CmoCh17G000790 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G000790
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal protein L37a-2
LocationCmo_Chr17 : 423295 .. 425493 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCGCGCAGGGAAGTGTTGAACATTTATAGGGTTTCTGCTCTCTCCTGCTAATTCGACAAAATGGTAATCCCATTGCCTGCTTCTCATATTTTGGTTTATATGTTTTTATTCATGTTTGTAATTCGAGAATCCCTTGAGATTGTTTTCGTATATTCGTAAGTCGAAATTGATTAGGTATTTCGTAATGACATCTTTTTGACATTTAACGATGTATTTTTGTTGAGCGATCGAGTTATTGTCTCTCTGTTAATTTACCGGGGAATTTGAAGAGATTAGGTTAATGTAAGATTTCATGAACGTGGTTAATGATTTCGATACTTTTCGTGTTTTATCGGTGTTCTGAATAAGAATGCAGTATCGTTGTTTAGATGTTTGTGTCCGGCATTATTGTGATATTCAGGATATGAGATATGAAGCTTCGGCGAGTAGAATATTGTTATTTTTAATGCATACGAACTTAGCTATTTGATATAGAATAGCATTCTTTTGCAAGTTCTGTTTGGAAATCCAACAAGATCAACTCCGTCCTACATTTTGAATTTTTTTTTGGTATAGTTTTACTTTGTAATAAAATTTAAACTAATTGCAATAATCTTTTCAATTCATTTAGTTATTGCTGGTTGTTAGGTAGGGAAGATGAATGAGATAATTATGCTGAGTTTAGAATCTATCTGTAAGACAATTGCTTATTCTCCTTTCGAACCAGATGCCAAAGATTGATTGTTAACTTTGTATAGCTACGCTAAATGCCATAACAAGCATAGCTTAATTGACACAAAGTATGTATTTTTTTACCGAAAGGTCTGAGGTTTAAATTTTCCGCTCACGTTGTACTAAAAAAACATTGGCTAGTTAATCAGGGTGTTGGCCGATGTTTTGAATTTTTTCATTTTGATGTCTTTAACTCTTAATTTGGTACATAAAAGTCTCGCCTTAAAATTCTTTCCATCTTTTTTATCAATTCTTCTTTTTGTTCATGATGGTTGGATGCATGACTCTCCCATCTTTTTATGATGTTGTAGACAAAGAGAACCAAGAAGGCTGGGATCGTTGGCAAGTATGGTATGTGCTACTGTCGTTCTTTGTTCCCAAGATATGATTGAATGGAAAAATTTAGGAAGTGGGAATATGTATAGGATTTAATGACTTAGATAAAAATCTTTATGGAGGAGAATATTCTGATGTTTGCTCTGATAGATATATACTTCTTAACTGGTCTGGAATTTATGTCATTGTTCATCAAGCATTTTTGTTGTCTGCTAGCTGAGAACTTCCCCCATCCCCACTCTCACACCAAAAAAAATGCGAAACTATAAAAAACAACTTTACCCATTGTCTTAAAAACACCTTTAGTTTTTCAAAAGTTTATATGTCACTAAACCTTTCATAACTACCCTTAGAGTAGATTTTAGATGGATATTGGGACCTGGAACAATGTAGCATGACCCTAGAATTGTGTAGCGATTCAAATTTTCTTATTACACCATTTCAGGTTTCAATTTTCGTACTGAAATGCTGAAGGATTTTTACTACTTTCTTGATTGCAGGTACTCGTTATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTAAGTCAGCACAGCAAGTACTTCTGCGAGTTTTGCGGAAAGGTACAACAGCGTTAAAACCTTCTCTATATGACTCTGAGTCCCCTGCTGTTATGATAACTAAAAGCTTATATGAAGCTATGGATATGAAATACTTGAGCAATATTCGTGTATCCTTTCAGTATGCTGTGAAGAGAAAGGCTGTCGGAATATGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCAGGAGGCGCTTACACGTTGAAGTAAGCATATCTGAATCGCTCTCTCAATATTTTTCCCATCATATTCTTCAATGTTTTAATTATGTTTGTGAATGACAGTACTGCTAGTGCCGTCACTGTGAGGAGTACCATTAGAAGGTTGAGGGAGCAGACGGAGAGCTAAATCCAATCCTAAATATATCATTCTATCTATCTATGAGATCGCACGGAGTAATGTTGTTGAGGTTCTCGAGTTGTTTTTAATTTCCATATATTTTTGCCGAATTTGTATCTTCTATCTTCAAACAGAAGTTGAGAAATGAATCAGTTTGTGGAATCTTGATTTGATGATAATGAATGTGGGATATTTGTTTTAAAATTTGAATTTTAGTTTATTAGTA

mRNA sequence

AGCCGCGCAGGGAAGTGTTGAACATTTATAGGGTTTCTGCTCTCTCCTGCTAATTCGACAAAATGACAAAGAGAACCAAGAAGGCTGGGATCGTTGGCAAGTATGGTACTCGTTATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTAAGTCAGCACAGCAAGTACTTCTGCGAGTTTTGCGGAAAGTATGCTGTGAAGAGAAAGGCTGTCGGAATATGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCAGGAGGCGCTTACACGTTGAATACTGCTAGTGCCGTCACTGTGAGGAGTACCATTAGAAGGTTGAGGGAGCAGACGGAGAGCTAAATCCAATCCTAAATATATCATTCTATCTATCTATGAGATCGCACGGAGTAATGTTGTTGAGGTTCTCGAGTTGTTTTTAATTTCCATATATTTTTGCCGAATTTGTATCTTCTATCTTCAAACAGAAGTTGAGAAATGAATCAGTTTGTGGAATCTTGATTTGATGATAATGAATGTGGGATATTTGTTTTAAAATTTGAATTTTAGTTTATTAGTA

Coding sequence (CDS)

ATGACAAAGAGAACCAAGAAGGCTGGGATCGTTGGCAAGTATGGTACTCGTTATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTAAGTCAGCACAGCAAGTACTTCTGCGAGTTTTGCGGAAAGTATGCTGTGAAGAGAAAGGCTGTCGGAATATGGGGTTGCAAAGATTGTGGTAAAGTGAAAGCAGGAGGCGCTTACACGTTGAATACTGCTAGTGCCGTCACTGTGAGGAGTACCATTAGAAGGTTGAGGGAGCAGACGGAGAGCTAA
Homology
[Close]
BLAST of CmoCh17G000790 vs. Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK C
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-45
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]
BLAST of CmoCh17G000790 vs. Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-45
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]
BLAST of CmoCh17G000790 vs. Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]
BLAST of CmoCh17G000790 vs. Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.9e-44
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. TrEMBL
Match: A0A067JYD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. TrEMBL
Match: A0A0V0GVM5_SOLCH (Putative ovule protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. TrEMBL
Match: A0A0B0N803_GOSAR (60S ribosomal L37a OS=Gossypium arboreum GN=F383_10947 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. TrEMBL
Match: M0ZN48_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001690 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. TrEMBL
Match: M5WNW1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]
BLAST of CmoCh17G000790 vs. TAIR10
Match: AT3G10950.1 (AT3G10950.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. TAIR10
Match: AT3G60245.1 (AT3G60245.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-44
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

[Close]
BLAST of CmoCh17G000790 vs. NCBI nr
Match: gi|641866750|gb|KDO85434.1| (hypothetical protein CISIN_1g045338mg [Citrus sinensis])

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 43  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 102

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 103 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 134

[Close]
BLAST of CmoCh17G000790 vs. NCBI nr
Match: gi|595849622|ref|XP_007209764.1| (hypothetical protein PRUPE_ppa013350mg [Prunus persica])

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]
BLAST of CmoCh17G000790 vs. NCBI nr
Match: gi|225427377|ref|XP_002282974.1| (PREDICTED: 60S ribosomal protein L37a [Vitis vinifera])

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. NCBI nr
Match: gi|565482480|ref|XP_006298880.1| (hypothetical protein CARUB_v10015000mg [Capsella rubella])

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]
BLAST of CmoCh17G000790 vs. NCBI nr
Match: gi|702335612|ref|XP_010055398.1| (PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis])

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-44
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1 

Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVG+WGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGVWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

The following BLAST results are available for this feature:
BLAST of CmoCh17G000790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL37A_GOSHI2.0e-4598.9160S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1[more]
RL371_ORYSJ2.6e-4596.7460S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=... [more]
RL372_ORYSJ2.6e-4596.7460S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=... [more]
RL37A_PSEMZ2.2e-4496.7060S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1[more]
R37A1_ARATH4.9e-4494.57Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV... [more]
BLAST of CmoCh17G000790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067JYD1_JATCU2.6e-44100.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1[more]
A0A0V0GVM5_SOLCH2.6e-44100.00Putative ovule protein OS=Solanum chacoense PE=3 SV=1[more]
A0A0B0N803_GOSAR2.6e-44100.0060S ribosomal L37a OS=Gossypium arboreum GN=F383_10947 PE=3 SV=1[more]
M0ZN48_SOLTU2.6e-44100.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001690 PE=3 SV=1[more]
M5WNW1_PRUPE2.6e-44100.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1[more]
BLAST of CmoCh17G000790 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10950.12.8e-4594.57 Zinc-binding ribosomal protein family protein[more]
AT3G60245.11.8e-4493.41 Zinc-binding ribosomal protein family protein[more]
BLAST of CmoCh17G000790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|641866750|gb|KDO85434.1|3.8e-44100.00hypothetical protein CISIN_1g045338mg [Citrus sinensis][more]
gi|595849622|ref|XP_007209764.1|3.8e-44100.00hypothetical protein PRUPE_ppa013350mg [Prunus persica][more]
gi|225427377|ref|XP_002282974.1|3.8e-44100.00PREDICTED: 60S ribosomal protein L37a [Vitis vinifera][more]
gi|565482480|ref|XP_006298880.1|6.4e-4498.91hypothetical protein CARUB_v10015000mg [Capsella rubella][more]
gi|702335612|ref|XP_010055398.1|6.4e-4497.83PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G000790.1CmoCh17G000790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G000790Cucsa.256770Cucumber (Gy14) v1cgycmoB0708
CmoCh17G000790Cucsa.266000Cucumber (Gy14) v1cgycmoB0733
CmoCh17G000790CmaCh14G019210Cucurbita maxima (Rimu)cmacmoB251
CmoCh17G000790CmaCh17G000740Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G000790CmaCh06G011910Cucurbita maxima (Rimu)cmacmoB811
CmoCh17G000790CmaCh08G010080Cucurbita maxima (Rimu)cmacmoB901
CmoCh17G000790Cla010575Watermelon (97103) v1cmowmB353
CmoCh17G000790Cla021388Watermelon (97103) v1cmowmB340
CmoCh17G000790Csa2G120410Cucumber (Chinese Long) v2cmocuB340
CmoCh17G000790Csa3G129540Cucumber (Chinese Long) v2cmocuB348
CmoCh17G000790MELO3C020369Melon (DHL92) v3.5.1cmomeB328
CmoCh17G000790MELO3C006280Melon (DHL92) v3.5.1cmomeB336
CmoCh17G000790ClCG05G002990Watermelon (Charleston Gray)cmowcgB315
CmoCh17G000790ClCG06G008110Watermelon (Charleston Gray)cmowcgB325
CmoCh17G000790CSPI02G08710Wild cucumber (PI 183967)cmocpiB347
CmoCh17G000790CSPI03G10450Wild cucumber (PI 183967)cmocpiB353
CmoCh17G000790Lsi05G018760Bottle gourd (USVL1VR-Ls)cmolsiB345
CmoCh17G000790Lsi09G011070Bottle gourd (USVL1VR-Ls)cmolsiB320
CmoCh17G000790Cp4.1LG17g03080Cucurbita pepo (Zucchini)cmocpeB342
CmoCh17G000790Cp4.1LG03g17780Cucurbita pepo (Zucchini)cmocpeB364
CmoCh17G000790Cp4.1LG08g02450Cucurbita pepo (Zucchini)cmocpeB373
CmoCh17G000790MELO3C020369.2Melon (DHL92) v3.6.1cmomedB377
CmoCh17G000790MELO3C006280.2Melon (DHL92) v3.6.1cmomedB385
CmoCh17G000790CsaV3_3G010610Cucumber (Chinese Long) v3cmocucB0420
CmoCh17G000790CsaV3_2G011060Cucumber (Chinese Long) v3cmocucB0414
CmoCh17G000790Cla97C05G083620Watermelon (97103) v2cmowmbB350
CmoCh17G000790Cla97C06G117830Watermelon (97103) v2cmowmbB361
CmoCh17G000790Bhi01G000131Wax gourdcmowgoB0474
CmoCh17G000790Bhi12G001251Wax gourdcmowgoB0457
CmoCh17G000790CsGy3G010560Cucumber (Gy14) v2cgybcmoB317
CmoCh17G000790CsGy2G008970Cucumber (Gy14) v2cgybcmoB187
CmoCh17G000790Carg06314Silver-seed gourdcarcmoB1285
CmoCh17G000790Carg14902Silver-seed gourdcarcmoB0851
CmoCh17G000790Carg10164Silver-seed gourdcarcmoB0320
CmoCh17G000790Carg11035Silver-seed gourdcarcmoB1445
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh17G000790CmoCh14G019760Cucurbita moschata (Rifu)cmocmoB198
CmoCh17G000790CmoCh06G012290Cucurbita moschata (Rifu)cmocmoB308
CmoCh17G000790CmoCh08G009800Cucurbita moschata (Rifu)cmocmoB324
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G000790Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G000790Silver-seed gourdcarcmoB1448
CmoCh17G000790Cucurbita moschata (Rifu)cmocmoB310
CmoCh17G000790Cucurbita maxima (Rimu)cmacmoB887