CsGy6G005730 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G005730
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RNA-binding domain, putative
Location	Chr6 : 5154985 .. 5159299 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCGTCTTCCTCCTAATGCATCAGTACTGAGCAAAACACCATTTCTTCCTTTCTACCTTTCTCCCTTTTTCCTTCTTCTTCAATCTTCATATCTCCTTCCAAACTTCTCTACTCTAAACCCACGATCCCACGCCCTCTCCCCCGTAGTCTCCATCGCTCTCTCCCTTAAGATTTCCCGTTAAAGCTTCACCGCCACTCCATTAATTCTTCTCCACTTTCTGGGTAAGTTTTATGATTGCATTTGAGGTTTCCCATTTCCATCGCTCTTTCCCTTATGATTTATTGTATCTGCTGCTCTCACTATTCGAGTTCATTTGATTACTGGGAGGCTGTTGACTACACTTATTGTACTTGTTTTGAAGCTTTGATTGTTAAGGATATGGATTGTTTTAGTTTATTTATGCTCAAATTTGTAGTTACCGTATTGAACTAAATCTTGTTACAGTGTTGGCAACTAAATCTTTCATCTTTGTATGAGCTTAATAAGAGACTCTTGATCTCTCCTAGGCCTTGATGTGGGCGCATACTTTTGGAGAAAAGAGAGGAAACAAATGTTTTGACAACCAATTTTGACATTTTACTGTTGAGTAATTTTTATTTCACTGAGCGCCCAAAAGCTATGCAAGTGTTGATTTCATTTCCGTCTTGCTATCCTGATAATTTCAAGTTGCAGTTTATATATGTTCCCTGATATTTTCTCTAGGATGTTTGATTATTTTATGAAATCCTTTGTTTCTCTGAATAAGGAGTGTCTGATTATTTTATATAGTTGATGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATAAGTTGGAAAATGATGATGTTGAAATGGCCGATGTGGAGGAAGGGGAGTTCATTGACGACAATATCAATATAGAGAAAAGCAGTTTTACAGATGTCCAAGCACCAAGTACGGATCAGAGAAGTAAAAATCGTAAACATCGGACAAAGAAAAAGAAGAACAAAAGAAAGTCAAGCGAGCCAGGTTCAAATGGCACTGATATAAACAGGTTACGTGGAATCTTCTAATCATGTTGTATATGCAATTGCATGGAAAAAGAAGCAATATTGCAAGCTTTCTTGAGATGCGTTTTTTGTTTGGAAATCCATTATAGTTTTGCCAAGTAATTGTAGATTTAACAGGACTTTTTACTCTGGTTGCTATGTTATTGTGCTGATTTCCGTGTTTTCTCAGGTTTGTGTTGAATGCATGCAGACTTTTGAAAGAGAAAAAATCGTACATGGTGTACACTGCTGTAGGTTGTCTTGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTATTATGATTTTCTTGTAACCTGATAAAAGAATATTTTGTTTGATTGAGTGATAAAAAATTATGTCTTATACATTAGTATTAGTTTGAAAACTTCCCTTCTGTTTTTTAAAGTTCTGTTTGAAAGTGAATTGAATTGACCAGCCACTAACCAAACCAACATAATTGAGTTCCATCGGTTTTCCCTTTTGGTTTGCATTCAGCCCCCTAGTGAGTACAACTCATGAATTATTTTACTGTTCACTAACTATGCCTTTGCTCACTACTTTTTGTATCCTCGGTACTTTGCCTAGGGCCACAAGCAATTGCCTTCCTGGTAAAAGTGAATTTCTTTAACTTAAATTTTGAGTTTTGACTGACCTGCCTAGACATGGCCATTCACGTTGGAAATGACTTGTGGGCTTGGGCTCATAAGCAAAGAACAAGACTCATAAGCAAAGTACATCGATTTTGTCCAACATTGGAGAATTTTGAAATACCAAGAGGGTATAAAATACCAAGGTATGTTAGGTGTGAGACTAAAGTATTTTGGTGGTGATAGCATAACTCTATCACCACAAGCGCGCCTTAGTATGTCAGGTCGGATAACCGCGCTTGTGCGAAAAAGAATCAACTTTTTATTTTCTATACGTTTGATTTTATAACTCCTATTTGGCAATTAAACATTTTGCTTTTTACAATTAATATTTTTCTCCGTTTCCTACCTGTTGGAAAACCCTACCTGGCCGTTTTCTTTTCTTCCTCTTTATCTATCATCATCTTAATCCAGATTTGGGTATCCGAAAACCATCTACTCTCTGTTCTTTAATCTTGTTCTTGATCTTGATTCTATTCCTTGTTCCGACGAGTGCACGTCGAAATAAGGAAGCTATGTTAACCTTGAGGAGCAACCGGCATTTGATTGGCACCACGGTTGTGCCAAAATTGCTTTCAAGGTAGTTGTTCGTCACAGCGCAGCAATTCCTTTTGAAATCTTATTAACAACAATTCACTCCAAACTCCAGTAAGTATCATACCACACAGCCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTTGCTGAAGTCATTTTGCTCCTTTTAACCTTGTTCTCTGAGCTGTGAATCACCATTGCTGGACTACTACATCTGTGCTATATAAGTTGATGCTATTATCCCAGCATATATTGGTTATGATCTCTGTAAGATATTTGTACTTTATTACAAAAAAAACCTTTAGTATTAATCGCAATTTACAATCAATCTTTTCCACCCACTTCCCTGAAAATACTACACCTGATTATTTTCACTGAATCCGGACTTCGTCAAAATGCTCTTGGAAGTTTTAACATGTACATTTAATTGGAATGCCCAAACTAAATTTGCAGCTCAGTTGTGCATGTCCTATCATACTTTTCATCTTGGGGTTTGAGATTTGCTTTCATGCGAACTCTTGAAAATCTGTTCACTTTTAAAAATTTATAACCGTTTGTCAAATTCTTTATATGCAGAAGAGCCCTTGCCTTGCTTTTCCCCTTTGAGTTACTGATGATGCTTAACTAGAGATAGGCAGCATAGTTAATCAATGGTTGATTTTGCTTGTAATTGTTTTAGCATTTTTCTTCTTTTACAATACGACACCCTATGATCTTATGTGCACAAGTTGACATGTCGGAATACCAGGTCAATGCAGTTCAAGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTACAAAGAGATAATGAAACGTGCAAAAGAGTTTGAGGTATTTAACAAGACCCTTGTGACATACTTTATAACTCGAAAAACCTTTACGTGTTTTTTCCTTTATTCTTATTAAAATAAGTGCTATTCTTATTTTGGCCACATAAAAAAAAAATACTATCAATATTCCTAGAGGACACTTCTAAAATTTTTCATTGTGAAGACAAACTTTTTCATCTTTTCAAACCTTTGATTTTATTCAGAGTGGGCTCAGTTTCCTAAGCCTGTTTCTAACGTTTGAAATTGCTGAGCTTATTTACTCTCTGTTTTCTTTCTTTTGGATTTTAATTGTATTTTGAAGAGTTGAACACGTACTTTTGAAGTATTGTAAACTCCGTCTCACAGTATAAGAAGTTAGGCATAAGATTGTTGTTTTCTAGTCATGGGATGCTCAAACTCCTTTGGCCAAACAAGGTGTAGAGTTCACAACCCTGTTTTCCCAACTACTTGCAGCAAGCACCCCCTCTGATGTTAGAATAGAAAATGCGTTGGAGTGAAATTCTGTATGATCCTATCGTGATGTTGTTCCTTCATTAGTTATTTCGTATTATACATATTTTTGTTACTTTCATGATGGTGCAGAAACAATTTAAGCAACCAAATGTGAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTTTTCTCTGAAGGATCTTCTAGAAATCTGCCAGATCACGTCCAAAGCTTTTCTTCAGAGCTGAATCAATCTAAGGAATCAAATTCCGAAGAAAAACTGTCTTCTATTCACGATAGATTAAGAGTACCAGTTTCATATGATGATGACCTCCTTCAAGAAAATCCGAAAGAGGAAGATACAACTGACTGTAGATAGGTTTTCCCATTTTTTTGAACAATTGCTGTTGGTTTTTAGTTCGTGTCTAACCAAATCAACAGTTTTTACCTCCAAAACATGAGGCAGAAGAATGTTCTATAAGCTGAGTTTGTTACTTTCATTTTCAGTGCCTTTTTGTTTTAGGCTGCTTTGGTTGAGTGCCTGCTTGTTCAGATGAGGTTGGAATTAGCCACATGGAAACAAATTGGATTTATTGGTTGTAAATGGGAAAAGATTTTGCAATGTTCCTCGTGCTCTGCTGTCATTTGAAACGATTTGAGAGAGAATAAATTTTTAAAAATTGTCTTTAGAGAAAAAAA

mRNA sequence

ATTTCGTCTTCCTCCTAATGCATCAGTACTGAGCAAAACACCATTTCTTCCTTTCTACCTTTCTCCCTTTTTCCTTCTTCTTCAATCTTCATATCTCCTTCCAAACTTCTCTACTCTAAACCCACGATCCCACGCCCTCTCCCCCGTAGTCTCCATCGCTCTCTCCCTTAAGATTTCCCGTTAAAGCTTCACCGCCACTCCATTAATTCTTCTCCACTTTCTGGTTGATGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATAAGTTGGAAAATGATGATGTTGAAATGGCCGATGTGGAGGAAGGGGAGTTCATTGACGACAATATCAATATAGAGAAAAGCAGTTTTACAGATGTCCAAGCACCAAGTACGGATCAGAGAAGTAAAAATCGTAAACATCGGACAAAGAAAAAGAAGAACAAAAGAAAGTCAAGCGAGCCAGGTTCAAATGGCACTGATATAAACAGGTTTGTGTTGAATGCATGCAGACTTTTGAAAGAGAAAAAATCGTACATGGTGTACACTGCTGTAGGTTGTCTTGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAAGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTACAAAGAGATAATGAAACGTGCAAAAGAGTTTGAGAAACAATTTAAGCAACCAAATGTGAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTTTTCTCTGAAGGATCTTCTAGAAATCTGCCAGATCACGTCCAAAGCTTTTCTTCAGAGCTGAATCAATCTAAGGAATCAAATTCCGAAGAAAAACTGTCTTCTATTCACGATAGATTAAGAGTACCAGTTTCATATGATGATGACCTCCTTCAAGAAAATCCGAAAGAGGAAGATACAACTGACTGTAGATAGGTTTTCCCATTTTTTTGAACAATTGCTGTTGGTTTTTAGTTCGTGTCTAACCAAATCAACAGTTTTTACCTCCAAAACATGAGGCAGAAGAATGTTCTATAAGCTGAGTTTGTTACTTTCATTTTCAGTGCCTTTTTGTTTTAGGCTGCTTTGGTTGAGTGCCTGCTTGTTCAGATGAGGTTGGAATTAGCCACATGGAAACAAATTGGATTTATTGGTTGTAAATGGGAAAAGATTTTGCAATGTTCCTCGTGCTCTGCTGTCATTTGAAACGATTTGAGAGAGAATAAATTTTTAAAAATTGTCTTTAGAGAAAAAAA

Coding sequence (CDS)

ATGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATAAGTTGGAAAATGATGATGTTGAAATGGCCGATGTGGAGGAAGGGGAGTTCATTGACGACAATATCAATATAGAGAAAAGCAGTTTTACAGATGTCCAAGCACCAAGTACGGATCAGAGAAGTAAAAATCGTAAACATCGGACAAAGAAAAAGAAGAACAAAAGAAAGTCAAGCGAGCCAGGTTCAAATGGCACTGATATAAACAGGTTTGTGTTGAATGCATGCAGACTTTTGAAAGAGAAAAAATCGTACATGGTGTACACTGCTGTAGGTTGTCTTGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAAGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTACAAAGAGATAATGAAACGTGCAAAAGAGTTTGAGAAACAATTTAAGCAACCAAATGTGAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTTTTCTCTGAAGGATCTTCTAGAAATCTGCCAGATCACGTCCAAAGCTTTTCTTCAGAGCTGAATCAATCTAAGGAATCAAATTCCGAAGAAAAACTGTCTTCTATTCACGATAGATTAAGAGTACCAGTTTCATATGATGATGACCTCCTTCAAGAAAATCCGAAAGAGGAAGATACAACTGACTGTAGATAG

Protein sequence

MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR

Homology

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BLAST of CsGy6G005730 vs. NCBI nr
Match: XP_004144996.1 (PREDICTED: uncharacterized protein LOC101205280 [Cucumis sativus] >KGN46229.1 hypothetical protein Csa_6G076770 [Cucumis sativus])

HSP 1 Score: 445.7 bits (1145), Expect = 1.1e-121
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXX 60
           MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXX
Sbjct: 1   MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELI 120
           XXXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELI
Sbjct: 61  XXXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELI 120

Query: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRR 180
           KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRR
Sbjct: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRR 180

Query: 181 EATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVS 240
           EATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVS
Sbjct: 181 EATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVS 240

Query: 241 YDDDLLQENPKEEDTTDCR 260
           YDDDLLQENPKEEDTTDCR
Sbjct: 241 YDDDLLQENPKEEDTTDCR 259

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BLAST of CsGy6G005730 vs. NCBI nr
Match: XP_008460135.1 (PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo])

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 238/254 (93.70%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXXXXX 63
           MDGQENILEAIYE D+ ENDDVEMADVEEGEFID NINIEKSSFTDVQAPST  XXXXXX
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQXXXXXX 60

Query: 64  XXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123
           XXXXXXXXXXXXXX GSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLGVSALSELIKEV
Sbjct: 61  XXXXXXXXXXXXXXPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA 
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAR 180

Query: 184 ETEKESSQKVPHLFSE-GSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 243
           ETEKESSQKVPHLFSE GSSRNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 244 DDLLQENPKEEDTT 257
           DDLLQENPKEEDTT
Sbjct: 241 DDLLQENPKEEDTT 254

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BLAST of CsGy6G005730 vs. NCBI nr
Match: XP_023547831.1 (uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 301.6 bits (771), Expect = 2.6e-78
Identity = 190/253 (75.10%), Postives = 203/253 (80.24%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXXXXX 63
           MDGQENILEAIYE+D                                     XXXXXXXX
Sbjct: 1   MDGQENILEAIYEEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 64  XXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123
           XXXXXXXXXXXXX  GSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLGVSALSELIKEV
Sbjct: 61  XXXXXXXXXXXXXESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 184 ETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDD 243
           E  K SSQ+V HLFSEG+S++ PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYDD
Sbjct: 181 EIGKASSQEVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 244 DLLQENPKEEDTT 257
           D+L+ENPKEEDTT
Sbjct: 241 DILRENPKEEDTT 253

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BLAST of CsGy6G005730 vs. NCBI nr
Match: XP_022959193.1 (uncharacterized protein LOC111460255 [Cucurbita moschata])

HSP 1 Score: 299.3 bits (765), Expect = 1.3e-77
Identity = 189/253 (74.70%), Postives = 202/253 (79.84%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXXXXX 63
           MDGQENILEAIYE+D                                     XXXXXXXX
Sbjct: 1   MDGQENILEAIYEEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 64  XXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123
           XXXXXXXXXXXXX  GSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLGVSALSELIKEV
Sbjct: 61  XXXXXXXXXXXXXESGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREAT
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAT 180

Query: 184 ETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDD 243
           E  K SSQ V HLFSEG+S++ PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYDD
Sbjct: 181 EIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYDD 240

Query: 244 DLLQENPKEEDTT 257
           D+L+ENPKEEDT+
Sbjct: 241 DILRENPKEEDTS 253

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BLAST of CsGy6G005730 vs. NCBI nr
Match: XP_022153361.1 (uncharacterized protein LOC111020873 [Momordica charantia])

HSP 1 Score: 294.7 bits (753), Expect = 3.1e-76
Identity = 187/256 (73.05%), Postives = 202/256 (78.91%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNI--NIEKSSFTDVQAPSTXXXXXX 63
           MDGQEN+L+AIYEDD                    N+  + E SS TDV APS     XX
Sbjct: 1   MDGQENVLDAIYEDDDXXXXXXXXXXXXXXXXXXXNVPHDTETSSLTDVHAPSIDHKSXX 60

Query: 64  XXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIK 123
           XXXXXXXXXXXXXXXXX   GTDINRFVL+ CR LKEKKSYMVYTAVGCLGVSALSELI 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXGTDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSELIN 120

Query: 124 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRRE 183
           EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+R E
Sbjct: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNLRGE 180

Query: 184 ATETEKESSQKV-PHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVS 243
           AT TEKE+S+KV PH+FS+GSSR+ P   QSF+ E NQSK+ NSEE   S+HDR+RVPVS
Sbjct: 181 ATGTEKENSEKVLPHIFSDGSSRDQPGIAQSFTPEQNQSKQPNSEENRLSVHDRIRVPVS 240

Query: 244 YDDDLLQENPKEEDTT 257
           YDDDLL EN  EED T
Sbjct: 241 YDDDLLGENLNEEDMT 256

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BLAST of CsGy6G005730 vs. TAIR10
Match: AT3G20430.1 (Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385))

HSP 1 Score: 171.8 bits (434), Expect = 5.6e-43
Identity = 122/264 (46.21%), Postives = 167/264 (63.26%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLEN-DDVEMADVEEGEFIDDN-------INIEKSSFTDVQA-PS 63
           M+G+E++L+AI E+D  EN +DVEM DVEEGE + D+        N +     D +A   
Sbjct: 1   MEGEESLLDAINEEDGFENLEDVEMVDVEEGEIVVDHDLDSGERQNDDGDGVKDKEAILG 60

Query: 64  TXXXXXXXXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVS 123
                    XXXXXXXXXXXX         ++ FV + CR LKEKKSYM+YTAVGCLG++
Sbjct: 61  EKNGLQQTNXXXXXXXXXXXXGPVMDKPMSVDWFVRDTCRRLKEKKSYMIYTAVGCLGIA 120

Query: 124 ALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK 183
           ALS+L+ EV A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEFEKQF+
Sbjct: 121 ALSDLVNEVVAIETCGGQVTADGTRKRTSGGVLWNIIKARQPEAYREIMKKTKEFEKQFR 180

Query: 184 QPNVRREATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSEL-----NQSKESNSEEKLS 243
           QPN R ++     + S       SEG +       ++  SE+      +  ES  E++  
Sbjct: 181 QPNTRPKSGPKRDQGSS------SEGLASGNVSADEALVSEMCVMPVAEQTESKPEKERK 240

Query: 244 SIHDRLRVPVSYDDDLLQENPKEE 254
           S+H+R+RVPVSY DDL ++ P ++
Sbjct: 241 SVHERIRVPVSY-DDLFRDAPLDD 257

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BLAST of CsGy6G005730 vs. TrEMBL
Match: tr|A0A0A0KBJ7|A0A0A0KBJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076770 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 7.3e-122
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXX 60
           MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXX
Sbjct: 1   MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELI 120
           XXXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELI
Sbjct: 61  XXXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELI 120

Query: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRR 180
           KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRR
Sbjct: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRR 180

Query: 181 EATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVS 240
           EATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVS
Sbjct: 181 EATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVS 240

Query: 241 YDDDLLQENPKEEDTTDCR 260
           YDDDLLQENPKEEDTTDCR
Sbjct: 241 YDDDLLQENPKEEDTTDCR 259

[Close]

BLAST of CsGy6G005730 vs. TrEMBL
Match: tr|A0A1S3CD38|A0A1S3CD38_CUCME (uncharacterized protein LOC103499036 OS=Cucumis melo OX=3656 GN=LOC103499036 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 8.4e-110
Identity = 238/254 (93.70%), Postives = 244/254 (96.06%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTXXXXXXXX 63
           MDGQENILEAIYE D+ ENDDVEMADVEEGEFID NINIEKSSFTDVQAPST  XXXXXX
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQXXXXXX 60

Query: 64  XXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123
           XXXXXXXXXXXXXX GSNGTDINRFVL+ACR LKEKKSYMVYTAVGCLGVSALSELIKEV
Sbjct: 61  XXXXXXXXXXXXXXPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA 
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAR 180

Query: 184 ETEKESSQKVPHLFSE-GSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 243
           ETEKESSQKVPHLFSE GSSRNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 244 DDLLQENPKEEDTT 257
           DDLLQENPKEEDTT
Sbjct: 241 DDLLQENPKEEDTT 254

[Close]

BLAST of CsGy6G005730 vs. TrEMBL
Match: tr|K7KI57|K7KI57_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100793038 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.5e-61
Identity = 153/254 (60.24%), Postives = 185/254 (72.83%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNIN--IEKSSFTDVQAPSTXXXXXX 63
           M+  +NIL+AIYE+D L+ DDV+M DVEEGE ++ +    + +SS  D+   +       
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDAQNVLGQSSAGDINEANQEPLSKN 60

Query: 64  XXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIK 123
             XXXXXXXXXXXXXXX  N  DINRFVL+ CR LKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QKXXXXXXXXXXXXXXXXXNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 124 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRRE 183
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+QPNV + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPNVMQR 180

Query: 184 ATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSY 243
               +++SSQ VP  FS     N+ D     S   NQ + + SEEK  S+HDRLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 244 DDDLLQENPKEEDT 256
           DDDLL ENP  + T
Sbjct: 241 DDDLLGENPVNDTT 253

[Close]

BLAST of CsGy6G005730 vs. TrEMBL
Match: tr|I1K8B7|I1K8B7_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100805103 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.6e-60
Identity = 156/254 (61.42%), Postives = 187/254 (73.62%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFID-DNINI-EKSSFTDVQAPSTXXXXXX 63
           M+  +NIL+AIYE+D L+ DDV+M DVEEGE ++ D+ N+  +SS  D+  P+       
Sbjct: 1   MEDGDNILDAIYEEDTLD-DDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKN 60

Query: 64  XXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIK 123
            XXXXXXXXXXXXXXXX SN  DINRFVL+ CR LKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QXXXXXXXXXXXXXXXXXSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 124 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRRE 183
           EV+A+Q CGGQ TADGRRFRTGGGILWSI+K REP  YKEI+K+AKEFEKQF+QPNV + 
Sbjct: 121 EVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQR 180

Query: 184 ATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSY 243
               +++SSQ VP  FS     N+ D     S   NQ + +  EEK  S HDRLR+PVSY
Sbjct: 181 PVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSY 240

Query: 244 DDDLLQENPKEEDT 256
           DDDLL ENP  + T
Sbjct: 241 DDDLLGENPINDAT 253

[Close]

BLAST of CsGy6G005730 vs. TrEMBL
Match: tr|A0A0B2RCT3|A0A0B2RCT3_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_035314 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.6e-60
Identity = 156/254 (61.42%), Postives = 187/254 (73.62%), Query Frame = 0


Query: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFID-DNINI-EKSSFTDVQAPSTXXXXXX 63
           M+  +NIL+AIYE+D L+ DDV+M DVEEGE ++ D+ N+  +SS  D+  P+       
Sbjct: 1   MEDGDNILDAIYEEDTLD-DDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKN 60

Query: 64  XXXXXXXXXXXXXXXXXGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIK 123
            XXXXXXXXXXXXXXXX SN  DINRFVL+ CR LKEKKSYMVYTAVGCLGVSALS+L+ 
Sbjct: 61  QXXXXXXXXXXXXXXXXXSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 124 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRRE 183
           EV+A+Q CGGQ TADGRRFRTGGGILWSI+K REP  YKEI+K+AKEFEKQF+QPNV + 
Sbjct: 121 EVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQR 180

Query: 184 ATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSY 243
               +++SSQ VP  FS     N+ D     S   NQ + +  EEK  S HDRLR+PVSY
Sbjct: 181 PVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSY 240

Query: 244 DDDLLQENPKEEDT 256
           DDDLL ENP  + T
Sbjct: 241 DDDLLGENPINDAT 253

The following BLAST results are available for this feature:

BLAST of CsGy6G005730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144996.1	1.1e-121	100.00	PREDICTED: uncharacterized protein LOC101205280 [Cucumis sativus] >KGN46229.1 hy...	[more]
XP_008460135.1	1.3e-109	93.70	PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo]	[more]
XP_023547831.1	2.6e-78	75.10	uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo]	[more]
XP_022959193.1	1.3e-77	74.70	uncharacterized protein LOC111460255 [Cucurbita moschata]	[more]
XP_022153361.1	3.1e-76	73.05	uncharacterized protein LOC111020873 [Momordica charantia]	[more]

BLAST of CsGy6G005730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20430.1	5.6e-43	46.21	Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR01938...	[more]

BLAST of CsGy6G005730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G005730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KBJ7\|A0A0A0KBJ7_CUCSA	7.3e-122	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G076770 PE=4 SV=1	[more]
tr\|A0A1S3CD38\|A0A1S3CD38_CUCME	8.4e-110	93.70	uncharacterized protein LOC103499036 OS=Cucumis melo OX=3656 GN=LOC103499036 PE=...	[more]
tr\|K7KI57\|K7KI57_SOYBN	5.5e-61	60.24	Uncharacterized protein OS=Glycine max OX=3847 GN=100793038 PE=4 SV=1	[more]
tr\|I1K8B7\|I1K8B7_SOYBN	3.6e-60	61.42	Uncharacterized protein OS=Glycine max OX=3847 GN=100805103 PE=4 SV=1	[more]
tr\|A0A0B2RCT3\|A0A0B2RCT3_GLYSO	3.6e-60	61.42	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_035314 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006408	snRNA export from nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR039047	PHAX
IPR019385	PHAX_RNA-binding_domain
IPR038092	PHAX_RNA-binding_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006408	snRNA export from nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G005730.1	CsGy6G005730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038092	Phosphorylated adapter RNA export protein, RNA-binding domain superfamily	GENE3D	G3DSA:1.10.10.1440		coord: 84..179 e-value: 2.0E-13 score: 52.1
IPR019385	Phosphorylated adapter RNA export protein, RNA-binding domain	PFAM	PF10258	RNA_GG_bind	coord: 92..167 e-value: 1.1E-22 score: 79.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..241
None	No IPR available	PANTHER	PTHR13135:SF2	SUBFAMILY NOT NAMED	coord: 4..249
IPR039047	Phosphorylated adapter RNA export protein	PANTHER	PTHR13135	CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26	coord: 4..249

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G005730	Cla006949	Watermelon (97103) v1	cgybwmB501
CsGy6G005730	Csa6G076770	Cucumber (Chinese Long) v2	cgybcuB282
CsGy6G005730	MELO3C022510	Melon (DHL92) v3.5.1	cgybmeB379
CsGy6G005730	ClCG06G000280	Watermelon (Charleston Gray)	cgybwcgB438
CsGy6G005730	CSPI06G05760	Wild cucumber (PI 183967)	cgybcpiB288
CsGy6G005730	CmaCh17G000240	Cucurbita maxima (Rimu)	cgybcmaB753
CsGy6G005730	CmoCh17G000250	Cucurbita moschata (Rifu)	cgybcmoB735
CsGy6G005730	Lsi09G019070	Bottle gourd (USVL1VR-Ls)	cgyblsiB366
CsGy6G005730	Cp4.1LG12g00220	Cucurbita pepo (Zucchini)	cgybcpeB723
CsGy6G005730	MELO3C022510.2	Melon (DHL92) v3.6.1	cgybmedB381
CsGy6G005730	CsaV3_6G006070	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G005730	Bhi12G002294	Wax gourd	cgybwgoB516
CsGy6G005730	Carg10209	Silver-seed gourd	carcgybB0248

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G005730	Cucumber (Gy14) v2	cgybcgybB101
CsGy6G005730	Cucurbita maxima (Rimu)	cgybcmaB736
CsGy6G005730	Cucurbita maxima (Rimu)	cgybcmaB749
CsGy6G005730	Cucurbita maxima (Rimu)	cgybcmaB864
CsGy6G005730	Cucurbita maxima (Rimu)	cgybcmaB853
CsGy6G005730	Cucurbita moschata (Rifu)	cgybcmoB717
CsGy6G005730	Cucurbita moschata (Rifu)	cgybcmoB731
CsGy6G005730	Cucurbita moschata (Rifu)	cgybcmoB846
CsGy6G005730	Cucurbita moschata (Rifu)	cgybcmoB834
CsGy6G005730	Cucurbita pepo (Zucchini)	cgybcpeB746
CsGy6G005730	Cucurbita pepo (Zucchini)	cgybcpeB785
CsGy6G005730	Cucurbita pepo (Zucchini)	cgybcpeB834
CsGy6G005730	Cucurbita pepo (Zucchini)	cgybcpeB889
CsGy6G005730	Cucumber (Chinese Long) v2	cgybcuB256
CsGy6G005730	Bottle gourd (USVL1VR-Ls)	cgyblsiB430
CsGy6G005730	Melon (DHL92) v3.5.1	cgybmeB435
CsGy6G005730	Melon (DHL92) v3.5.1	cgybmeB440
CsGy6G005730	Melon (DHL92) v3.6.1	cgybmedB430
CsGy6G005730	Melon (DHL92) v3.6.1	cgybmedB435
CsGy6G005730	Watermelon (Charleston Gray)	cgybwcgB431
CsGy6G005730	Watermelon (97103) v1	cgybwmB459
CsGy6G005730	Watermelon (97103) v1	cgybwmB465
CsGy6G005730	Wild cucumber (PI 183967)	cgybcpiB264
CsGy6G005730	Wild cucumber (PI 183967)	cgybcpiB275
CsGy6G005730	Silver-seed gourd	carcgybB0619
CsGy6G005730	Silver-seed gourd	carcgybB1061
CsGy6G005730	Cucumber (Chinese Long) v3	cgybcucB269
CsGy6G005730	Cucumber (Chinese Long) v3	cgybcucB281
CsGy6G005730	Watermelon (97103) v2	cgybwmbB437
CsGy6G005730	Watermelon (97103) v2	cgybwmbB443
CsGy6G005730	Watermelon (97103) v2	cgybwmbB446
CsGy6G005730	Wax gourd	cgybwgoB530