATAGCTATCTAATTTCAAATTTCTAATACTCTGCCCGATTGGAAACTTTACCTATTCATTATTGACCCAATTTTAGACATATTGGGATTGTT

mRNA sequence

CGTTTCAGTCCATCCCGGCTTCTGCCATTTCCGTACGCCATGGATACTCTTCTTTTCTCCCCTTCTTCTTCTTCAGCTTATCCTTCTCTCAAGGCTCCCTCTCTGTTGCCTCGAAATGGCTTCTGGGGATCACGAACCCTTTTCTCTGATTTTCCCAATGTATGCTCTTCCTTTTGCACTCTCAATCCACCGACTGGATTCGCAAGAAAATCCGTGGTTGTCGCGGCAAAGAAAACCAATTCTAACAAGGACGACGGCCACCGTTCCGTTCCCAAACCTGATGAGACTACCGGCTTCTTCCCTGAAGCTGTTCTGCTTAAGGAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAATGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGAGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATTCCCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAAAATAATTGGATAGTTTCAATTTGGCAGTAGAAGTTGAGGTGAGTTTCATGTAATGAGGTTTGTTTTAGCTGCGTTAGATTTTGTCCTTATCACGTAATGGCACATGATTGATACCATCTGCATTCGCTTCGGAGTGGGCCATGAAGGCATTGAGCTAATTCTACAATTCTGTGATGGAGTTTTGCTTCACTTCAGGTATTAAGTTATTGAAACTGCCATTATTTTCCCTGAATTATATGCCCTTCACCAGTTAAAATACTTGTAGGTTTTAGGTCATGTCAACAAACCACACGTGACTCGATGTCGAATTATCTTCATCGCAACTGTTTCTCCATGGGAACCAAGTTATTAAATGTAATTCATCTTTCATGTCGATTTCAAACTTATGAATATCTGAAAATGTCAACATGTTGGCGAAAATTTAAAATCCTATTAGAAACATTATGATGCGTCTGTTTTTCGGTTGGGTTTGTAGAGCTAGACTAATGATTAATCTCATACCAATTTGTTGAGGCATTAGCAATTTAAGTGGAAAAATATGGTTGGAAGTAAATGATATGCACAATTAGTTACAATTTTCAGGCTGAGTTGAGCTTCCAAAGTTGGATGTGTTTGTAAGATGGATCATAGCTATCTAATTTCAAATTTCTAATACTCTGCCCGATTGGAAACTTTACCTATTCATTATTGACCCAATTTTAGACATATTGGGATTGTT

Coding sequence (CDS)

ATGGATACTCTTCTTTTCTCCCCTTCTTCTTCTTCAGCTTATCCTTCTCTCAAGGCTCCCTCTCTGTTGCCTCGAAATGGCTTCTGGGGATCACGAACCCTTTTCTCTGATTTTCCCAATGTATGCTCTTCCTTTTGCACTCTCAATCCACCGACTGGATTCGCAAGAAAATCCGTGGTTGTCGCGGCAAAGAAAACCAATTCTAACAAGGACGACGGCCACCGTTCCGTTCCCAAACCTGATGAGACTACCGGCTTCTTCCCTGAAGCTGTTCTGCTTAAGGAGAAAAGAGTTGCTGAAGATGGTCAATTTCTCCCCGAATTTGCTGATGCGGAAGAAGAAAAGCTTTATGAATATTTGAACCTTCAGTTGGAAAGTGAATCGAAAGTTCTACAAATGCGTCACTATGAGGTAGTCTTCTTAATTCACGAGAAGAACGCAGAAGAGGTTGAGAGTGTAAATGAGAAAGTTCAAGGTTTTATAAGGGAGAAGAAAGGGAAGATATGGAGACTGAGTGACTGGGGAATGCGAAGGCTGGCATACAAGATAAAGAAAGCCAATTATGCACATTACATATTGATGAATTTTGAACTGGAGGCCAAATGGATTAATGAATTTAAGAGCATGTTAGATATGGATGAAAGAGTAATTCGACATCTTGTGATTAAGAGGGATGCTGCTATCACCGAAGATTGCCCTCCACCTCCCGAGTTTCATTCCCTTCGTGCAGGAGATGACTACAGTGAAGAAGAAGAGGAAGAGGACATGGATGATTATGATAGTGAGGATGAACTGGATTGGGATGGTGAAGATGAGTTGGATGATTATGGTGATGATATTGAAGATGGGATTATTATTGTTGACGGTGACGACGACGACGACGACGACGACGACGACGACGACAGCGGAAGTAAGGCCATCAAATCTTCTGCAGGCAGCAGAGACTTGAGAAATAGAACTAAAAAATAA

Protein sequence

MDTLLFSPSSSSAYPSLKAPSLLPRNGFWGSRTLFSDFPNVCSSFCTLNPPTGFARKSVVVAAKKTNSNKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHSLRAGDDYSEEEEEEDMDDYDSEDELDWDGEDELDDYGDDIEDGIIIVDGDDDDDDDDDDDDSGSKAIKSSAGSRDLRNRTKK
Homology
[Close]
BLAST of Cp4.1LG12g03410 vs. Swiss-Prot
Match: RS6_ALCBS (30S ribosomal protein S6 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) GN=rpsF PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.8e-20
Identity = 46/101 (45.54%), Postives = 68/101 (67.33%), Query Frame = 1 

Query: 133 MRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 192
           MRHYEVVFL+H   +E+V ++ E+    + + KG I R+ DWG R+LAY I K + AHY+
Sbjct: 1   MRHYEVVFLVHPDQSEQVSAMVERYSAIVTDGKGTIHRVEDWGRRQLAYPINKIHKAHYV 60

Query: 193 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 234
           ++N E + + + E ++    ++ VIRHLVI+RD AITE  P
Sbjct: 61  MLNIECDGETLGELENTFRFNDAVIRHLVIRRDNAITEPSP 101

[Close]
BLAST of Cp4.1LG12g03410 vs. Swiss-Prot
Match: RS6_CHRVO (30S ribosomal protein S6 OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=rpsF PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.9e-19
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = 1 

Query: 133 MRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 192
           MRHYE+VF++H   +E+V ++ E+ +G +   +GKI RL DWG R+LAY I+K + AHY+
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGMVLAAEGKIHRLEDWGRRQLAYPIQKLHKAHYV 60

Query: 193 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 234
           LMN E +A+ + E +     ++ V+RHL IK D AI++  P
Sbjct: 61  LMNVECQAETLAEIEHAFKFNDAVLRHLTIKMDRAISDASP 101

[Close]
BLAST of Cp4.1LG12g03410 vs. Swiss-Prot
Match: RS6_THICR (30S ribosomal protein S6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rpsF PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-19
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1 

Query: 133 MRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 192
           MRHYEVVFL+H   +E+V ++ E+ +G I E  G I RL DWG R+LAY I K + AHYI
Sbjct: 1   MRHYEVVFLVHPDQSEQVPAMIERYRGLIEENGGAIHRLEDWGRRQLAYLINKVHKAHYI 60

Query: 193 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHSLRAGD 246
           LMN E + + + E +++   ++ V+R + IKR+ A+TE      +    R GD
Sbjct: 61  LMNIECDQETLKELENLFYYNDAVLRDMFIKRNEAVTEPSVMASQKEDKRRGD 113

[Close]
BLAST of Cp4.1LG12g03410 vs. Swiss-Prot
Match: RS6_LARHH (30S ribosomal protein S6 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsF PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.0e-19
Identity = 44/101 (43.56%), Postives = 67/101 (66.34%), Query Frame = 1 

Query: 133 MRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 192
           MRHYE+VF++H   +E+V ++ E+ +G +  + GKI RL DWG R+LAY I+K + AHY+
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMVERYKGMVLGQNGKIHRLEDWGRRQLAYPIQKIHKAHYV 60

Query: 193 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 234
           +MN E   + + E +     ++ V+RHL IK D A+TE  P
Sbjct: 61  MMNIECGKETLEEIEHAFKFNDAVLRHLTIKMDRAVTEASP 101

[Close]
BLAST of Cp4.1LG12g03410 vs. Swiss-Prot
Match: RS6_COXBR (30S ribosomal protein S6 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpsF PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.6e-19
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 1 

Query: 133 MRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLAYKIKKANYAHYI 192
           MRHYE+V L+H   + +V ++ E+ Q  I+EK GK+ RL DWG R+LAY I K + AHY+
Sbjct: 1   MRHYEIVILVHPDQSSQVPAMVERYQSMIKEKDGKVHRLEDWGRRQLAYSIDKVHKAHYL 60

Query: 193 LMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITE 231
           LMN E +   I+E ++    ++ VIR L++KRD AIT+
Sbjct: 61  LMNIESDQGVISELENAFRYNDAVIRSLILKRDHAITK 98

[Close]
BLAST of Cp4.1LG12g03410 vs. TrEMBL
Match: A0A0A0KD50_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324870 PE=3 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.7e-122
Identity = 250/326 (76.69%), Postives = 283/326 (86.81%), Query Frame = 1 

Query: 1   MDTL-LFSPSSSSAYPSLKAPSL-LPRNGFWGSRTLFSDFPNVCSSFCTLNPPTGFARKS 60
           MDTL LFSPSSSS + SLK+P+L L RNG   SR+ FSDFPNVCSSF TLN  T F+RKS
Sbjct: 1   MDTLTLFSPSSSSFHSSLKSPNLFLLRNG---SRS-FSDFPNVCSSFPTLNLSTPFSRKS 60

Query: 61  VVVAAKKTNS--NKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKL 120
           +++AAKK N+  NKDD HRS+PKPDE+ GFFPEAVLLKEK+VAEDGQFLPEFADAEEEKL
Sbjct: 61  IILAAKKPNAQPNKDDAHRSLPKPDESIGFFPEAVLLKEKKVAEDGQFLPEFADAEEEKL 120

Query: 121 YEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGM 180
           YEYLNLQLESESKV QMRHYE+VFLIHEKNAEEVESV EKVQGF+REKKGK+WRLSDWGM
Sbjct: 121 YEYLNLQLESESKVEQMRHYEIVFLIHEKNAEEVESVIEKVQGFLREKKGKLWRLSDWGM 180

Query: 181 RRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPP 240
           RRLAYKIKKA YAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRD AITEDCPPPP
Sbjct: 181 RRLAYKIKKAKYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDTAITEDCPPPP 240

Query: 241 EFHSLRAGDDYSEEEEEEDMDDYDSEDELDWDGEDELDDYGDDIEDGIIIVDGDDDDDDD 300
           EFH+LRAG D  ++ EE+DMDDY+S+DE++WD E ELDDY + ++DGIIIVD     D+D
Sbjct: 241 EFHTLRAGIDDDDDNEEDDMDDYNSDDEMEWDDEAELDDYDEGLDDGIIIVDS----DND 300

Query: 301 DDDDDSGSKAIKSSAGSRDLRNRTKK 323
            DD+   + +  ++AG+R LRNRTKK
Sbjct: 301 TDDNSISTTSKSTAAGNRGLRNRTKK 318

[Close]
BLAST of Cp4.1LG12g03410 vs. TrEMBL
Match: A0A061EP44_THECC (Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobroma cacao GN=TCM_021419 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.0e-83
Identity = 190/304 (62.50%), Postives = 229/304 (75.33%), Query Frame = 1 

Query: 1   MDTLLFSPSSSSAYPSLKAPSLLPRNGFWGSRTLFSDFPNVCSSFCTLNPPTGFARKSVV 60
           M++LL SP+   A P L  P L   +GF+G+++ F   P   S            RK ++
Sbjct: 98  MESLLQSPAKVVA-PRL--PKLKTGSGFFGNQSSFLKLPQENSYLGR--------RKLLI 157

Query: 61  VAAKKTNS--NKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKLYE 120
           V AKK  +  NK D H  +PKPDETTGFFPEAVLLKEK+V EDG+ LPEFAD EE++LYE
Sbjct: 158 VEAKKNKNKDNKQDSHSFIPKPDETTGFFPEAVLLKEKKVQEDGKLLPEFADDEEQELYE 217

Query: 121 YLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRR 180
            LNLQL+S   V +MRHYEVV+LIHEK+AEEV SVNEKVQ F+REK+G++WRL+DWG+RR
Sbjct: 218 SLNLQLQSALNVERMRHYEVVYLIHEKHAEEVGSVNEKVQDFLREKRGRLWRLNDWGLRR 277

Query: 181 LAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEF 240
           LAYKIKKA  AHYILMNFELEA+WINEFK+MLD DERVIRHLVIKRD AITEDCPPPPE+
Sbjct: 278 LAYKIKKAKNAHYILMNFELEARWINEFKTMLDKDERVIRHLVIKRDEAITEDCPPPPEW 337

Query: 241 HSLRA-GDDYSEEEEEEDMDDYDSEDE----LDWDGEDELDDYGDD-IEDGIIIVDGDDD 297
           H+LRA GDDY EEE++ D D Y+ ED+     DWDGED+ D + D+ +EDGII   G DD
Sbjct: 338 HTLRAGGDDYDEEEDDADYDVYEVEDDEDLGEDWDGEDDSDIFEDNGVEDGIIA--GKDD 388

[Close]
BLAST of Cp4.1LG12g03410 vs. TrEMBL
Match: D7SYH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00590 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 2.6e-83
Identity = 185/297 (62.29%), Postives = 216/297 (72.73%), Query Frame = 1 

Query: 1   MDTLLFSPSSSSAYPSLKAPSLLPRNGFWGSRTLFSDFPNVCSSFCTLNPPTGFARKSVV 60
           MD L+ +P  ++     K   L+   G   ++T F  F    SS           RKSVV
Sbjct: 1   MDALVRTPHITTNLTP-KLIRLVGNGGITWNQTPFLTFSKGYSSISANR-----LRKSVV 60

Query: 61  VAAKKTNSNKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKLYEYL 120
             AKK   +  D H  VPKPDE TG FPEAVLLKEK+  EDG FLPEFADAEEE+LYE+L
Sbjct: 61  AEAKKRKKDSVDAHNFVPKPDEATGVFPEAVLLKEKKAQEDGSFLPEFADAEEEELYEFL 120

Query: 121 NLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLA 180
           NLQLES+  V +MRHYEVV+LIHEK+ EEVE+VN KVQ FIREKKGK+WRL+DWG+RRLA
Sbjct: 121 NLQLESDLNVERMRHYEVVYLIHEKHDEEVENVNSKVQDFIREKKGKLWRLNDWGLRRLA 180

Query: 181 YKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHS 240
           YKI+KA  AHYILMNFELEA+WIN+FK+MLD DERVIRHLVIKRD AITEDCPPPPEFH+
Sbjct: 181 YKIQKAKNAHYILMNFELEAQWINDFKTMLDQDERVIRHLVIKRDEAITEDCPPPPEFHT 240

Query: 241 LRAG-DDYSEEEEEEDMDDYDSEDELDWDGEDELD--DYGDDIEDGIIIVDGDDDDD 295
           LRAG DDY +EE     DD D +DE DWDGE E+D   Y DD+ D I+ V+ DD +D
Sbjct: 241 LRAGTDDYDDEE-----DDVDYDDEDDWDGEGEVDSNSYSDDVVDVIVPVNSDDRED 286

[Close]
BLAST of Cp4.1LG12g03410 vs. TrEMBL
Match: A0A067K6R2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19040 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 6.5e-82
Identity = 177/267 (66.29%), Postives = 211/267 (79.03%), Query Frame = 1 

Query: 56  RKSVVVAAKKT-NSNKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEE 115
           RKSV+V AKK  NS K+D H  +PKPDE TG FPEAVLLKEK+V EDG+F+PEFADAEEE
Sbjct: 64  RKSVIVGAKKNRNSKKEDSHSFIPKPDEATGPFPEAVLLKEKKVQEDGKFIPEFADAEEE 123

Query: 116 KLYEYLNLQLESESKVLQ-MRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSD 175
           KLYEYL+L+LESE    + +RHYEVV+LIHEK+AEEV  VNEKV+ F+REKKGKIWRL+D
Sbjct: 124 KLYEYLSLELESELNAEERIRHYEVVYLIHEKHAEEVGKVNEKVEDFLREKKGKIWRLND 183

Query: 176 WGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 235
           WGMRRLAYKIKKA  AHYILMNFE+EAKWIN+FK+MLD DERVIRHLVIKRD AITEDCP
Sbjct: 184 WGMRRLAYKIKKATNAHYILMNFEIEAKWINDFKTMLDKDERVIRHLVIKRDEAITEDCP 243

Query: 236 PPPEFHSLRAGDDYSEEEEEEDMD-DYDSEDELDWDGEDELDDYGDDIEDGIIIVDGDDD 295
           PP EFH+LR G D ++E+++ED D DYD     DWDGE E++ Y DD EDGI +++ +D 
Sbjct: 244 PPLEFHTLRGGMDDNDEDDDEDDDLDYDE----DWDGEGEMEGYDDDTEDGITVINSNDI 303

Query: 296 DDDDDDDDDSGSKAIKSSAGSRDLRNR 320
           DD  DD ++  S  +    G    R +
Sbjct: 304 DDGRDDQNNK-SIPVNDKGGRNQKREK 325

[Close]
BLAST of Cp4.1LG12g03410 vs. TrEMBL
Match: W9RJT9_9ROSA (30S ribosomal protein S6 OS=Morus notabilis GN=L484_005957 PE=3 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 1.2e-80
Identity = 166/243 (68.31%), Postives = 201/243 (82.72%), Query Frame = 1 

Query: 56  RKSVVVAAKKTNSNKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEK 115
           RKSV+V AKK  SNK D H  VPKPDE TG FPEAVLLK+K+V +DG+FLPEFADA+EE 
Sbjct: 43  RKSVIVGAKK-KSNKQDAHSFVPKPDEATGPFPEAVLLKQKKVEKDGEFLPEFADADEEN 102

Query: 116 LYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWG 175
           +Y+ L LQLE++  V  +RHYEVV+LIHEK+A+EVE VN+KVQ F+REK+GKIWRL+DWG
Sbjct: 103 IYQVLKLQLENDLLVESLRHYEVVYLIHEKHADEVEKVNQKVQDFLREKRGKIWRLNDWG 162

Query: 176 MRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPP 235
           MRRLAYKI+KA  AHY LMNFE+EAKWIN+FKSMLD +ERVIRHLV+KRD AITEDCPPP
Sbjct: 163 MRRLAYKIQKAKNAHYFLMNFEIEAKWINDFKSMLDKEERVIRHLVMKRDEAITEDCPPP 222

Query: 236 PEFHSLRAG-DDYSEEEEEEDMDD--YDSEDELDWDGEDELDDYGDDIEDGIIIVDGDDD 295
           PE H+LRAG DD  EEE++ D DD  YD E    WDGE E+D+YG++  DG+I V+ D++
Sbjct: 223 PELHTLRAGMDDDEEEEDDLDYDDEYYDEE----WDGEGEIDEYGNEDGDGVIFVNSDEE 280

[Close]
BLAST of Cp4.1LG12g03410 vs. TAIR10
Match: AT3G17170.1 (AT3G17170.1 Translation elongation factor EF1B/ribosomal protein S6 family protein)

HSP 1 Score: 280.8 bits (717), Expect = 1.1e-75
Identity = 163/280 (58.21%), Postives = 212/280 (75.71%), Query Frame = 1 

Query: 48  LNPPTGFARKS---VVVAAKKTNSNKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQF 107
           LNP  G        +V AAKK  S KDD H    +PDE TG FPE++LLKEK++ E+G  
Sbjct: 32  LNPSLGRRGSKPLPLVAAAKKKKSKKDDNHNFSARPDEATGPFPESILLKEKKIDEEGDL 91

Query: 108 LPEFADAEEEKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREK 167
           LPEFADAEE++LY++L+LQL+S+    +MRHYEVV+LIHEK+AEEVES+N+KVQ +++EK
Sbjct: 92  LPEFADAEEKELYQFLDLQLQSDLNEERMRHYEVVYLIHEKHAEEVESINQKVQDYLKEK 151

Query: 168 KGKIWRLSDWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKR 227
           KGK+WR SDWGMRRLAYKI+KA  AHYILMNFE+EAK++NEFK +LD DERVIRHLV+KR
Sbjct: 152 KGKVWRFSDWGMRRLAYKIQKAENAHYILMNFEIEAKYLNEFKGLLDSDERVIRHLVMKR 211

Query: 228 DAAITEDCPPPPEFHSLRAGDDY----SEEEEEEDMDDYDSEDELDWDG-EDELDDYGDD 287
           D AITEDCPPPPEFHS+RAGD+Y     EEE EED D+ + EDE D D  E E+DD G  
Sbjct: 212 DEAITEDCPPPPEFHSVRAGDEYYDDDEEEEIEEDEDEGEGEDEEDADNIEYEVDDDG-- 271

Query: 288 IEDGIIIVDGDDDDDDDDDDDDSGSK--AIKSSAGSRDLR 318
             + ++++ GD+++ ++++D  S  +    KS+ G R+ R
Sbjct: 272 --NVVMVLYGDEEEGEEEEDGASEQEEGQDKSTNGRRETR 307

[Close]
BLAST of Cp4.1LG12g03410 vs. NCBI nr
Match: gi|449462132|ref|XP_004148795.1| (PREDICTED: probable dual specificity protein phosphatase DDB_G0281963 [Cucumis sativus])

HSP 1 Score: 447.2 bits (1149), Expect = 2.4e-122
Identity = 250/326 (76.69%), Postives = 283/326 (86.81%), Query Frame = 1 

Query: 1   MDTL-LFSPSSSSAYPSLKAPSL-LPRNGFWGSRTLFSDFPNVCSSFCTLNPPTGFARKS 60
           MDTL LFSPSSSS + SLK+P+L L RNG   SR+ FSDFPNVCSSF TLN  T F+RKS
Sbjct: 1   MDTLTLFSPSSSSFHSSLKSPNLFLLRNG---SRS-FSDFPNVCSSFPTLNLSTPFSRKS 60

Query: 61  VVVAAKKTNS--NKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKL 120
           +++AAKK N+  NKDD HRS+PKPDE+ GFFPEAVLLKEK+VAEDGQFLPEFADAEEEKL
Sbjct: 61  IILAAKKPNAQPNKDDAHRSLPKPDESIGFFPEAVLLKEKKVAEDGQFLPEFADAEEEKL 120

Query: 121 YEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGM 180
           YEYLNLQLESESKV QMRHYE+VFLIHEKNAEEVESV EKVQGF+REKKGK+WRLSDWGM
Sbjct: 121 YEYLNLQLESESKVEQMRHYEIVFLIHEKNAEEVESVIEKVQGFLREKKGKLWRLSDWGM 180

Query: 181 RRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPP 240
           RRLAYKIKKA YAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRD AITEDCPPPP
Sbjct: 181 RRLAYKIKKAKYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDTAITEDCPPPP 240

Query: 241 EFHSLRAGDDYSEEEEEEDMDDYDSEDELDWDGEDELDDYGDDIEDGIIIVDGDDDDDDD 300
           EFH+LRAG D  ++ EE+DMDDY+S+DE++WD E ELDDY + ++DGIIIVD     D+D
Sbjct: 241 EFHTLRAGIDDDDDNEEDDMDDYNSDDEMEWDDEAELDDYDEGLDDGIIIVDS----DND 300

Query: 301 DDDDDSGSKAIKSSAGSRDLRNRTKK 323
            DD+   + +  ++AG+R LRNRTKK
Sbjct: 301 TDDNSISTTSKSTAAGNRGLRNRTKK 318

[Close]
BLAST of Cp4.1LG12g03410 vs. NCBI nr
Match: gi|659116919|ref|XP_008458328.1| (PREDICTED: uncharacterized protein LOC103497776 [Cucumis melo])

HSP 1 Score: 443.4 bits (1139), Expect = 3.5e-121
Identity = 253/331 (76.44%), Postives = 278/331 (83.99%), Query Frame = 1 

Query: 1   MDTL-LFSPSSSSA-YPSLKAPSLLPRNGFW----GSRTLFSDFPNVCSSFCTLNPPTGF 60
           MD L LFSPSSSS+ + S    SL   N  +    GSR+ FSDFPNVCSSF TLN PT F
Sbjct: 1   MDALTLFSPSSSSSSFSSSIHSSLKSHNNLFLLRNGSRS-FSDFPNVCSSFPTLNLPTRF 60

Query: 61  ARKSVVVAAKKTNS--NKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAE 120
           +RKS+++AAKKTN+  NKDDGHRS+PKPDE+ GFFPEAVLLKEK+VAEDGQFLPEFADAE
Sbjct: 61  SRKSIILAAKKTNAKPNKDDGHRSLPKPDESIGFFPEAVLLKEKKVAEDGQFLPEFADAE 120

Query: 121 EEKLYEYLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLS 180
           EEKLYEYLNLQLESESKV QMRHYEVVFLIHEKNAEEVESV EKVQGF+REKKGK+WRLS
Sbjct: 121 EEKLYEYLNLQLESESKVEQMRHYEVVFLIHEKNAEEVESVIEKVQGFLREKKGKVWRLS 180

Query: 181 DWGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDC 240
           DWGMRRLAYKIKKA YAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRD AITEDC
Sbjct: 181 DWGMRRLAYKIKKAKYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDTAITEDC 240

Query: 241 PPPPEFHSLRAGDDYSEEEEEEDMDDYDSEDELDWDGEDELDDYGDDIEDGIIIVDGDDD 300
           PPPPEFH+LRAG D  ++ EE+DMDDY+S DE+DWD EDELDDY D  +DGIIIV     
Sbjct: 241 PPPPEFHTLRAGVDDDDDNEEDDMDDYNSADEMDWDDEDELDDYDDGFDDGIIIV----- 300

Query: 301 DDDDDDDDDSGSKAIKSSA-GSRDLRNRTKK 323
             D D+DD S S   KS+A G+  LRN+TKK
Sbjct: 301 --DSDNDDTSKSTTSKSTATGNIGLRNKTKK 323

[Close]
BLAST of Cp4.1LG12g03410 vs. NCBI nr
Match: gi|590662152|ref|XP_007035869.1| (Translation elongation factor EF1B/ribosomal protein S6 family protein [Theobroma cacao])

HSP 1 Score: 317.4 bits (812), Expect = 2.9e-83
Identity = 190/304 (62.50%), Postives = 229/304 (75.33%), Query Frame = 1 

Query: 1   MDTLLFSPSSSSAYPSLKAPSLLPRNGFWGSRTLFSDFPNVCSSFCTLNPPTGFARKSVV 60
           M++LL SP+   A P L  P L   +GF+G+++ F   P   S            RK ++
Sbjct: 98  MESLLQSPAKVVA-PRL--PKLKTGSGFFGNQSSFLKLPQENSYLGR--------RKLLI 157

Query: 61  VAAKKTNS--NKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKLYE 120
           V AKK  +  NK D H  +PKPDETTGFFPEAVLLKEK+V EDG+ LPEFAD EE++LYE
Sbjct: 158 VEAKKNKNKDNKQDSHSFIPKPDETTGFFPEAVLLKEKKVQEDGKLLPEFADDEEQELYE 217

Query: 121 YLNLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRR 180
            LNLQL+S   V +MRHYEVV+LIHEK+AEEV SVNEKVQ F+REK+G++WRL+DWG+RR
Sbjct: 218 SLNLQLQSALNVERMRHYEVVYLIHEKHAEEVGSVNEKVQDFLREKRGRLWRLNDWGLRR 277

Query: 181 LAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEF 240
           LAYKIKKA  AHYILMNFELEA+WINEFK+MLD DERVIRHLVIKRD AITEDCPPPPE+
Sbjct: 278 LAYKIKKAKNAHYILMNFELEARWINEFKTMLDKDERVIRHLVIKRDEAITEDCPPPPEW 337

Query: 241 HSLRA-GDDYSEEEEEEDMDDYDSEDE----LDWDGEDELDDYGDD-IEDGIIIVDGDDD 297
           H+LRA GDDY EEE++ D D Y+ ED+     DWDGED+ D + D+ +EDGII   G DD
Sbjct: 338 HTLRAGGDDYDEEEDDADYDVYEVEDDEDLGEDWDGEDDSDIFEDNGVEDGIIA--GKDD 388

[Close]
BLAST of Cp4.1LG12g03410 vs. NCBI nr
Match: gi|225432037|ref|XP_002273724.1| (PREDICTED: uncharacterized protein LOC100243195 [Vitis vinifera])

HSP 1 Score: 317.0 bits (811), Expect = 3.8e-83
Identity = 185/297 (62.29%), Postives = 216/297 (72.73%), Query Frame = 1 

Query: 1   MDTLLFSPSSSSAYPSLKAPSLLPRNGFWGSRTLFSDFPNVCSSFCTLNPPTGFARKSVV 60
           MD L+ +P  ++     K   L+   G   ++T F  F    SS           RKSVV
Sbjct: 1   MDALVRTPHITTNLTP-KLIRLVGNGGITWNQTPFLTFSKGYSSISANR-----LRKSVV 60

Query: 61  VAAKKTNSNKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEEKLYEYL 120
             AKK   +  D H  VPKPDE TG FPEAVLLKEK+  EDG FLPEFADAEEE+LYE+L
Sbjct: 61  AEAKKRKKDSVDAHNFVPKPDEATGVFPEAVLLKEKKAQEDGSFLPEFADAEEEELYEFL 120

Query: 121 NLQLESESKVLQMRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSDWGMRRLA 180
           NLQLES+  V +MRHYEVV+LIHEK+ EEVE+VN KVQ FIREKKGK+WRL+DWG+RRLA
Sbjct: 121 NLQLESDLNVERMRHYEVVYLIHEKHDEEVENVNSKVQDFIREKKGKLWRLNDWGLRRLA 180

Query: 181 YKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCPPPPEFHS 240
           YKI+KA  AHYILMNFELEA+WIN+FK+MLD DERVIRHLVIKRD AITEDCPPPPEFH+
Sbjct: 181 YKIQKAKNAHYILMNFELEAQWINDFKTMLDQDERVIRHLVIKRDEAITEDCPPPPEFHT 240

Query: 241 LRAG-DDYSEEEEEEDMDDYDSEDELDWDGEDELD--DYGDDIEDGIIIVDGDDDDD 295
           LRAG DDY +EE     DD D +DE DWDGE E+D   Y DD+ D I+ V+ DD +D
Sbjct: 241 LRAGTDDYDDEE-----DDVDYDDEDDWDGEGEVDSNSYSDDVVDVIVPVNSDDRED 286

[Close]
BLAST of Cp4.1LG12g03410 vs. NCBI nr
Match: gi|802705666|ref|XP_012084128.1| (PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas])

HSP 1 Score: 312.4 bits (799), Expect = 9.3e-82
Identity = 177/267 (66.29%), Postives = 211/267 (79.03%), Query Frame = 1 

Query: 56  RKSVVVAAKKT-NSNKDDGHRSVPKPDETTGFFPEAVLLKEKRVAEDGQFLPEFADAEEE 115
           RKSV+V AKK  NS K+D H  +PKPDE TG FPEAVLLKEK+V EDG+F+PEFADAEEE
Sbjct: 64  RKSVIVGAKKNRNSKKEDSHSFIPKPDEATGPFPEAVLLKEKKVQEDGKFIPEFADAEEE 123

Query: 116 KLYEYLNLQLESESKVLQ-MRHYEVVFLIHEKNAEEVESVNEKVQGFIREKKGKIWRLSD 175
           KLYEYL+L+LESE    + +RHYEVV+LIHEK+AEEV  VNEKV+ F+REKKGKIWRL+D
Sbjct: 124 KLYEYLSLELESELNAEERIRHYEVVYLIHEKHAEEVGKVNEKVEDFLREKKGKIWRLND 183

Query: 176 WGMRRLAYKIKKANYAHYILMNFELEAKWINEFKSMLDMDERVIRHLVIKRDAAITEDCP 235
           WGMRRLAYKIKKA  AHYILMNFE+EAKWIN+FK+MLD DERVIRHLVIKRD AITEDCP
Sbjct: 184 WGMRRLAYKIKKATNAHYILMNFEIEAKWINDFKTMLDKDERVIRHLVIKRDEAITEDCP 243

Query: 236 PPPEFHSLRAGDDYSEEEEEEDMD-DYDSEDELDWDGEDELDDYGDDIEDGIIIVDGDDD 295
           PP EFH+LR G D ++E+++ED D DYD     DWDGE E++ Y DD EDGI +++ +D 
Sbjct: 244 PPLEFHTLRGGMDDNDEDDDEDDDLDYDE----DWDGEGEMEGYDDDTEDGITVINSNDI 303

Query: 296 DDDDDDDDDSGSKAIKSSAGSRDLRNR 320
           DD  DD ++  S  +    G    R +
Sbjct: 304 DDGRDDQNNK-SIPVNDKGGRNQKREK 325

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g03410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS6_ALCBS7.8e-2045.5430S ribosomal protein S6 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11... [more]
RS6_CHRVO2.9e-1944.5530S ribosomal protein S6 OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 3... [more]
RS6_THICR5.0e-1943.3630S ribosomal protein S6 OS=Thiomicrospira crunogena (strain XCL-2) GN=rpsF PE=3... [more]
RS6_LARHH5.0e-1943.5630S ribosomal protein S6 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsF PE=3... [more]
RS6_COXBR8.6e-1946.9430S ribosomal protein S6 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) G... [more]
BLAST of Cp4.1LG12g03410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD50_CUCSA1.7e-12276.69Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324870 PE=3 SV=1[more]
A0A061EP44_THECC2.0e-8362.50Translation elongation factor EF1B/ribosomal protein S6 family protein OS=Theobr... [more]
D7SYH9_VITVI2.6e-8362.29Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g00590 PE=3 SV=... [more]
A0A067K6R2_JATCU6.5e-8266.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19040 PE=3 SV=1[more]
W9RJT9_9ROSA1.2e-8068.3130S ribosomal protein S6 OS=Morus notabilis GN=L484_005957 PE=3 SV=1[more]
BLAST of Cp4.1LG12g03410 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G17170.11.1e-7558.21 Translation elongation factor EF1B/ribosomal protein S6 family prot... [more]
BLAST of Cp4.1LG12g03410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449462132|ref|XP_004148795.1|2.4e-12276.69PREDICTED: probable dual specificity protein phosphatase DDB_G0281963 [Cucumis s... [more]
gi|659116919|ref|XP_008458328.1|3.5e-12176.44PREDICTED: uncharacterized protein LOC103497776 [Cucumis melo][more]
gi|590662152|ref|XP_007035869.1|2.9e-8362.50Translation elongation factor EF1B/ribosomal protein S6 family protein [Theobrom... [more]
gi|225432037|ref|XP_002273724.1|3.8e-8362.29PREDICTED: uncharacterized protein LOC100243195 [Vitis vinifera][more]
gi|802705666|ref|XP_012084128.1|9.3e-8266.29PREDICTED: uncharacterized protein LOC105643577 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0019843rRNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020815Ribosomal_S6_CS
IPR020814Ribosomal_S6_plastid/chlpt
IPR014717Transl_elong_EF1B/ribosomal_S6
IPR000529Ribosomal_S6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006414 translational elongation
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0070181 small ribosomal subunit rRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g03410.1Cp4.1LG12g03410.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000529Ribosomal protein S6PFAMPF01250Ribosomal_S6coord: 135..223
score: 7.2
IPR000529Ribosomal protein S6TIGRFAMsTIGR00166TIGR00166coord: 133..225
score: 9.7
IPR000529Ribosomal protein S6unknownSSF54995Ribosomal protein S6coord: 133..233
score: 5.76
IPR014717Translation elongation factor EF1B/ribosomal protein S6GENE3DG3DSA:3.30.70.60coord: 133..233
score: 1.8
IPR020814Ribosomal protein S6, plastid/chloroplastHAMAPMF_00360Ribosomal_S6coord: 133..226
score: 19
IPR020815Ribosomal protein S6, conserved sitePROSITEPS01048RIBOSOMAL_S6coord: 175..184
scor
NoneNo IPR availablePANTHERPTHR21011MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6coord: 55..266
score: 1.2E
NoneNo IPR availablePANTHERPTHR21011:SF4SUBFAMILY NOT NAMEDcoord: 55..266
score: 1.2E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g03410Cucsa.246970Cucumber (Gy14) v1cgycpeB0655
Cp4.1LG12g03410CmaCh17G003840Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g03410CmoCh17G003730Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g03410Cla009228Watermelon (97103) v1cpewmB161
Cp4.1LG12g03410Csa6G324870Cucumber (Chinese Long) v2cpecuB154
Cp4.1LG12g03410MELO3C021255Melon (DHL92) v3.5.1cpemeB112
Cp4.1LG12g03410ClCG06G004410Watermelon (Charleston Gray)cpewcgB144
Cp4.1LG12g03410CSPI06G17650Wild cucumber (PI 183967)cpecpiB156
Cp4.1LG12g03410Lsi09G015090Bottle gourd (USVL1VR-Ls)cpelsiB101
Cp4.1LG12g03410MELO3C021255.2Melon (DHL92) v3.6.1cpemedB138
Cp4.1LG12g03410CsaV3_6G028440Cucumber (Chinese Long) v3cpecucB0178
Cp4.1LG12g03410Bhi12G001744Wax gourdcpewgoB0173
Cp4.1LG12g03410CsGy6G017220Cucumber (Gy14) v2cgybcpeB733
Cp4.1LG12g03410Carg05561Silver-seed gourdcarcpeB0099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g03410Cucurbita pepo (Zucchini)cpecpeB158
Cp4.1LG12g03410Cucurbita pepo (Zucchini)cpecpeB184
Cp4.1LG12g03410Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG12g03410Cucumber (Gy14) v1cgycpeB0671
Cp4.1LG12g03410Cucurbita maxima (Rimu)cmacpeB258
Cp4.1LG12g03410Cucurbita maxima (Rimu)cmacpeB812
Cp4.1LG12g03410Cucurbita maxima (Rimu)cmacpeB895
Cp4.1LG12g03410Cucurbita moschata (Rifu)cmocpeB222
Cp4.1LG12g03410Cucurbita moschata (Rifu)cmocpeB766
Cp4.1LG12g03410Cucurbita moschata (Rifu)cmocpeB833
Cp4.1LG12g03410Wild cucumber (PI 183967)cpecpiB133
Cp4.1LG12g03410Cucumber (Chinese Long) v2cpecuB132
Cp4.1LG12g03410Bottle gourd (USVL1VR-Ls)cpelsiB115
Cp4.1LG12g03410Watermelon (Charleston Gray)cpewcgB139
Cp4.1LG12g03410Watermelon (Charleston Gray)cpewcgB133
Cp4.1LG12g03410Watermelon (97103) v1cpewmB140
Cp4.1LG12g03410Watermelon (97103) v1cpewmB152
Cp4.1LG12g03410Melon (DHL92) v3.5.1cpemeB140
Cp4.1LG12g03410Cucumber (Gy14) v2cgybcpeB179
Cp4.1LG12g03410Cucumber (Gy14) v2cgybcpeB303
Cp4.1LG12g03410Melon (DHL92) v3.6.1cpemedB170
Cp4.1LG12g03410Silver-seed gourdcarcpeB0393
Cp4.1LG12g03410Silver-seed gourdcarcpeB0984
Cp4.1LG12g03410Cucumber (Chinese Long) v3cpecucB0154
Cp4.1LG12g03410Wax gourdcpewgoB0170
Cp4.1LG12g03410Wax gourdcpewgoB0188