CmoCh08G009800 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G009800
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal protein L37a-2
Location	Cmo_Chr08 : 6381244 .. 6383135 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAACCGCCACGGCCTTTGTCCAGCCGCGCAGGGAAGTGCTGAAGATTTCTAGGGTTTCTGATCTCTCCCGCTAGTTCGCCAAAATGGTAATCCAAATTCCCATCGCCTATTGTTCGTTCATTTCTATCTTCATGTTTGGAGCTTAGGAATCCTTTGATAGAGATTATTTTGTGTATTTCATAGACGAAATTGATTGGATATTTGGTGATAACGTCTCTTGGGCTTTTAACAATGCTCTGTGTTAAGCGATCAAGTTCTTGTTGGTTGGGTTTGTTTCGAGAGAAATTTGAAGGGACTAGATTGATGTAGGATTTCCTGAATGTTGTTGATCAGCTTTCTTAATAAGTTCATTATCCTTGTCTAGAGGTTTATGTCTGCAATATTTTGATATTCAGGACATGAAAGATGAAGGCTAGGCTAGCAGGACATTGGTTTCTATTGATTTAGCACCTAGAAGGCATATGCAAGTGCTGTAGTAAATTCACCAAGATTAATCCTGTTCTACATTTTGGTTTTTTACGGACTTTTATATTGTAGTAAAATTCAAACTAATGGCAACAATGTTTTCAATCCATTTAGTTATTGCTGGATGTTAGGTAGGGAAGATTAATGCGATAAATATGCTGAATGTCGAATCTTTCTTTTGGACTTCTCGTTCTCCTTTTGAACCAGATACCAGAGTTTGTGTTAGTAGTGTTGTCTAGCTATCCAAGGAGTTGACGCAATATATATTCCTAATGGCTTATTCGATCATTAATAATTTTTTATGTCATGAACTCATAAATCAGACTTCTGGAATCTTGCCATAGAATTCTGTTCACCCTTTTTATTTATTCTCCTTTTTCTTCTTGATGGTTGGATCCGCAACTTTCTCATTACCTTTTATGATGTTGTGTAGACAAAGAGAACCAAGAAGGCTGGCATCGTTGGCAAGTATGGTATGTGATTCTATCATTCTTATTCCCAAGATAAGATTGAACTAAAAATGTTGGGAGAGGGAATATGTATAGGATTCTGTTTCTCATAAAAAAAGATTTTGTGTAGGATTTTTTGGAATTTGGTGAAAGATTTTGATAGAAAGAATATTATGATGGTTGCATTGATAGAGAGATACTCTTCACTGGTCTGGAATTTACATTAGTTGATCAAGCATTTTTCTTGTTTGCTAGATGACAACCCTCCCCTCTCTTTGTCTTACTCTTAATTTTATATATAACATATTAAAAATGCTTTCTTGATGATTACAGGCACTCGTTATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTAAGTCAGCACAGCAAGTACTTCTGTGAGTTTTGTGGGAAGGTACAACATTGTTTAAAATGCTCGTTTTGGCGTCCTTGTGAACGTTTATTTGAATCTATAAATGTGAAACATTTGAGTAATGTACGATCTGTCCTTTCAGTATGCGGTGAAGAGGAAGGCTGTGGGAATATGGGGTTGCAAAGATTGCGGTAAAGTGAAAGCAGGAGGGGCTTACACGTTGAAGTAAGGATGCTTGAGATTGCTTTCTGTGTATGTCTTTCTTATTCCCAAACTTGTTTCAATGTTTTGACTATGTATGTTGTTCGTTAATGACAGTACTGCAAGTGCCGTGACTGTGAGGAGTACCATAAGAAGGTTGAGGGAGCAGACAGAAAGCTAGATGAACTACCAGATTTATCATTTCTATCAATTGAGGAGGAGGCATGGAGTAATTTTGTTGAGGTTTAGTCCCTTTAATTTCGTATATTTTTCCCGAATTTTTTGTATCTTCTCTACGAACGAAAGTTATGAAGTTAATCAAGTTTGTTGAATCTAGTTTTGACGATATTTATTTTAGAATTTGAATTTTAGTTTAGCATTATGAGCTACAAA

mRNA sequence

CAAAAAACCGCCACGGCCTTTGTCCAGCCGCGCAGGGAAGTGCTGAAGATTTCTAGGGTTTCTGATCTCTCCCGCTAGTTCGCCAAAATGACAAAGAGAACCAAGAAGGCTGGCATCGTTGGCAAGTATGGCACTCGTTATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTAAGTCAGCACAGCAAGTACTTCTGTGAGTTTTGTGGGAAGTATGCGGTGAAGAGGAAGGCTGTGGGAATATGGGGTTGCAAAGATTGCGGTAAAGTGAAAGCAGGAGGGGCTTACACGTTGAATACTGCAAGTGCCGTGACTGTGAGGAGTACCATAAGAAGGTTGAGGGAGCAGACAGAAAGCTAGATGAACTACCAGATTTATCATTTCTATCAATTGAGGAGGAGGCATGGAGTAATTTTGTTGAGGTTTAGTCCCTTTAATTTCGTATATTTTTCCCGAATTTTTTGTATCTTCTCTACGAACGAAAGTTATGAAGTTAATCAAGTTTGTTGAATCTAGTTTTGACGATATTTATTTTAGAATTTGAATTTTAGTTTAGCATTATGAGCTACAAA

Coding sequence (CDS)

ATGACAAAGAGAACCAAGAAGGCTGGCATCGTTGGCAAGTATGGCACTCGTTATGGTGCTAGTTTGAGGAAGCAAATTAAGAAGATGGAAGTAAGTCAGCACAGCAAGTACTTCTGTGAGTTTTGTGGGAAGTATGCGGTGAAGAGGAAGGCTGTGGGAATATGGGGTTGCAAAGATTGCGGTAAAGTGAAAGCAGGAGGGGCTTACACGTTGAATACTGCAAGTGCCGTGACTGTGAGGAGTACCATAAGAAGGTTGAGGGAGCAGACAGAAAGCTAG

Homology

[Close]

BLAST of CmoCh08G009800 vs. Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-45
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCK C
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKAC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. Swiss-Prot
Match: RL371_ORYSJ (60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-45
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of CmoCh08G009800 vs. Swiss-Prot
Match: RL372_ORYSJ (60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 2.6e-45
Identity = 89/92 (96.74%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92

[Close]

BLAST of CmoCh08G009800 vs. Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.2e-44
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK+AVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91

[Close]

BLAST of CmoCh08G009800 vs. Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 4.9e-44
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. TrEMBL
Match: A0A067JYD1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. TrEMBL
Match: A0A0V0GVM5_SOLCH (Putative ovule protein OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. TrEMBL
Match: A0A0B0N803_GOSAR (60S ribosomal L37a OS=Gossypium arboreum GN=F383_10947 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. TrEMBL
Match: M0ZN48_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001690 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. TrEMBL
Match: M5WNW1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.6e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]

BLAST of CmoCh08G009800 vs. TAIR10
Match: AT3G10950.1 (AT3G10950.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKA IVGKYGTRYGASLRKQIKKMEVSQH+KYFCEFCGKY+VKRK VGIWGCKDC
Sbjct: 1  MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. TAIR10
Match: AT3G60245.1 (AT3G60245.1 Zinc-binding ribosomal protein family protein)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-44
Identity = 85/91 (93.41%), Postives = 87/91 (95.60%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          M KRTKK GIVGKYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGKY VKRKAVGIWGCKDC
Sbjct: 1  MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 92
          GKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91

[Close]

BLAST of CmoCh08G009800 vs. NCBI nr
Match: gi|641866750|gb|KDO85434.1| (hypothetical protein CISIN_1g045338mg [Citrus sinensis])

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 43  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 102

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 103 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 134

[Close]

BLAST of CmoCh08G009800 vs. NCBI nr
Match: gi|595849622|ref|XP_007209764.1| (hypothetical protein PRUPE_ppa013350mg [Prunus persica])

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1   MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
           MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 37  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 96

Query: 61  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
           GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 97  GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 128

[Close]

BLAST of CmoCh08G009800 vs. NCBI nr
Match: gi|225427377|ref|XP_002282974.1| (PREDICTED: 60S ribosomal protein L37a [Vitis vinifera])

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-44
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. NCBI nr
Match: gi|565482480|ref|XP_006298880.1| (hypothetical protein CARUB_v10015000mg [Capsella rubella])

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-44
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92

[Close]

BLAST of CmoCh08G009800 vs. NCBI nr
Match: gi|702335612|ref|XP_010055398.1| (PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis])

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-44
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 1


Query: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDC 60
          MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVG+WGCKDC
Sbjct: 1  MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGVWGCKDC 60

Query: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTES 93
          GK+KAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct: 61 GKIKAGGAYTLNTASAVTVRSTIRRLREQTES 92

The following BLAST results are available for this feature:

BLAST of CmoCh08G009800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL37A_GOSHI	2.0e-45	98.91	60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1	[more]
RL371_ORYSJ	2.6e-45	96.74	60S ribosomal protein L37a-1 OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=...	[more]
RL372_ORYSJ	2.6e-45	96.74	60S ribosomal protein L37a-2 OS=Oryza sativa subsp. japonica GN=Os05g0557000 PE=...	[more]
RL37A_PSEMZ	2.2e-44	96.70	60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1	[more]
R37A1_ARATH	4.9e-44	94.57	Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=3 SV...	[more]

BLAST of CmoCh08G009800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067JYD1_JATCU	2.6e-44	100.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14663 PE=3 SV=1	[more]
A0A0V0GVM5_SOLCH	2.6e-44	100.00	Putative ovule protein OS=Solanum chacoense PE=3 SV=1	[more]
A0A0B0N803_GOSAR	2.6e-44	100.00	60S ribosomal L37a OS=Gossypium arboreum GN=F383_10947 PE=3 SV=1	[more]
M0ZN48_SOLTU	2.6e-44	100.00	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001690 PE=3 SV=1	[more]
M5WNW1_PRUPE	2.6e-44	100.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013350mg PE=3 SV=1	[more]

BLAST of CmoCh08G009800 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10950.1	2.8e-45	94.57	Zinc-binding ribosomal protein family protein	[more]
AT3G60245.1	1.8e-44	93.41	Zinc-binding ribosomal protein family protein	[more]

BLAST of CmoCh08G009800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641866750\|gb\|KDO85434.1\|	3.8e-44	100.00	hypothetical protein CISIN_1g045338mg [Citrus sinensis]	[more]
gi\|595849622\|ref\|XP_007209764.1\|	3.8e-44	100.00	hypothetical protein PRUPE_ppa013350mg [Prunus persica]	[more]
gi\|225427377\|ref\|XP_002282974.1\|	3.8e-44	100.00	PREDICTED: 60S ribosomal protein L37a [Vitis vinifera]	[more]
gi\|565482480\|ref\|XP_006298880.1\|	6.4e-44	98.91	hypothetical protein CARUB_v10015000mg [Capsella rubella]	[more]
gi\|702335612\|ref\|XP_010055398.1\|	6.4e-44	97.83	PREDICTED: 60S ribosomal protein L37a [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002674	Ribosomal_L37ae
IPR011331	Ribosomal_L37ae/L37e
IPR011332	Ribosomal_zn-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G009800.1	CmoCh08G009800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002674	Ribosomal protein L37ae	HAMAP	MF_00327	Ribosomal_L37Ae	coord: 4..72 score: 19
IPR002674	Ribosomal protein L37ae	PFAM	PF01780	Ribosomal_L37ae	coord: 4..88 score: 8.1
IPR002674	Ribosomal protein L37ae	TIGRFAMs	TIGR00280	TIGR00280	coord: 1..91 score: 2.0
IPR011331	Ribosomal protein L37ae/L37e	GENE3D	G3DSA:2.20.25.30		coord: 10..91 score: 2.8
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 10..82 score: 1.04

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G009800	Cucsa.266000	Cucumber (Gy14) v1	cgycmoB0736
CmoCh08G009800	CmaCh17G000740	Cucurbita maxima (Rimu)	cmacmoB379
CmoCh08G009800	CmaCh08G010080	Cucurbita maxima (Rimu)	cmacmoB912
CmoCh08G009800	Cla010575	Watermelon (97103) v1	cmowmB863
CmoCh08G009800	Csa2G120410	Cucumber (Chinese Long) v2	cmocuB870
CmoCh08G009800	MELO3C020369	Melon (DHL92) v3.5.1	cmomeB830
CmoCh08G009800	ClCG06G008110	Watermelon (Charleston Gray)	cmowcgB797
CmoCh08G009800	CSPI02G08710	Wild cucumber (PI 183967)	cmocpiB881
CmoCh08G009800	Lsi09G011070	Bottle gourd (USVL1VR-Ls)	cmolsiB805
CmoCh08G009800	Cp4.1LG17g03080	Cucurbita pepo (Zucchini)	cmocpeB853
CmoCh08G009800	MELO3C020369.2	Melon (DHL92) v3.6.1	cmomedB936
CmoCh08G009800	CsaV3_2G011060	Cucumber (Chinese Long) v3	cmocucB1030
CmoCh08G009800	Cla97C06G117830	Watermelon (97103) v2	cmowmbB893
CmoCh08G009800	Bhi12G001251	Wax gourd	cmowgoB1095
CmoCh08G009800	CsGy2G008970	Cucumber (Gy14) v2	cgybcmoB256
CmoCh08G009800	Carg11035	Silver-seed gourd	carcmoB1452
CmoCh08G009800	Carg10164	Silver-seed gourd	carcmoB0323

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G009800	CmoCh17G000790	Cucurbita moschata (Rifu)	cmocmoB324

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G009800	Cucurbita moschata (Rifu)	cmocmoB233
CmoCh08G009800	Cucurbita moschata (Rifu)	cmocmoB310
CmoCh08G009800	Cucurbita moschata (Rifu)	cmocmoB484
CmoCh08G009800	Cucumber (Gy14) v1	cgycmoB0568
CmoCh08G009800	Cucumber (Gy14) v1	cgycmoB0721
CmoCh08G009800	Cucurbita maxima (Rimu)	cmacmoB279
CmoCh08G009800	Cucurbita maxima (Rimu)	cmacmoB365
CmoCh08G009800	Cucurbita maxima (Rimu)	cmacmoB837
CmoCh08G009800	Wild cucumber (PI 183967)	cmocpiB882
CmoCh08G009800	Wild cucumber (PI 183967)	cmocpiB883
CmoCh08G009800	Cucumber (Chinese Long) v2	cmocuB871
CmoCh08G009800	Cucumber (Chinese Long) v2	cmocuB872
CmoCh08G009800	Melon (DHL92) v3.5.1	cmomeB832
CmoCh08G009800	Melon (DHL92) v3.5.1	cmomeB828
CmoCh08G009800	Watermelon (Charleston Gray)	cmowcgB792
CmoCh08G009800	Watermelon (Charleston Gray)	cmowcgB799
CmoCh08G009800	Watermelon (97103) v1	cmowmB856
CmoCh08G009800	Cucurbita pepo (Zucchini)	cmocpeB833
CmoCh08G009800	Cucurbita pepo (Zucchini)	cmocpeB843
CmoCh08G009800	Bottle gourd (USVL1VR-Ls)	cmolsiB797
CmoCh08G009800	Bottle gourd (USVL1VR-Ls)	cmolsiB823
CmoCh08G009800	Cucumber (Gy14) v2	cgybcmoB257
CmoCh08G009800	Melon (DHL92) v3.6.1	cmomedB935
CmoCh08G009800	Melon (DHL92) v3.6.1	cmomedB940
CmoCh08G009800	Silver-seed gourd	carcmoB0326
CmoCh08G009800	Silver-seed gourd	carcmoB1289
CmoCh08G009800	Cucumber (Chinese Long) v3	cmocucB1031
CmoCh08G009800	Cucumber (Chinese Long) v3	cmocucB1032
CmoCh08G009800	Watermelon (97103) v2	cmowmbB896
CmoCh08G009800	Watermelon (97103) v2	cmowmbB886
CmoCh08G009800	Wax gourd	cmowgoB1084