Cla006949 (gene) Watermelon (97103) v1

Overview
NameCla006949
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionMediator of U snRNA nuclear export PHAX (ISS) (AHRD V1 *-*- Q017X4_OSTTA); contains Interpro domain(s) IPR019385 Phosphorylated adapter RNA export protein, RNA-binding domain
LocationChr6 : 287626 .. 290102 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGACAAGAGAGCATACTTGAGGCCATATATGAAGATGATGACTTGGAAAAGGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATTGACAGCAATATCAATACAGAGAAAAGCGGTGTTACAGATCCCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTACGTGGAATTTGCTAATCATGTTGTATGCATGCAATTGCATGGAAAAAGAAGCAGCACTGCAAGCACACTTTCTTTAGATACCTTTCTTTTTTGTGTGGAAATCCATTTCAGTTTTGTGAAGTAAATAAATGGATATATTTAACAGAAGGAGTTTTTACTCTGGTTGCTATATTATGCTGATTTCTGTTTCTTTCAGGTTCGTGTTGGATGCATGTAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTATTATGATTTTCTTATATCCTGATAAAAGAATATTTTGTCTGGTTGAGTGATGAAAATCTCTGACCTATCCATTAGTATTAGTTCGAAAACTCCTTCTGTTCCTTAAAGTTTGTTTGAAAATGAACCGAATTGACTAGCCACTAACTAACCAAACCAACATAAACGAGTTTCATCTGTTTTTCCTTTTGGTTTGCATTCAGCCCCCTAGTGAGTACAACTCATGAATTTTTGCCAATGTGTGATATACCTTTGTTCAGTACTTTTCGTATCCTCAATACTTTTCGTGGGGCCACGAATGATTTTGCTGCCTTTCTGCTAAAAGTGAAAATCTTCAAACTTAATTTTTTGAGTTTTGACTGGCCTGCCTAAGCATGGCCATCCACTCCAGACTCCAGTAAGTATCATACCAAACAGTCACTCTTCATATTTAATCAGTATTATTTCCTACCCGTGCAGATTCTGTTGCTGAAGTCATTTTGCTCCTTTTAACCTTGTTCACTGAGCTGTGAACCACCATGGCTGGACTACTACATCTTCATCTGTGCTATATAAGTTGATGTTATTATCCCAGCATATATTGGTTATGATCTCTGTAAGATATTTGTACTTTATTACAGAAACTTTAGTATTGATCACAGTTCACGATCCCTATTTTCCATCCACTTCCCTGAAAATACTACTCCACCTGATTATTCTTACGGAATCTGGACTTCGTTGAAATGCTCTTGGAAGTTTTAAAACATACTTTTAACTGGATTGCCCAAACTAAAATATGAAGCTCAGTTGCGCATGTCCTATCATAATTTTCATCTTGGGGTTTGAGATTTGCTTTCATGTGAGCTCCTTAAGATCTGTTTTCACTTTTAAAAATTTATAACCGTTTATCAAATTCTTTATATGCAGAAGCCCTTGACTTGCTTTGCCCCTTTGAGTTACCGATGATGCTTAACTAGAGATAGGCAGCATACTTAATAGATGGTCGATCTGCTTGTAATTGTTTTAGCATTTCTCTTCTTTTACGATACGACACTGTATGATCTTATGTGCACAAGTTGCATGTCGGAATGCCAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGTTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGGTATCTTACAAAACCTTTTCTAAATAGTTTATAACTTGGAAAAGTTTAAGTGACTTATTCCTTTATTCTTACCAAATGAACTTAAAATGTTATCAATACTCCTAGTTGGACACTATTAAAAATTTTCATTGTCAGGGCCATCTTTCATCTTTTTGAATCTTTTATCTCATTCAGAGTGGCCTCAGTTTGCTAAGCCTGTATCTAACACTTCTCAAATTGCTGAGCTGATTTACTCTTCGGTTTTCTTTCTTCTTTTCTTTTGGGTTGTAATTGTATTTTGAAGAGTTGTGTTTTGAAATTCATTCTTGTGTTGGAATATGTGTCAAAGTCCAATTTCTTCTTATGATCCTATACATGAAGTTATTTCCTTTATCAGTTCTTTCTAATTTGGTAGCATGAATGATAATTATACACGTTTTTGTTTATTTCATGATGGTGCAGAAACAATTTAAGCCACCAAATATTAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTGTTCTGTAAAGGATCTTCAGGAGATCAACTGGACTGCATCCAAAGCTTTATTCCGGAGCAGAATCAATATAAAGAATCAAATTCCGAAGAAAAACGATCTTCTATTCACAATAGATTAAGAGTACCAGTTTCATATGATGATGACATCCTTCAAGGGAATCCGAAAGAGGAAGATGCGACTTGA

mRNA sequence

ATGGATGGACAAGAGAGCATACTTGAGGCCATATATGAAGATGATGACTTGGAAAAGGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATTGACAGCAATATCAATACAGAGAAAAGCGGTGTTACAGATCCCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTCGTGTTGGATGCATGTAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGTTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGAAACAATTTAAGCCACCAAATATTAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTGTTCTGTAAAGGATCTTCAGGAGATCAACTGGACTGCATCCAAAGCTTTATTCCGGAGCAGAATCAATATAAAGAATCAAATTCCGAAGAAAAACGATCTTCTATTCACAATAGATTAAGAGTACCAGTTTCATATGATGATGACATCCTTCAAGGGAATCCGAAAGAGGAAGATGCGACTTGA

Coding sequence (CDS)

ATGGATGGACAAGAGAGCATACTTGAGGCCATATATGAAGATGATGACTTGGAAAAGGATGATGTTGAAATGGTTGATGTGGAAGAAGGAGAGTTCATTGACAGCAATATCAATACAGAGAAAAGCGGTGTTACAGATCCCCAAGCACCAAGTATAGATCAGAGAAGTAAAAATCGTAAACGTCGGACAAAGAAAAAGAAGAACAAAAGAAAGGCATGCGAGTCAGGTTCAAATGGCACTGATATTAACAGGTTCGTGTTGGATGCATGTAGACGTTTGAAAGAGAAAAAGTCATACATGATGTACACTGCTGTAGGTTGTCTGGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAGGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGTTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTATAAAGAGATTATGAAACGAGCAAAAGAGTTTGAGAAACAATTTAAGCCACCAAATATTAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTGTTCTGTAAAGGATCTTCAGGAGATCAACTGGACTGCATCCAAAGCTTTATTCCGGAGCAGAATCAATATAAAGAATCAAATTCCGAAGAAAAACGATCTTCTATTCACAATAGATTAAGAGTACCAGTTTCATATGATGATGACATCCTTCAAGGGAATCCGAAAGAGGAAGATGCGACTTGA

Protein sequence

MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDPQAPSIDQRSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSYDDDILQGNPKEEDAT
Homology
[Close]
BLAST of Cla006949 vs. TrEMBL
Match: A0A0A0KBJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076770 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 6.4e-117
Identity = 217/253 (85.77%), Postives = 227/253 (89.72%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDPQAPSIDQRSKNRK 60
           MDGQE+ILEAIYEDD LE DDVEM DVEEGEFID NIN EKS  TD QAPS DQRSKNRK
Sbjct: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRK 63

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
            RTKKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 64  HRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PN+RREAT
Sbjct: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSYDD 240
           ETEKESSQKVPHLF +GSS +  D +QSF  E NQ KESNSEEK SSIH+RLRVPVSYDD
Sbjct: 184 ETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDD 243

Query: 241 DILQGNPKEEDAT 254
           D+LQ NPKEED T
Sbjct: 244 DLLQENPKEEDTT 256

[Close]
BLAST of Cla006949 vs. TrEMBL
Match: W9S447_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021935 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.7e-75
Identity = 148/255 (58.04%), Postives = 189/255 (74.12%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKD-DVEMVDVEEGEFIDSNINTE--KSGVTDPQAPSIDQRSK 60
           M+G ESIL+A+ E+D+ E D D+EMVDVEEGE ++ N+  +  +S   +    + + +SK
Sbjct: 1   MEGGESILDALNEEDNFEYDEDIEMVDVEEGELVEENLRNDLGQSNAGEVNVNNQESQSK 60

Query: 61  NRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELI 120
           NRKRR  KKKNKRK      N TDINRFVLD CRRLKEKKSYM+YTAVGCLG+SAL +LI
Sbjct: 61  NRKRRANKKKNKRKRSGPDPNVTDINRFVLDTCRRLKEKKSYMVYTAVGCLGISALCDLI 120

Query: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRR 180
           KEV+AVQACGGQMTADGRRFRTGGGILWSI+K REP AYKE+M +AKEFEKQFK P  ++
Sbjct: 121 KEVDAVQACGGQMTADGRRFRTGGGILWSIVKAREPKAYKEMMNKAKEFEKQFKLPYSKQ 180

Query: 181 EATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVS 240
              + +  SS+ V      G++ +  + +Q     QNQ ++SN EE R S+ +RLR+PVS
Sbjct: 181 ARRQRKDGSSENVTDAPMNGTTSNVSNALQVQSEVQNQNEQSNDEENRVSVGDRLRIPVS 240

Query: 241 YDDDILQGNPKEEDA 253
           YDDD+L G+PK++ A
Sbjct: 241 YDDDLLGGDPKDDTA 255

[Close]
BLAST of Cla006949 vs. TrEMBL
Match: K7KI57_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G049800 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 5.1e-74
Identity = 146/249 (58.63%), Postives = 184/249 (73.90%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTE--KSGVTDPQAPSIDQRSKN 60
           M+  ++IL+AIYE+D+L+ DDV+MVDVEEGE ++ +      +S   D    + +  SKN
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDAQNVLGQSSAGDINEANQEPLSKN 60

Query: 61  RKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIK 120
           +KRR  KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYM+YTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRRE 180
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+ PN+ + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPNVMQR 180

Query: 181 ATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSY 240
               +++SSQ VP  F     G+  D        QNQ++ + SEEK  S+H+RLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 241 DDDILQGNP 248
           DDD+L  NP
Sbjct: 241 DDDLLGENP 248

[Close]
BLAST of Cla006949 vs. TrEMBL
Match: A0A0B2RCY1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016360 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.5e-73
Identity = 147/249 (59.04%), Postives = 183/249 (73.49%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFI--DSNINTEKSGVTDPQAPSIDQRSKN 60
           M+  ++IL+AIYE+D+L+ DDV+MVDVEEGE +  DS     +S   D    + +  SKN
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDSQNVLGQSSAGDINEANQEPLSKN 60

Query: 61  RKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIK 120
           +KRR  KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYM+YTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRRE 180
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+ P + + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPTVMQR 180

Query: 181 ATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSY 240
               +++SSQ VP  F     G+  D        QNQ++ + SEEK  S+H+RLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 241 DDDILQGNP 248
           DDD+L  NP
Sbjct: 241 DDDLLGENP 248

[Close]
BLAST of Cla006949 vs. TrEMBL
Match: A0A0B2RCT3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_035314 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 7.4e-73
Identity = 147/249 (59.04%), Postives = 181/249 (72.69%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFI--DSNINTEKSGVTDPQAPSIDQRSKN 60
           M+  ++IL+AIYE+D L+ DDV+MVDVEEGE +  DS     +S   D   P+ +  SKN
Sbjct: 1   MEDGDNILDAIYEEDTLD-DDVDMVDVEEGELVEPDSQNVLGQSSAGDINEPNQEPLSKN 60

Query: 61  RKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIK 120
           +KRR  KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYM+YTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRRE 180
           EV+A+Q CGGQ TADGRRFRTGGGILWSI+K REP  YKEI+K+AKEFEKQF+ PN+ + 
Sbjct: 121 EVDAIQTCGGQKTADGRRFRTGGGILWSILKVREPKVYKEIIKKAKEFEKQFRQPNVMQR 180

Query: 181 ATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSY 240
               +++SSQ VP  F     G+  D        QNQ++ +  EEK  S H+RLR+PVSY
Sbjct: 181 PVPKKEDSSQGVPVSFSGRDLGNVSDSNILASQMQNQHQPATLEEKPVSAHDRLRIPVSY 240

Query: 241 DDDILQGNP 248
           DDD+L  NP
Sbjct: 241 DDDLLGENP 248

[Close]
BLAST of Cla006949 vs. NCBI nr
Match: gi|449454508|ref|XP_004144996.1| (PREDICTED: uncharacterized protein LOC101205280 [Cucumis sativus])

HSP 1 Score: 428.3 bits (1100), Expect = 9.2e-117
Identity = 217/253 (85.77%), Postives = 227/253 (89.72%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDPQAPSIDQRSKNRK 60
           MDGQE+ILEAIYEDD LE DDVEM DVEEGEFID NIN EKS  TD QAPS DQRSKNRK
Sbjct: 4   MDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRK 63

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
            RTKKKKNKRK+ E GSNGTDINRFVL+ACR LKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 64  HRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEV 123

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PN+RREAT
Sbjct: 124 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREAT 183

Query: 181 ETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSYDD 240
           ETEKESSQKVPHLF +GSS +  D +QSF  E NQ KESNSEEK SSIH+RLRVPVSYDD
Sbjct: 184 ETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDD 243

Query: 241 DILQGNPKEEDAT 254
           D+LQ NPKEED T
Sbjct: 244 DLLQENPKEEDTT 256

[Close]
BLAST of Cla006949 vs. NCBI nr
Match: gi|659120327|ref|XP_008460135.1| (PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo])

HSP 1 Score: 427.9 bits (1099), Expect = 1.2e-116
Identity = 217/254 (85.43%), Postives = 228/254 (89.76%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTEKSGVTDPQAPSIDQRSKNRK 60
           MDGQE+ILEAIYE D+ E DDVEM DVEEGEFID+NIN EKS  TD QAPS DQRSKNRK
Sbjct: 1   MDGQENILEAIYEADEFENDDVEMADVEEGEFIDANINIEKSSFTDVQAPSTDQRSKNRK 60

Query: 61  RRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIKEV 120
           RRTKKKKNKRK+ E GSNGTDINRFVLDACRRLKEKKSYM+YTAVGCLGVSALSELIKEV
Sbjct: 61  RRTKKKKNKRKSSEPGSNGTDINRFVLDACRRLKEKKSYMVYTAVGCLGVSALSELIKEV 120

Query: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRREAT 180
           NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFK PNIRREA 
Sbjct: 121 NAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREAR 180

Query: 181 ETEKESSQKVPHLFCKGSSGDQL-DCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSYD 240
           ETEKESSQKVPHLF +G S   L D +QSF  E N+ KESNSEEKRSSIH+RLRVP+SYD
Sbjct: 181 ETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISYD 240

Query: 241 DDILQGNPKEEDAT 254
           DD+LQ NPKEED T
Sbjct: 241 DDLLQENPKEEDTT 254

[Close]
BLAST of Cla006949 vs. NCBI nr
Match: gi|703151155|ref|XP_010110045.1| (hypothetical protein L484_021935 [Morus notabilis])

HSP 1 Score: 290.0 bits (741), Expect = 3.9e-75
Identity = 148/255 (58.04%), Postives = 189/255 (74.12%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKD-DVEMVDVEEGEFIDSNINTE--KSGVTDPQAPSIDQRSK 60
           M+G ESIL+A+ E+D+ E D D+EMVDVEEGE ++ N+  +  +S   +    + + +SK
Sbjct: 1   MEGGESILDALNEEDNFEYDEDIEMVDVEEGELVEENLRNDLGQSNAGEVNVNNQESQSK 60

Query: 61  NRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELI 120
           NRKRR  KKKNKRK      N TDINRFVLD CRRLKEKKSYM+YTAVGCLG+SAL +LI
Sbjct: 61  NRKRRANKKKNKRKRSGPDPNVTDINRFVLDTCRRLKEKKSYMVYTAVGCLGISALCDLI 120

Query: 121 KEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRR 180
           KEV+AVQACGGQMTADGRRFRTGGGILWSI+K REP AYKE+M +AKEFEKQFK P  ++
Sbjct: 121 KEVDAVQACGGQMTADGRRFRTGGGILWSIVKAREPKAYKEMMNKAKEFEKQFKLPYSKQ 180

Query: 181 EATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVS 240
              + +  SS+ V      G++ +  + +Q     QNQ ++SN EE R S+ +RLR+PVS
Sbjct: 181 ARRQRKDGSSENVTDAPMNGTTSNVSNALQVQSEVQNQNEQSNDEENRVSVGDRLRIPVS 240

Query: 241 YDDDILQGNPKEEDA 253
           YDDD+L G+PK++ A
Sbjct: 241 YDDDLLGGDPKDDTA 255

[Close]
BLAST of Cla006949 vs. NCBI nr
Match: gi|1009132935|ref|XP_015883637.1| (PREDICTED: uncharacterized protein LOC107419382 [Ziziphus jujuba])

HSP 1 Score: 286.2 bits (731), Expect = 5.6e-74
Identity = 150/258 (58.14%), Postives = 189/258 (73.26%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKD-DVEMVDVEEGEFIDSNINT-----EKSGVTDPQAPSIDQ 60
           M+G +SIL+A+YE+D+ E D DVEM+DVEEGE ++ N  T     +  G  D      + 
Sbjct: 1   MEGGDSILDALYEEDNFEGDEDVEMLDVEEGELVEHNSQTASDQIKSKGSEDVNVIDQES 60

Query: 61  RSKNRKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALS 120
           RSKNRKRR  +KKNKRK      N TDINRFVLD C+RLKEKKSYM+YTAVGCLG+SAL 
Sbjct: 61  RSKNRKRRPNRKKNKRKRSGLDPNVTDINRFVLDTCKRLKEKKSYMVYTAVGCLGISALC 120

Query: 121 ELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPN 180
           +L+KEV+ +Q+CGGQMTADGRR RTGGGILW+IIK REPNAYKEIM++ KEFEKQFK PN
Sbjct: 121 DLVKEVDVIQSCGGQMTADGRRSRTGGGILWNIIKAREPNAYKEIMRKTKEFEKQFKRPN 180

Query: 181 IRREATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRV 240
           IR+E  + ++ SSQK+     +GS   + +        Q+Q ++SN E KR S+H+RLR+
Sbjct: 181 IRQETEQGKEVSSQKI----AEGSMDLKSEM-------QHQSQQSNDEGKRVSVHDRLRM 240

Query: 241 PVSYDDDILQGNPKEEDA 253
           PVSYDDDIL G   ++DA
Sbjct: 241 PVSYDDDILGGGQPKDDA 247

[Close]
BLAST of Cla006949 vs. NCBI nr
Match: gi|356509811|ref|XP_003523639.1| (PREDICTED: uncharacterized protein LOC100793038 [Glycine max])

HSP 1 Score: 285.8 bits (730), Expect = 7.3e-74
Identity = 146/249 (58.63%), Postives = 184/249 (73.90%), Query Frame = 1 

Query: 1   MDGQESILEAIYEDDDLEKDDVEMVDVEEGEFIDSNINTE--KSGVTDPQAPSIDQRSKN 60
           M+  ++IL+AIYE+D+L+ DDV+MVDVEEGE ++ +      +S   D    + +  SKN
Sbjct: 1   MEDGDNILDAIYEEDNLD-DDVDMVDVEEGELVEPDAQNVLGQSSAGDINEANQEPLSKN 60

Query: 61  RKRRTKKKKNKRKACESGSNGTDINRFVLDACRRLKEKKSYMMYTAVGCLGVSALSELIK 120
           +KRR  KKKNK+K   SGSN  DINRFVLD CRRLKEKKSYM+YTAVGCLGVSALS+L+ 
Sbjct: 61  QKRRANKKKNKKKRKGSGSNAMDINRFVLDTCRRLKEKKSYMVYTAVGCLGVSALSDLVN 120

Query: 121 EVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKPPNIRRE 180
           EV+A+QACGGQ TADGRRFRTGGGILWSI+K REP  +KEIMK+AKEFEKQF+ PN+ + 
Sbjct: 121 EVDAIQACGGQKTADGRRFRTGGGILWSILKVREPKVFKEIMKKAKEFEKQFRQPNVMQR 180

Query: 181 ATETEKESSQKVPHLFCKGSSGDQLDCIQSFIPEQNQYKESNSEEKRSSIHNRLRVPVSY 240
               +++SSQ VP  F     G+  D        QNQ++ + SEEK  S+H+RLR+PVSY
Sbjct: 181 PASKKEDSSQGVPFSFSGRDLGNVSDSDILASQMQNQHQPATSEEKPMSVHDRLRIPVSY 240

Query: 241 DDDILQGNP 248
           DDD+L  NP
Sbjct: 241 DDDLLGENP 248

The following BLAST results are available for this feature:
BLAST of Cla006949 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBJ7_CUCSA6.4e-11785.77Uncharacterized protein OS=Cucumis sativus GN=Csa_6G076770 PE=4 SV=1[more]
W9S447_9ROSA2.7e-7558.04Uncharacterized protein OS=Morus notabilis GN=L484_021935 PE=4 SV=1[more]
K7KI57_SOYBN5.1e-7458.63Uncharacterized protein OS=Glycine max GN=GLYMA_04G049800 PE=4 SV=1[more]
A0A0B2RCY1_GLYSO1.5e-7359.04Uncharacterized protein OS=Glycine soja GN=glysoja_016360 PE=4 SV=1[more]
A0A0B2RCT3_GLYSO7.4e-7359.04Uncharacterized protein OS=Glycine soja GN=glysoja_035314 PE=4 SV=1[more]
BLAST of Cla006949 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449454508|ref|XP_004144996.1|9.2e-11785.77PREDICTED: uncharacterized protein LOC101205280 [Cucumis sativus][more]
gi|659120327|ref|XP_008460135.1|1.2e-11685.43PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo][more]
gi|703151155|ref|XP_010110045.1|3.9e-7558.04hypothetical protein L484_021935 [Morus notabilis][more]
gi|1009132935|ref|XP_015883637.1|5.6e-7458.14PREDICTED: uncharacterized protein LOC107419382 [Ziziphus jujuba][more]
gi|356509811|ref|XP_003523639.1|7.3e-7458.63PREDICTED: uncharacterized protein LOC100793038 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019385PHAX_RNA-binding_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006408 snRNA export from nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006949Cla006949.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019385Phosphorylated adapter RNA export protein, RNA-binding domainPFAMPF10258RNA_GG_bindcoord: 88..164
score: 1.8
NoneNo IPR availablePANTHERPTHR13135CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26coord: 5..253
score: 8.4
NoneNo IPR availablePANTHERPTHR13135:SF0PHOSPHORYLATED ADAPTER RNA EXPORT PROTEINcoord: 5..253
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006949Csa6G076770Cucumber (Chinese Long) v2cuwmB537
Cla006949MELO3C022510Melon (DHL92) v3.5.1mewmB140
Cla006949ClCG06G000280Watermelon (Charleston Gray)wcgwmB345
Cla006949CSPI06G05760Wild cucumber (PI 183967)cpiwmB556
Cla006949Cucsa.362900Cucumber (Gy14) v1cgywmB666
Cla006949CmaCh17G000240Cucurbita maxima (Rimu)cmawmB353
Cla006949CmoCh17G000250Cucurbita moschata (Rifu)cmowmB348
Cla006949Lsi09G019070Bottle gourd (USVL1VR-Ls)lsiwmB041
Cla006949Cp4.1LG12g00220Cucurbita pepo (Zucchini)cpewmB157
Cla006949CsGy6G005730Cucumber (Gy14) v2cgybwmB501
Cla006949MELO3C022510.2Melon (DHL92) v3.6.1medwmB138
Cla006949Carg10209Silver-seed gourdcarwmB0221
Cla006949CsaV3_6G006070Cucumber (Chinese Long) v3cucwmB562
Cla006949Bhi12G002294Wax gourdwgowmB099
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006949Wax gourdwgowmB162
Cla006949Watermelon (97103) v1wmwmB137
Cla006949Watermelon (97103) v1wmwmB140
Cla006949Cucumber (Gy14) v1cgywmB484
Cla006949Cucurbita maxima (Rimu)cmawmB251
Cla006949Cucurbita maxima (Rimu)cmawmB326
Cla006949Cucurbita maxima (Rimu)cmawmB810
Cla006949Cucurbita maxima (Rimu)cmawmB874
Cla006949Cucurbita moschata (Rifu)cmowmB241
Cla006949Cucurbita moschata (Rifu)cmowmB320
Cla006949Cucurbita moschata (Rifu)cmowmB801
Cla006949Cucurbita moschata (Rifu)cmowmB862
Cla006949Melon (DHL92) v3.5.1mewmB484
Cla006949Melon (DHL92) v3.5.1mewmB488
Cla006949Watermelon (Charleston Gray)wcgwmB309
Cla006949Watermelon (Charleston Gray)wcgwmB314
Cla006949Cucumber (Chinese Long) v2cuwmB276
Cla006949Cucurbita pepo (Zucchini)cpewmB342
Cla006949Cucurbita pepo (Zucchini)cpewmB625
Cla006949Cucurbita pepo (Zucchini)cpewmB854
Cla006949Bottle gourd (USVL1VR-Ls)lsiwmB385
Cla006949Cucumber (Gy14) v2cgybwmB259
Cla006949Melon (DHL92) v3.6.1medwmB473
Cla006949Silver-seed gourdcarwmB0619
Cla006949Silver-seed gourdcarwmB1079
Cla006949Cucumber (Chinese Long) v3cucwmB285
Cla006949Cucumber (Chinese Long) v3cucwmB291
Cla006949Watermelon (97103) v2wmwmbB398
Cla006949Watermelon (97103) v2wmwmbB405
Cla006949Watermelon (97103) v2wmwmbB407