MELO3C006280 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C006280
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	60S ribosomal protein L37a-2
Location	chr6 : 2227661 .. 2229718 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCGCTTAGCCGTTCGGTCTCTGCATCAGCGTCTGTCCAGAGGTGCCCTTGTTCCGTCAAAGCCTCAACAATGGTACTCAGCCTCTCTCTCCCGTCTTTGCTGTTCATCTTTACTTCAATTTGTTTTTCTTTTCTCCTTCAAGTTTTGAAGGCGAGGCAAGTTGTCTGTAGTTTGCAGGATTTAATTTCTGGGCGATTAATGAACTGAAATTGGGAACACGAACCTCATTCTTCTGTCGTTATTGGCTGCGTGGTAGTGGATTATCGATTGTATTCCATGGGTATTTCGTGTTCTAGCTGAATTAGATGTAGAAATGTGGTTTCAGCAATTCACGTTCTCCATGTTTCATTAATTTTCCGAACTTCAACATTGTTTTAGATTCAGCAATCATCGTGGGAAAGATAGATTAGAATCTGGAAAATCATTTTGAGCTAGGGTTTACGTTCTATCTTTACTTTATTATACTTACTATGTGAAGACTGTTAGATTTATCTGACGTGTTTTTGTTGCGATTTCTTGTTTGATCGCAGACGAAAAGAACCAAGAAGGCTGGCATTGTCGGCAAATACGGTATGTACTAGCGTGTTATGTTTTTTTGAATTTTTTTAAATATTTAACCTACAGTGAAATAGTATTAGAGCAATGAGTGGAAGTGGGACTTGTGCAAGGGTTTCTTAATTAGTTTGACTCTCAAAGATAATTTGTTGAAGTAGTTGGTAGATTTTTAATTCCCCTATACTTCAACGTGCTTGTATGCGCACGTTATGCTGTGCATTTATGTTTGTAAATGGTTTATTGTGTATTTTGTAACAGGTACCAGATATGGTGCTAGTCTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGCGGAAAGGTTAGTTTCTTTATTCAACATATAGTTTGTTGTATTTGGTGATTACAAGTAGTTCGTCAGTGAATGAAGAAATTATTTGGTTTTGGTGGTTACAAGTAGATCCTTGAATGGATGTTGAACAACGTGTGATACAACTTATTGATTTTTTATGAAGGCCCTATCAGGATTGGCATTTTAAGTACATGAAAAAAGTCATTCAAGCAGGCAAAAAACATCTACATGTTGATATAGTTTTTATTCCATGATTCTAATTTCTAAAAAAATGATTGCTGCTTCAATCTCTTAAAAGATGCCGTTGTGAACGATGCATTTTGGTATGTATCTTTTAAGGAATATATAATTATTGGATTAAAAAGTATATTTTTCCCTTGGTAGAAAAGGACAATATTTTGTTAGTATTTTTTTGAATCATATTTATGATGTTCTTGTCCATAATTCTTGCAACTATTCTTAGGCTAAGATCAAGTGCAATGAAAACGTCTAGTTGTAAATGTTACTTTTATTCTTGAATCTAATCAATGATTGCTGCTCCGAACCTCTTACAGTATGCAGTGAAAAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGCGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAAGTGAGTACAGTTGATCTTTTTTTTCAAAGAAGTATTTGTGGTTTAAAATTCTTTTCAAGATTTTGACTGCTGTTTCTTTCTTTTGTTTTGGGCAGCACTGCTAGTGCGGTAACTGTTAGAAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAAGTTAGATTTATATTTTGTTTTCCTTCCGTCTTGTGTTATACTACCGGTTTGATAGTTTAGAGATATTGGAAGAAGATTGTTCTAAGCAATTTGTGTACCCATTTGACTTTATTCCTAAGTTCTCACTCTGGAGCTTCTAACCTAGCTCTTCTTTGTGTTTTTATCCATTTGAAATATCCTGGATTTTTGGGACACATCTCTACTTTTTGCTCAGTTGGCAAAATTGTCTTGCTTTCAATTTTTATCAGATATCGAAATTTGGCTTGCTTTTTTTTTTTTTAAATATGTATTTTCATCTCTTGGGAGACTTTTCTAGTAACAAAGGAGTACTATAATACATTATGTTTACGATAAAAATCCGCTATTC

mRNA sequence

TCCCGCTTAGCCGTTCGGTCTCTGCATCAGCGTCTGTCCAGAGGTGCCCTTGTTCCGTCAAAGCCTCAACAATGACGAAAAGAACCAAGAAGGCTGGCATTGTCGGCAAATACGGTACCAGATATGGTGCTAGTCTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGCGGAAAGTATGCAGTGAAAAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGCGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCTAGTGCGGTAACTGTTAGAAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAAGTTAGATTTATATTTTGTTTTCCTTCCGTCTTGTGTTATACTACCGGTTTGATAGTTTAGAGATATTGGAAGAAGATTGTTCTAAGCAATTTGTGTACCCATTTGACTTTATTCCTAAGTTCTCACTCTGGAGCTTCTAACCTAGCTCTTCTTTGTGTTTTTATCCATTTGAAATATCCTGGATTTTTGGGACACATCTCTACTTTTTGCTCAGTTGGCAAAATTGTCTTGCTTTCAATTTTTATCAGATATCGAAATTTGGCTTGCTTTTTTTTTTTTTAAATATGTATTTTCATCTCTTGGGAGACTTTTCTAGTAACAAAGGAGTACTATAATACATTATGTTTACGATAAAAATCCGCTATTC

Coding sequence (CDS)

ATGACGAAAAGAACCAAGAAGGCTGGCATTGTCGGCAAATACGGTACCAGATATGGTGCTAGTCTGAGGAAGCAGATTAAGAAGATGGAAGTCAGTCAGCACAGCAAATACTTCTGTGAGTTCTGCGGAAAGTATGCAGTGAAAAGGAAGGCTGTTGGGATATGGGGTTGCAAGGACTGCGGAAAGGTGAAAGCCGGAGGTGCCTACACATTGAACACTGCTAGTGCGGTAACTGTTAGAAGCACAATCCGAAGGTTGAGGGAGCAGACTGAGAGTTAA

Protein sequence

MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES*

Homology

[Close]

BLAST of MELO3C006280 vs. Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-46
Identity = 91/92 (98.91%), Postives = 89/92 (96.74%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK C
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-46
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of MELO3C006280 vs. Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-46
Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of MELO3C006280 vs. Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.2e-45
Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of MELO3C006280 vs. Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-45
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. TrEMBL
Match: M5WNW1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]

BLAST of MELO3C006280 vs. TrEMBL
Match: A0A067JYD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. TrEMBL
Match: A0A0V0GYQ6_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 15  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 74

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 75  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 106

[Close]

BLAST of MELO3C006280 vs. TrEMBL
Match: A0A118JX09_CYNCS (Ribosomal protein L37ae OS=Cynara cardunculus var. scolymus GN=Ccrd_002690 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. TrEMBL
Match: K4CND1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. TAIR10
Match: AT3G10950.1 (AT3G10950.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 182.2 bits (461), Expect = 1.5e-46
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. TAIR10
Match: AT3G60245.1 (AT3G60245.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 179.5 bits (454), Expect = 9.6e-46
Identity = 85/91 (93.41%), Postives = 85/91 (93.41%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

[Close]

BLAST of MELO3C006280 vs. NCBI nr
Match: gi|641866750|gb|KDO85434.1| (hypothetical protein CISIN_1g045338mg [Citrus sinensis])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 43  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 102

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 103 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 134

[Close]

BLAST of MELO3C006280 vs. NCBI nr
Match: gi|595849622|ref|XP_007209764.1| (hypothetical protein PRUPE_ppa013350mg [Prunus persica])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]

BLAST of MELO3C006280 vs. NCBI nr
Match: gi|225427377|ref|XP_002282974.1| (PREDICTED: 60S ribosomal protein L37a [Vitis vinifera])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. NCBI nr
Match: gi|565482480|ref|XP_006298880.1| (hypothetical protein CARUB_v10015000mg [Capsella rubella])

HSP 1 Score: 189.1 bits (479), Expect = 3.4e-45
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of MELO3C006280 vs. NCBI nr
Match: gi|702335612|ref|XP_010055398.1| (PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis])

HSP 1 Score: 189.1 bits (479), Expect = 3.4e-45
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVG+WGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGVWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

The following BLAST results are available for this feature:

BLAST of MELO3C006280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL37A_GOSHI	1.1e-46	98.91	60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1	[more]
RL372_ORYSJ	1.4e-46	96.74	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=...	[more]
RL371_ORYSJ	1.4e-46	96.74	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=...	[more]
RL37A_PSEMZ	1.2e-45	96.70	60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1	[more]
R37A1_ARATH	2.6e-45	94.57	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV...	[more]

BLAST of MELO3C006280 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WNW1_PRUPE	1.4e-45	100.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1	[more]
A0A067JYD1_JATCU	1.4e-45	100.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1	[more]
A0A0V0GYQ6_SOLCH	1.4e-45	100.00	Putative ovule protein (Fragment) OS=Solanum chacoense PE=3 SV=1	[more]
A0A118JX09_CYNCS	1.4e-45	100.00	Ribosomal protein L37ae OS=Cynara cardunculus var. scolymus GN=Ccrd_002690 PE=3 ...	[more]
K4CND1_SOLLC	1.4e-45	100.00	Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1	[more]

BLAST of MELO3C006280 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10950.1	1.5e-46	94.57	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	9.6e-46	93.41	Zinc-binding ribosomal protein family protein	[more]

BLAST of MELO3C006280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641866750\|gb\|KDO85434.1\|	2.0e-45	100.00	hypothetical protein CISIN_1g045338mg [Citrus sinensis]	[more]
gi\|595849622\|ref\|XP_007209764.1\|	2.0e-45	100.00	hypothetical protein PRUPE_ppa013350mg [Prunus persica]	[more]
gi\|225427377\|ref\|XP_002282974.1\|	2.0e-45	100.00	PREDICTED: 60S ribosomal protein L37a [Vitis vinifera]	[more]
gi\|565482480\|ref\|XP_006298880.1\|	3.4e-45	98.91	hypothetical protein CARUB_v10015000mg [Capsella rubella]	[more]
gi\|702335612\|ref\|XP_010055398.1\|	3.4e-45	97.83	PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006751	glutathione catabolic process
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0017168	5-oxoprolinase (ATP-hydrolyzing) activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47612	melon EST collection version 4.0	transcribed_cluster
MU60830	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006280T1	MELO3C006280T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47612	MU47612	transcribed_cluster
MU60830	MU60830	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C006280	Csa3G129540	Cucumber (Chinese Long) v2	cumeB236
MELO3C006280	Cla021388	Watermelon (97103) v1	mewmB461
MELO3C006280	ClCG06G008110	Watermelon (Charleston Gray)	mewcgB441
MELO3C006280	ClCG05G002990	Watermelon (Charleston Gray)	mewcgB427
MELO3C006280	ClCG09G012610	Watermelon (Charleston Gray)	mewcgB409
MELO3C006280	Cla97C05G083620	Watermelon (97103) v2	mewmbB434
MELO3C006280	Cla97C06G117830	Watermelon (97103) v2	mewmbB448
MELO3C006280	Bhi01G000131	Wax gourd	mewgoB531
MELO3C006280	CSPI03G10450	Wild cucumber (PI 183967)	cpimeB230
MELO3C006280	CSPI03G47330	Wild cucumber (PI 183967)	cpimeB236
MELO3C006280	CSPI02G08710	Wild cucumber (PI 183967)	cpimeB145
MELO3C006280	Cucsa.256770	Cucumber (Gy14) v1	cgymeB439
MELO3C006280	CmaCh14G019210	Cucurbita maxima (Rimu)	cmameB242
MELO3C006280	CmaCh17G000740	Cucurbita maxima (Rimu)	cmameB343
MELO3C006280	CmaCh06G011910	Cucurbita maxima (Rimu)	cmameB763
MELO3C006280	CmoCh17G000790	Cucurbita moschata (Rifu)	cmomeB336
MELO3C006280	CmoCh14G019760	Cucurbita moschata (Rifu)	cmomeB230
MELO3C006280	CmoCh06G012290	Cucurbita moschata (Rifu)	cmomeB755
MELO3C006280	Lsi09G011070	Bottle gourd (USVL1VR-Ls)	lsimeB029
MELO3C006280	Lsi05G018760	Bottle gourd (USVL1VR-Ls)	lsimeB378
MELO3C006280	Lsi05G000320	Bottle gourd (USVL1VR-Ls)	lsimeB386
MELO3C006280	Cp4.1LG08g02450	Cucurbita pepo (Zucchini)	cpemeB813
MELO3C006280	Cp4.1LG03g17780	Cucurbita pepo (Zucchini)	cpemeB585
MELO3C006280	CsGy3G010560	Cucumber (Gy14) v2	cgybmeB200
MELO3C006280	Carg06314	Silver-seed gourd	carmeB0941
MELO3C006280	Carg10164	Silver-seed gourd	carmeB0236
MELO3C006280	Carg14902	Silver-seed gourd	carmeB0622
MELO3C006280	CsaV3_3G010610	Cucumber (Chinese Long) v3	cucmeB236

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
MELO3C006280	MELO3C003342	Melon (DHL92) v3.5.1	memeB141

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C006280	Silver-seed gourd	carmeB1050
MELO3C006280	Cucumber (Chinese Long) v3	cucmeB244
MELO3C006280	Watermelon (97103) v2	mewmbB428
MELO3C006280	Wax gourd	mewgoB513
MELO3C006280	Cucumber (Gy14) v1	cgymeB533
MELO3C006280	Wild cucumber (PI 183967)	cpimeB238
MELO3C006280	Watermelon (97103) v1	mewmB456
MELO3C006280	Cucurbita pepo (Zucchini)	cpemeB141
MELO3C006280	Cucurbita pepo (Zucchini)	cpemeB316
MELO3C006280	Bottle gourd (USVL1VR-Ls)	lsimeB445
MELO3C006280	Cucumber (Gy14) v2	cgybmeB208