CmoCh17G000250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G000250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding domain, putative
Location	Cmo_Chr17 : 121370 .. 124987 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCAGCGCCCTTTTATCCCGTTTTTCCTTCTTCACCAATCTTCGTTCCCGCTTCTCTACTACAACCACAACCCACGCCGGAACGCCATCTCCGCCGCAGTCGCATCCCATCTCCATCCCTTCCTCTCTTTCGATATCCCCTCTAGATTTCCGGTTAAAGCTTCATCGCCTACTCTATTACTTTCTTTCTCCACTCTCTGGGTAAGTTGTAAATTTAAATTTCGATTCCATTTGATCCGCACCCATTTCAATTTTAAGTTCTTTTTCTCCTGTTCTTCTATGGTCTATACTAAGATGCCTGAATTTTATTTTTGTATGCCACTCACCCTTCCAGTTTAATTTATTAGTGGGAGGTTGTTGAGTGAAATTCGCTCTGTGTTGTTTTGAATTTACATTTCTGGTTCTTGTATTGAAGCTATGGTTGGTCAGGATATGAATTGTTTTGTACTTCTTTTTTGGATGAAATATTTACAAGTTTTAGAGTTCTTGTTTGTATGTTCTAGTGTTTATAGTTTCAATATTGAGTTAGTGCCATTCTTTTGAGCAATGAATTTCTGCCATCAAAGGGAGCCTTCCTCCGATGGAAATTTCCAAAGCCTTTTGAGAGTGGAGAGCCAAATTCTTATTTTCCTTAAGGGAAGAGGTTGACTTTGCTCCAAGGAACAAAATGGGAGCCACCATTTTTCATAGCTTACCTCGCGAAAGAAGTTCCTTATGATTCTTTCAACATTGTTGACAATGACAACCAGTTACCATCTTGATGCCTCTTTCGCCTTGGGATAGGCATAGATTGTTGGAGAAAAAAGAAAAAGAAGTGTTGTCATCCAATTTTGGCATTTTACTTTTGAGTAGTTTTAATCTCATTGAACTCCCAAAAGCTATTTAAGTGTTGATTACATTTTCGTTTTGCATATCCTGCTAATTACAAGTTGCAGTTTATATGTGTCCCCTGAAACCGTCTCTAGGATGTCTGATTATTTTCTGAAAATCTTTGTTTCTCTGAATTAAGGCGTCTTATGGATGGACAAGAGAACATACTTGAAGCCATATACGAAGAAGATGACTTGGAAAATGATGATGTTGAAATGGTCGATGTGGAAGAAGGGGAGTTCGTTGAGGGCAATATCAGTACAGAGAAAAGCAGTCTTACAGATGTCCAAGCGCCAAGTATAGATCATAAAAGTAAAAATCGTAAACGTCGGTCAAAGAAAAAGAAGAACAAAAGAAAGACATATGAGTCAGGTTCAAATGGCACTGATATTAACAGGTGAAGTGAAATTTTCTAATCATGTTGTGTATGCATTAAACTGCACTTTCTTTAGATTTTGTCTTTGGGGAATCCATATTAGTTTTGTGAAGCAAATAAGGATAGATTAATAGATTGATTAGTAGCCATTAAGAAATAGCAATTTTTGCCCTGACTTCTATATTATGCTGATTTTTGTTTCTTTCAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAATCATACATGGTGTACACTGCTGTAGGCTGTCTGGGAGTCTCTGCATTAAGTGAACTTATCAAAGAGGTAATTATTATCTTTTTTGAACCTGATAGAAGAATACTTTTTTTGCTTGAGTGATGAAAATTTATGAATAATCCATTATTGTTAGTTTGAAAACTTTTCTTCTGGTTTTCTATGTTTTGTTTGAAAATGAACCAAATTGACCAACCCTATCTAACCAAACCACGTCAACGAGTTTTTGACTGGGCTGTCTAATCATGGCCATCCAGTCTCGACTCCAGTAAGTATCATACCACATAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTTGCTGAAGCCATTTGCTCCTTTTAACCTTGTTCTCTGAGCTGTGAACCATCTTGGCTGGACTACTGCATCTGTGCTATATAAGTTGATGTTGTTTTCCCAGCATTTTTTGGTTATGATCTCTGTAAGATATTTGTACTTTATACAGAAAATTTAGCATTATCACAATTCACAATCCCTCTTTTCCATCCACTTCCCTGAAACCACTACTCCACCTGATTACTTACTGAATCTAGACTTCATTGAAATGCGCTGGGAAGTTTTTTACAACGCTTACTTTTAACAAGTTTTTAACTAAATTATGCAGTTCAGTTGTGCATGTCCTATCATATTTTTGATCTTAGGGTTTGAGATTTGCTTTCATATGTGGGCTCTTGAAAATCTGTTTTCACTTCTAAAAAATTATAACCATTTATTGCCTTGTTTTGCCCTTTTGAGTTACTGATGTTGCTTCACTAATCTGTGGTTGATTTTTCTTGTAATTGTTTTAGCACTTCCCTTCCTACCATATGACACCATATGTTCTATTTATACAAGTTGACATGTTGGAACTCCAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGAACTGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAAATTATGAAACGAGCGAAAGAGTTTGAGGTATTTAACAAAACCTTTGTGACATCGTGACGTATTCCTTTGTTCTTTCCAATTGAATGTGCTACTCTTATTTTGGTCGCATAGAAAAATATTATCAATGTTCCTAGAGGAGACTCTTAAGGATTTTTCATTGCATGGCAAACGTTTCATCTTTCTGAATCTTTCACTTTATTCAGAGTGGCCTTAGTTTGCTAGGGAGCCTATATCTAATGACATTTCTCAAATTGTTGGGCTTATTTACTATCTGTTTTTATTTCTTAGTTTCTTTGTTCTTGAAATTCATGCTTATGTTAGAATGTGTCAAAATTCAATTTCTTCTGATGATCCTATCCGTGAAGCTAATCCTGCGATCATACGTATTTTTGTTTGTTTCATGATGGAGCAGAAACAATTTAAGCAACCAAATATCCGACGGGAGGCTACAGAAATTGGGAAAGCAAGTTCTCAGGATGTTCTTCACCTGTTCTCCGAAGGAGCTTCTCAAGATCAACCAGATAGCATCCAAAGCCTTACTCCGGAGCAGAATCAATCTAAAGAATCGAATTCCGAAGAAAAACGATCATCGGTTCACGAAAGATTAAGAGTACCAGTTTCATATGACGACGACATTCTTCGAGAGAATCCAAAAGAGGAAGATACAAGTTGATTGTGGTTAGATCTTCCCATTTTTTGAACAATTACTGTTGGTTTCTACTAGCTCATGGCTAACAAAGTCAACAGTGTTTACCTTAAAAAAAAAAAAGAGGCAGAAGAATGTTTCACAAACTGTGAGTTTGTTCCAATTTATTTTCAGTGGCTTTAGGCTACATTGGTTGAGGCTTGAGCGCTTTGGTTCTACAGGTGAGGATGGAATTGGCACATAGAAAGAAAATGGATTTATTGGGTTGCAAATGGAAAAAGGTTTTGCAATTGCTTTGACATTATATTCCTCCCTTTATCATTCTCCGTCGCTGAATGTGTAAATTATTAAAATCACACCCCCCCTCAAACTTAGAAGTTCGTAGATTTGACATATTTTGAGATAAGTAAAAGTTCTTTGATTAAAATAAACTCAGACTCTTTAATATAATCACG

mRNA sequence

TTCAGCGCCCTTTTATCCCGTTTTTCCTTCTTCACCAATCTTCGTTCCCGCTTCTCTACTACAACCACAACCCACGCCGGAACGCCATCTCCGCCGCAGTCGCATCCCATCTCCATCCCTTCCTCTCTTTCGATATCCCCTCTAGATTTCCGGTTAAAGCTTCATCGCCTACTCTATTACTTTCTTTCTCCACTCTCTGGGCGTCTTATGGATGGACAAGAGAACATACTTGAAGCCATATACGAAGAAGATGACTTGGAAAATGATGATGTTGAAATGGTCGATGTGGAAGAAGGGGAGTTCGTTGAGGGCAATATCAGTACAGAGAAAAGCAGTCTTACAGATGTCCAAGCGCCAAGTATAGATCATAAAAGTAAAAATCGTAAACGTCGGTCAAAGAAAAAGAAGAACAAAAGAAAGACATATGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAATCATACATGGTGTACACTGCTGTAGGCTGTCTGGGAGTCTCTGCATTAAGTGAACTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGAACTGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAAATTATGAAACGAGCGAAAGAGTTTGAGAAACAATTTAAGCAACCAAATATCCGACGGGAGGCTACAGAAATTGGGAAAGCAAGTTCTCAGGATGTTCTTCACCTGTTCTCCGAAGGAGCTTCTCAAGATCAACCAGATAGCATCCAAAGCCTTACTCCGGAGCAGAATCAATCTAAAGAATCGAATTCCGAAGAAAAACGATCATCGGTTCACGAAAGATTAAGAGTACCAGTTTCATATGACGACGACATTCTTCGAGAGAATCCAAAAGAGGAAGATACAAGTTGATTGTGGTTAGATCTTCCCATTTTTTGAACAATTACTGTTGGTTTCTACTAGCTCATGGCTAACAAAGTCAACAGTGTTTACCTTAAAAAAAAAAAAGAGGCAGAAGAATGTTTCACAAACTGTGAGTTTGTTCCAATTTATTTTCAGTGGCTTTAGGCTACATTGGTTGAGGCTTGAGCGCTTTGGTTCTACAGGTGAGGATGGAATTGGCACATAGAAAGAAAATGGATTTATTGGGTTGCAAATGGAAAAAGGTTTTGCAATTGCTTTGACATTATATTCCTCCCTTTATCATTCTCCGTCGCTGAATGTGTAAATTATTAAAATCACACCCCCCCTCAAACTTAGAAGTTCGTAGATTTGACATATTTTGAGATAAGTAAAAGTTCTTTGATTAAAATAAACTCAGACTCTTTAATATAATCACG

Coding sequence (CDS)

ATGGATGGACAAGAGAACATACTTGAAGCCATATACGAAGAAGATGACTTGGAAAATGATGATGTTGAAATGGTCGATGTGGAAGAAGGGGAGTTCGTTGAGGGCAATATCAGTACAGAGAAAAGCAGTCTTACAGATGTCCAAGCGCCAAGTATAGATCATAAAAGTAAAAATCGTAAACGTCGGTCAAAGAAAAAGAAGAACAAAAGAAAGACATATGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTTGTGTTGGATGCATGCAGACGTTTGAAAGAGAAAAAATCATACATGGTGTACACTGCTGTAGGCTGTCTGGGAGTCTCTGCATTAAGTGAACTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGAACTGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAAATTATGAAACGAGCGAAAGAGTTTGAGAAACAATTTAAGCAACCAAATATCCGACGGGAGGCTACAGAAATTGGGAAAGCAAGTTCTCAGGATGTTCTTCACCTGTTCTCCGAAGGAGCTTCTCAAGATCAACCAGATAGCATCCAAAGCCTTACTCCGGAGCAGAATCAATCTAAAGAATCGAATTCCGAAGAAAAACGATCATCGGTTCACGAAAGATTAAGAGTACCAGTTTCATATGACGACGACATTCTTCGAGAGAATCCAAAAGAGGAAGATACAAGTTGA

Homology

[Close]

BLAST of CmoCh17G000250 vs. TrEMBL
Match: A0A0A0KBJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076770 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 8.4e-109
Identity = 212/253 (83.79%), Postives = 231/253 (91.30%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60
           MDGQENILEAIYE+D LENDDVEM DVEEGEF++ NI+ EKSS TDVQAPS D +SKNRK
Sbjct: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRK 63

Query: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120
            R+KKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLGVSALSELIKEV
Sbjct: 64  HRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREAT
Sbjct: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183

Query: 181 EIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240
           E  K SSQ V HLFSEG+S++ PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYDD
Sbjct: 184 ETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDD 243

Query: 241 DILRENPKEEDTS 254
           D+L+ENPKEEDT+
Sbjct: 244 DLLQENPKEEDTT 256

[Close]

BLAST of CmoCh17G000250 vs. TrEMBL
Match: K7KI57_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G049800 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69
Identity = 156/254 (61.42%), Postives = 189/254 (74.41%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTE--KSSLTDVQAPSIDHKSKN 60
           M+  +NIL+AIYEED+L+ DDV+MVDVEEGE VE +      +SS  D+   + +  SKN
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDAQNVLGQSSAGDINEANQEPLSKN 60

Query: 61  RKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIK 120
           +KRR+ KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRRE 180
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+QPN+ + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPNVMQR 180

Query: 181 ATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSY 240
                + SSQ V   FS     +  DS    +  QNQ + + SEEK  SVH+RLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 241 DDDILRENPKEEDT 253
           DDD+L ENP  + T
Sbjct: 241 DDDLLGENPVNDTT 253

[Close]

BLAST of CmoCh17G000250 vs. TrEMBL
Match: A0A0B2RCY1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016360 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 8.5e-69
Identity = 155/254 (61.02%), Postives = 188/254 (74.02%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTE--KSSLTDVQAPSIDHKSKN 60
           M+  +NIL+AIYEED+L+ DDV+MVDVEEGE VE +      +SS  D+   + +  SKN
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDSQNVLGQSSAGDINEANQEPLSKN 60

Query: 61  RKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIK 120
           +KRR+ KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRRE 180
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+QP + + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPTVMQR 180

Query: 181 ATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSY 240
                + SSQ V   FS     +  DS    +  QNQ + + SEEK  SVH+RLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 241 DDDILRENPKEEDT 253
           DDD+L ENP  + T
Sbjct: 241 DDDLLGENPVNDTT 253

[Close]

BLAST of CmoCh17G000250 vs. TrEMBL
Match: W9S447_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021935 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.4e-68
Identity = 151/253 (59.68%), Postives = 192/253 (75.89%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLEND-DVEMVDVEEGEFVEGNISTE--KSSLTDVQAPSIDHKSK 60
           M+G E+IL+A+ EED+ E D D+EMVDVEEGE VE N+  +  +S+  +V   + + +SK
Sbjct: 1   MEGGESILDALNEEDNFEYDEDIEMVDVEEGELVEENLRNDLGQSNAGEVNVNNQESQSK 60

Query: 61  NRKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELI 120
           NRKRR+ KKKNKRK      N TDINRFVLD CRRLKEKKSYMVYTAVGCLG+SAL +LI
Sbjct: 61  NRKRRANKKKNKRKRSGPDPNVTDINRFVLDTCRRLKEKKSYMVYTAVGCLGISALCDLI 120

Query: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRR 180
           KEV+AVQACGGQMTADGRRFRTGGGILWSI+K REP AYKE+M +AKEFEKQFK P  ++
Sbjct: 121 KEVDAVQACGGQMTADGRRFRTGGGILWSIVKAREPKAYKEMMNKAKEFEKQFKLPYSKQ 180

Query: 181 EATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVS 240
              +    SS++V      G + +  +++Q  +  QNQ+++SN EE R SV +RLR+PVS
Sbjct: 181 ARRQRKDGSSENVTDAPMNGTTSNVSNALQVQSEVQNQNEQSNDEENRVSVGDRLRIPVS 240

Query: 241 YDDDILRENPKEE 251
           YDDD+L  +PK++
Sbjct: 241 YDDDLLGGDPKDD 253

[Close]

BLAST of CmoCh17G000250 vs. TrEMBL
Match: A0A0B2RCT3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_035314 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.2e-68
Identity = 154/254 (60.63%), Postives = 186/254 (73.23%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTE--KSSLTDVQAPSIDHKSKN 60
           M+  +NIL+AIYEED L+ DDV+MVDVEEGE VE +      +SS  D+  P+ +  SKN
Sbjct: 1   MEDGDNILDAIYEEDTLD-DDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKN 60

Query: 61  RKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIK 120
           +KRR+ KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRRE 180
           EV+A+Q CGGQ TADGRRFRTGGGILWSI+K REP  YKEI+K+AKEFEKQF+QPN+ + 
Sbjct: 121 EVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQR 180

Query: 181 ATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSY 240
                + SSQ V   FS     +  DS    +  QNQ + +  EEK  S H+RLR+PVSY
Sbjct: 181 PVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSY 240

Query: 241 DDDILRENPKEEDT 253
           DDD+L ENP  + T
Sbjct: 241 DDDLLGENPINDAT 253

[Close]

BLAST of CmoCh17G000250 vs. TAIR10
Match: AT3G20430.1 (AT3G20430.1 Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385))

HSP 1 Score: 193.0 bits (489), Expect = 2.3e-49
Identity = 125/265 (47.17%), Postives = 172/265 (64.91%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLEN-DDVEMVDVEEGEFV-------------EGNISTEKSSLTD 60
           M+G+E++L+AI EED  EN +DVEMVDVEEGE V             +G+   +K ++  
Sbjct: 1   MEGEESLLDAINEEDGFENLEDVEMVDVEEGEIVVDHDLDSGERQNDDGDGVKDKEAILG 60

Query: 61  VQAPSIDHKSKNRKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVG 120
            +   +   +KN KR+ KKKK K    +   +   ++ FV D CRRLKEKKSYM+YTAVG
Sbjct: 61  -EKNGLQQTNKN-KRKKKKKKRKGPVMDKPMS---VDWFVRDTCRRLKEKKSYMIYTAVG 120

Query: 121 CLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEF 180
           CLG++ALS+L+ EV A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEF
Sbjct: 121 CLGIAALSDLVNEVVAIETCGGQVTADGTRKRTSGGVLWNIIKARQPEAYREIMKKTKEF 180

Query: 181 EKQFKQPNIR-REATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKR 240
           EKQF+QPN R +   +  + SS +   L S   S D+    +       +  ES  E++R
Sbjct: 181 EKQFRQPNTRPKSGPKRDQGSSSE--GLASGNVSADEALVSEMCVMPVAEQTESKPEKER 240

Query: 241 SSVHERLRVPVSYDDDILRENPKEE 251
            SVHER+RVPVSY DD+ R+ P ++
Sbjct: 241 KSVHERIRVPVSY-DDLFRDAPLDD 257

[Close]

BLAST of CmoCh17G000250 vs. NCBI nr
Match: gi|659120327|ref|XP_008460135.1| (PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo])

HSP 1 Score: 402.5 bits (1033), Expect = 5.4e-109
Identity = 214/254 (84.25%), Postives = 232/254 (91.34%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60
           MDGQENILEAIYE D+ ENDDVEM DVEEGEF++ NI+ EKSS TDVQAPS D +SKNRK
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120
           RR+KKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAR 180

Query: 181 EIGKASSQDVLHLFSE-GASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYD 240
           E  K SSQ V HLFSE G+S++ PD +QS T E N+SKESNSEEKRSS+H+RLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 241 DDILRENPKEEDTS 254
           DD+L+ENPKEEDT+
Sbjct: 241 DDLLQENPKEEDTT 254

[Close]

BLAST of CmoCh17G000250 vs. NCBI nr
Match: gi|449454508|ref|XP_004144996.1| (PREDICTED: uncharacterized protein LOC101205280 [Cucumis sativus])

HSP 1 Score: 401.4 bits (1030), Expect = 1.2e-108
Identity = 212/253 (83.79%), Postives = 231/253 (91.30%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTEKSSLTDVQAPSIDHKSKNRK 60
           MDGQENILEAIYE+D LENDDVEM DVEEGEF++ NI+ EKSS TDVQAPS D +SKNRK
Sbjct: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRK 63

Query: 61  RRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120
            R+KKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLGVSALSELIKEV
Sbjct: 64  HRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREAT
Sbjct: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183

Query: 181 EIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240
           E  K SSQ V HLFSEG+S++ PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYDD
Sbjct: 184 ETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDD 243

Query: 241 DILRENPKEEDTS 254
           D+L+ENPKEEDT+
Sbjct: 244 DLLQENPKEEDTT 256

[Close]

BLAST of CmoCh17G000250 vs. NCBI nr
Match: gi|356509811|ref|XP_003523639.1| (PREDICTED: uncharacterized protein LOC100793038 [Glycine max])

HSP 1 Score: 271.2 bits (692), Expect = 1.9e-69
Identity = 156/254 (61.42%), Postives = 189/254 (74.41%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTE--KSSLTDVQAPSIDHKSKN 60
           M+  +NIL+AIYEED+L+ DDV+MVDVEEGE VE +      +SS  D+   + +  SKN
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDAQNVLGQSSAGDINEANQEPLSKN 60

Query: 61  RKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIK 120
           +KRR+ KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRRE 180
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+QPN+ + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPNVMQR 180

Query: 181 ATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSY 240
                + SSQ V   FS     +  DS    +  QNQ + + SEEK  SVH+RLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 241 DDDILRENPKEEDT 253
           DDD+L ENP  + T
Sbjct: 241 DDDLLGENPVNDTT 253

[Close]

BLAST of CmoCh17G000250 vs. NCBI nr
Match: gi|734396442|gb|KHN29738.1| (hypothetical protein glysoja_016360 [Glycine soja])

HSP 1 Score: 268.5 bits (685), Expect = 1.2e-68
Identity = 155/254 (61.02%), Postives = 188/254 (74.02%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLENDDVEMVDVEEGEFVEGNISTE--KSSLTDVQAPSIDHKSKN 60
           M+  +NIL+AIYEED+L+ DDV+MVDVEEGE VE +      +SS  D+   + +  SKN
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDSQNVLGQSSAGDINEANQEPLSKN 60

Query: 61  RKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIK 120
           +KRR+ KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRRE 180
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+QP + + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPTVMQR 180

Query: 181 ATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSY 240
                + SSQ V   FS     +  DS    +  QNQ + + SEEK  SVH+RLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 241 DDDILRENPKEEDT 253
           DDD+L ENP  + T
Sbjct: 241 DDDLLGENPVNDTT 253

[Close]

BLAST of CmoCh17G000250 vs. NCBI nr
Match: gi|703151155|ref|XP_010110045.1| (hypothetical protein L484_021935 [Morus notabilis])

HSP 1 Score: 267.7 bits (683), Expect = 2.1e-68
Identity = 151/253 (59.68%), Postives = 192/253 (75.89%), Query Frame = 1


Query: 1   MDGQENILEAIYEEDDLEND-DVEMVDVEEGEFVEGNISTE--KSSLTDVQAPSIDHKSK 60
           M+G E+IL+A+ EED+ E D D+EMVDVEEGE VE N+  +  +S+  +V   + + +SK
Sbjct: 1   MEGGESILDALNEEDNFEYDEDIEMVDVEEGELVEENLRNDLGQSNAGEVNVNNQESQSK 60

Query: 61  NRKRRSKKKKNKRKTYESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELI 120
           NRKRR+ KKKNKRK      N TDINRFVLD CRRLKEKKSYMVYTAVGCLG+SAL +LI
Sbjct: 61  NRKRRANKKKNKRKRSGPDPNVTDINRFVLDTCRRLKEKKSYMVYTAVGCLGISALCDLI 120

Query: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRR 180
           KEV+AVQACGGQMTADGRRFRTGGGILWSI+K REP AYKE+M +AKEFEKQFK P  ++
Sbjct: 121 KEVDAVQACGGQMTADGRRFRTGGGILWSIVKAREPKAYKEMMNKAKEFEKQFKLPYSKQ 180

Query: 181 EATEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVS 240
              +    SS++V      G + +  +++Q  +  QNQ+++SN EE R SV +RLR+PVS
Sbjct: 181 ARRQRKDGSSENVTDAPMNGTTSNVSNALQVQSEVQNQNEQSNDEENRVSVGDRLRIPVS 240

Query: 241 YDDDILRENPKEE 251
           YDDD+L  +PK++
Sbjct: 241 YDDDLLGGDPKDD 253

The following BLAST results are available for this feature:

BLAST of CmoCh17G000250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G000250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBJ7_CUCSA	8.4e-109	83.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076770 PE=4 SV=1	[more]
K7KI57_SOYBN	1.3e-69	61.42	Uncharacterized protein OS=Glycine max GN=GLYMA_04G049800 PE=4 SV=1	[more]
A0A0B2RCY1_GLYSO	8.5e-69	61.02	Uncharacterized protein OS=Glycine soja GN=glysoja_016360 PE=4 SV=1	[more]
W9S447_9ROSA	1.4e-68	59.68	Uncharacterized protein OS=Morus notabilis GN=L484_021935 PE=4 SV=1	[more]
A0A0B2RCT3_GLYSO	7.2e-68	60.63	Uncharacterized protein OS=Glycine soja GN=glysoja_035314 PE=4 SV=1	[more]

BLAST of CmoCh17G000250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20430.1	2.3e-49	47.17	Phosphorylated adapter RNA export protein, RNA-binding domain (Inter...	[more]

BLAST of CmoCh17G000250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120327\|ref\|XP_008460135.1\|	5.4e-109	84.25	PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo]	[more]
gi\|449454508\|ref\|XP_004144996.1\|	1.2e-108	83.79	PREDICTED: uncharacterized protein LOC101205280 [Cucumis sativus]	[more]
gi\|356509811\|ref\|XP_003523639.1\|	1.9e-69	61.42	PREDICTED: uncharacterized protein LOC100793038 [Glycine max]	[more]
gi\|734396442\|gb\|KHN29738.1\|	1.2e-68	61.02	hypothetical protein glysoja_016360 [Glycine soja]	[more]
gi\|703151155\|ref\|XP_010110045.1\|	2.1e-68	59.68	hypothetical protein L484_021935 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019385	PHAX_RNA-binding_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006408	snRNA export from nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G000250.1	CmoCh17G000250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019385	Phosphorylated adapter RNA export protein, RNA-binding domain	PFAM	PF10258	RNA_GG_bind	coord: 88..164 score: 1.9
None	No IPR available	PANTHER	PTHR13135	CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26	coord: 5..252 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G000250	Cucsa.362900	Cucumber (Gy14) v1	cgycmoB0999
CmoCh17G000250	CmaCh17G000240	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G000250	Cla006949	Watermelon (97103) v1	cmowmB348
CmoCh17G000250	Csa6G076770	Cucumber (Chinese Long) v2	cmocuB359
CmoCh17G000250	MELO3C022510	Melon (DHL92) v3.5.1	cmomeB309
CmoCh17G000250	ClCG06G000280	Watermelon (Charleston Gray)	cmowcgB319
CmoCh17G000250	CSPI06G05760	Wild cucumber (PI 183967)	cmocpiB362
CmoCh17G000250	Lsi09G019070	Bottle gourd (USVL1VR-Ls)	cmolsiB323
CmoCh17G000250	Cp4.1LG12g00220	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G000250	MELO3C022510.2	Melon (DHL92) v3.6.1	cmomedB354
CmoCh17G000250	CsaV3_6G006070	Cucumber (Chinese Long) v3	cmocucB0434
CmoCh17G000250	Bhi12G002294	Wax gourd	cmowgoB0459
CmoCh17G000250	CsGy6G005730	Cucumber (Gy14) v2	cgybcmoB735
CmoCh17G000250	Carg10209	Silver-seed gourd	carcmoB0320

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G000250	Cucurbita moschata (Rifu)	cmocmoB198
CmoCh17G000250	Cucurbita moschata (Rifu)	cmocmoB308
CmoCh17G000250	Cucurbita moschata (Rifu)	cmocmoB314
CmoCh17G000250	Cucurbita maxima (Rimu)	cmacmoB251
CmoCh17G000250	Cucurbita maxima (Rimu)	cmacmoB811
CmoCh17G000250	Cucurbita maxima (Rimu)	cmacmoB887
CmoCh17G000250	Cucurbita pepo (Zucchini)	cmocpeB357
CmoCh17G000250	Cucurbita pepo (Zucchini)	cmocpeB364
CmoCh17G000250	Silver-seed gourd	carcmoB0851
CmoCh17G000250	Silver-seed gourd	carcmoB1448
CmoCh17G000250	Watermelon (97103) v2	cmowmbB355