CmoCh16G011510 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G011510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	Cmo_Chr16 : 8217453 .. 8218103 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGGCCAAAGGGCGTTTGTTTGAGTCAGGACTTTTATCAAACAGATGGTGGGCATGGGCATTGGCATGAGGCGTTGGGGCTTGGTGCTGGCAGTGGCGGTGGTTATGGCGGTGGCAGTAGGGGAGGTGGCGGCACTGACGGCGGCGCAGTGTAAGGCGGAGAGAGATATGGCGGTGAAAGAGTGCCTGCCGGTGGTGTTCGGGAGTAACCCGTCGCCGGCGTGCTGCCAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCGGCTGTTACGCCTAAGCTGATGACATACGTGGACCCTAATCGCGCCATTCGCCTCATCGAAAGCTGCGGCCGTAAGGTCCCCCGCCATTTCAAATGTGGAAGTAATTAAATTAACCCCTCTCTCTACATATATATACACATATACATATACATACATAATACATACATATATATGTATATAATCATTTAATTTTCCAAAAATTAACATATTTATTTTTTTCATTATTCATTTTTGTTCAGGGATTTTTTTTTCATCTTTCATAAATATTCCAAAAATATATATATATATATTAAATTATAAAAAATAAATATCTCAAAATCATTCGAATTATTTCAAATCTTATAATTATTTTTTAGTATAGAGAATTTTAGAATTTCGAATTAA

mRNA sequence

TAAGGCCAAAGGGCGTTTGTTTGAGTCAGGACTTTTATCAAACAGATGGTGGGCATGGGCATTGGCATGAGGCGTTGGGGCTTGGTGCTGGCAGTGGCGGTGGTTATGGCGGTGGCAGTAGGGGAGGTGGCGGCACTGACGGCGGCGCAGTGTAAGGCGGAGAGAGATATGGCGGTGAAAGAGTGCCTGCCGGTGGTGTTCGGGAGTAACCCGTCGCCGGCGTGCTGCCAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCGGCTGTTACGCCTAAGCTGATGACATACGTGGACCCTAATCGCGCCATTCGCCTCATCGAAAGCTGCGGCCAGAATTTTAGAATTTCGAATTAA

Coding sequence (CDS)

ATGGTGGGCATGGGCATTGGCATGAGGCGTTGGGGCTTGGTGCTGGCAGTGGCGGTGGTTATGGCGGTGGCAGTAGGGGAGGTGGCGGCACTGACGGCGGCGCAGTGTAAGGCGGAGAGAGATATGGCGGTGAAAGAGTGCCTGCCGGTGGTGTTCGGGAGTAACCCGTCGCCGGCGTGCTGCCAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCGGCTGTTACGCCTAAGCTGATGACATACGTGGACCCTAATCGCGCCATTCGCCTCATCGAAAGCTGCGGCCAGAATTTTAGAATTTCGAATTAA

Homology

[Close]

BLAST of CmoCh16G011510 vs. TrEMBL
Match: A0A0A0L677_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.6e-34
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 1  MVGMGIGMRRWGLVLAVAVVMAVAVGEVAALTAAQCKAERDMAVKECLPVVFGSNPSPAC 60
          MVG+ I M RWGLV+AV  +MA+AVGEVAALTAA+C+AERDMAV  C  V+FG NPSPAC
Sbjct: 1  MVGI-IKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPAC 60

Query: 61 CQRARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          CQRARVSHT CICPAVTPKLMTYVDP RAIRLIESCG+
Sbjct: 61 CQRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGR 97

[Close]

BLAST of CmoCh16G011510 vs. TrEMBL
Match: A0A0A0L5D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.6e-34
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 4  MGIGMRRWGLVLAVAVVMAVAVGEVAALTAAQCKAERDMAVKECLPVVFGSNPSPACCQR 63
          +GI   RWGLV+ V  VMA+ VGEV ALTAA+CK ERDMAV+ECL VVFG NPSPACC+R
Sbjct: 2  VGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCER 61

Query: 64 ARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          ARVSHTECIC AVTPKLMTYVDP+RAIRLI+SCG+
Sbjct: 62 ARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGR 96

[Close]

BLAST of CmoCh16G011510 vs. TrEMBL
Match: F6H7X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.8e-21
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 7  GMRRWGLVLAVAVVMAVAVGEV----AALTAAQCKAERDMAVKECLPVVFGSNPSPACCQ 66
          G + WG V+ V VV+ + + EV    AA +AA+CK ER +A+  C PVV+G +PSPACC+
Sbjct: 3  GGKSWG-VMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCE 62

Query: 67 RARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          RARV+H EC+CP +TPKL   +D NRA+RLIE CG+
Sbjct: 63 RARVTHIECVCPVITPKLAALIDVNRAVRLIEGCGR 97

[Close]

BLAST of CmoCh16G011510 vs. TrEMBL
Match: F6H7Y2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 7.8e-21
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 7  GMRRWGLVLAVAVVMAVAVGEV----AALTAAQCKAERDMAVKECLPVVFGSNPSPACCQ 66
          G + WG V+ V VV+ + + EV    AA +AA+CK ER +A+  C PVV+G +PSPACC+
Sbjct: 3  GGKSWG-VMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCE 62

Query: 67 RARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          RARV+H EC+CP +TPKL   +D NRA+RLIE CG+
Sbjct: 63 RARVTHIECVCPVITPKLAALIDVNRAVRLIEGCGR 97

[Close]

BLAST of CmoCh16G011510 vs. TrEMBL
Match: F6H7X9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00030 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 48/96 (50.00%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 7  GMRRWGLVLAVAVVMAVAVGEV----AALTAAQCKAERDMAVKECLPVVFGSNPSPACCQ 66
          G +  G+++ + VV+ V + EV    AA +AA+CK E  +A+K C PVV+G +PSPACC+
Sbjct: 3  GGKSCGVMVVLVVVLVVGMWEVKTSSAAPSAAECKEETRLAIKACKPVVYGMDPSPACCE 62

Query: 67 RARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          RARV+H EC+CP +TPKL   +D N+A+R+IE CG+
Sbjct: 63 RARVTHVECVCPLITPKLAALIDVNKAVRVIEGCGR 98

[Close]

BLAST of CmoCh16G011510 vs. NCBI nr
Match: gi|659096493|ref|XP_008449126.1| (PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo])

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-34
Identity = 77/94 (81.91%), Postives = 85/94 (90.43%), Query Frame = 1


Query: 6  IGMRRWGLVLAV-AVVMAVAVGEVAALTAAQCKAERDMAVKECLPVVFGSNPSPACCQRA 65
          I M RWGLV+AV A++MA+AVGEVAALTAA+C+AERDMAV  C  V+FG NPSPACCQRA
Sbjct: 5  IRMGRWGLVMAVVAIIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACCQRA 64

Query: 66 RVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          RVSHTECICPAVTPKLMTYVDP RAIRLIESCG+
Sbjct: 65 RVSHTECICPAVTPKLMTYVDPIRAIRLIESCGR 98

[Close]

BLAST of CmoCh16G011510 vs. NCBI nr
Match: gi|778675994|ref|XP_011650514.1| (PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 5.2e-34
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 1  MVGMGIGMRRWGLVLAVAVVMAVAVGEVAALTAAQCKAERDMAVKECLPVVFGSNPSPAC 60
          MVG+ I M RWGLV+AV  +MA+AVGEVAALTAA+C+AERDMAV  C  V+FG NPSPAC
Sbjct: 1  MVGI-IKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPAC 60

Query: 61 CQRARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          CQRARVSHT CICPAVTPKLMTYVDP RAIRLIESCG+
Sbjct: 61 CQRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGR 97

[Close]

BLAST of CmoCh16G011510 vs. NCBI nr
Match: gi|449459012|ref|XP_004147240.1| (PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 5.2e-34
Identity = 74/95 (77.89%), Postives = 83/95 (87.37%), Query Frame = 1


Query: 4  MGIGMRRWGLVLAVAVVMAVAVGEVAALTAAQCKAERDMAVKECLPVVFGSNPSPACCQR 63
          +GI   RWGLV+ V  VMA+ VGEV ALTAA+CK ERDMAV+ECL VVFG NPSPACC+R
Sbjct: 2  VGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCER 61

Query: 64 ARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          ARVSHTECIC AVTPKLMTYVDP+RAIRLI+SCG+
Sbjct: 62 ARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGR 96

[Close]

BLAST of CmoCh16G011510 vs. NCBI nr
Match: gi|659095793|ref|XP_008448771.1| (PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-33
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 4  MGIGMRRWGLVLAVAV-VMAVAVGEVAALTAAQCKAERDMAVKECLPVVFGSNPSPACCQ 63
          +GI   RWGLV+ V + VMA+ VGEVAALTAA+CKAERDMAVK+CL VVFG NPSPACC+
Sbjct: 2  VGIREGRWGLVMGVVLAVMAMGVGEVAALTAAECKAERDMAVKKCLAVVFGRNPSPACCE 61

Query: 64 RARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          RARVSH ECICPAVT KLMTYVDP+RAIRLI+SCG+
Sbjct: 62 RARVSHAECICPAVTSKLMTYVDPSRAIRLIQSCGR 97

[Close]

BLAST of CmoCh16G011510 vs. NCBI nr
Match: gi|359474408|ref|XP_003631456.1| (PREDICTED: uncharacterized protein LOC100853134 [Vitis vinifera])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 52/96 (54.17%), Postives = 70/96 (72.92%), Query Frame = 1


Query: 7  GMRRWGLVLAVAVVMAVAVGEV----AALTAAQCKAERDMAVKECLPVVFGSNPSPACCQ 66
          G + WG V+ V VV+ + + EV    AA +AA+CK ER +A+  C PVV+G +PSPACC+
Sbjct: 3  GGKSWG-VMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCE 62

Query: 67 RARVSHTECICPAVTPKLMTYVDPNRAIRLIESCGQ 99
          RARV+H EC+CP +TPKL   +D NRA+RLIE CG+
Sbjct: 63 RARVTHIECVCPVITPKLAALIDVNRAVRLIEGCGR 97

The following BLAST results are available for this feature:

BLAST of CmoCh16G011510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G011510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L677_CUCSA	3.6e-34	79.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1	[more]
A0A0A0L5D3_CUCSA	3.6e-34	77.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1	[more]
F6H7X8_VITVI	7.8e-21	54.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=...	[more]
F6H7Y2_VITVI	7.8e-21	54.17	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=...	[more]
F6H7X9_VITVI	1.5e-19	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00030 PE=4 SV=...	[more]

BLAST of CmoCh16G011510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh16G011510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096493\|ref\|XP_008449126.1\|	4.0e-34	81.91	PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo]	[more]
gi\|778675994\|ref\|XP_011650514.1\|	5.2e-34	79.59	PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus]	[more]
gi\|449459012\|ref\|XP_004147240.1\|	5.2e-34	77.89	PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus]	[more]
gi\|659095793\|ref\|XP_008448771.1\|	4.4e-33	78.13	PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo]	[more]
gi\|359474408\|ref\|XP_003631456.1\|	1.1e-20	54.17	PREDICTED: uncharacterized protein LOC100853134 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G011510.1	CmoCh16G011510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 15..99 score: 3.
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 44..100 score: 2.3
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 42..99 score: 4.
None	No IPR available	PANTHER	PTHR33286	FAMILY NOT NAMED	coord: 4..97 score: 1.0
None	No IPR available	PANTHER	PTHR33286:SF7	SUBFAMILY NOT NAMED	coord: 4..97 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G011510	Cucsa.321380	Cucumber (Gy14) v1	cgycmoB0887
CmoCh16G011510	CmaCh16G011020	Cucurbita maxima (Rimu)	cmacmoB323
CmoCh16G011510	Cla008758	Watermelon (97103) v1	cmowmB294
CmoCh16G011510	Csa3G017110	Cucumber (Chinese Long) v2	cmocuB308
CmoCh16G011510	MELO3C013895	Melon (DHL92) v3.5.1	cmomeB291
CmoCh16G011510	ClCG10G002150	Watermelon (Charleston Gray)	cmowcgB272
CmoCh16G011510	CSPI03G02210	Wild cucumber (PI 183967)	cmocpiB316
CmoCh16G011510	Cp4.1LG14g09110	Cucurbita pepo (Zucchini)	cmocpeB308
CmoCh16G011510	MELO3C013895.2	Melon (DHL92) v3.6.1	cmomedB321
CmoCh16G011510	CsaV3_3G002240	Cucumber (Chinese Long) v3	cmocucB0371
CmoCh16G011510	Bhi11G000074	Wax gourd	cmowgoB0415
CmoCh16G011510	CsGy3G002110	Cucumber (Gy14) v2	cgybcmoB302
CmoCh16G011510	Carg23247	Silver-seed gourd	carcmoB0961

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G011510	Watermelon (97103) v2	cmowmbB341
CmoCh16G011510	Watermelon (97103) v2	cmowmbB315
CmoCh16G011510	Cucurbita moschata (Rifu)	cmocmoB282
CmoCh16G011510	Cucurbita moschata (Rifu)	cmocmoB294
CmoCh16G011510	Cucumber (Gy14) v1	cgycmoB0860
CmoCh16G011510	Cucurbita maxima (Rimu)	cmacmoB503
CmoCh16G011510	Cucurbita maxima (Rimu)	cmacmoB588
CmoCh16G011510	Cucurbita maxima (Rimu)	cmacmoB806
CmoCh16G011510	Wild cucumber (PI 183967)	cmocpiB321
CmoCh16G011510	Cucumber (Chinese Long) v2	cmocuB313
CmoCh16G011510	Melon (DHL92) v3.5.1	cmomeB282
CmoCh16G011510	Watermelon (Charleston Gray)	cmowcgB270
CmoCh16G011510	Watermelon (97103) v1	cmowmB283
CmoCh16G011510	Cucurbita pepo (Zucchini)	cmocpeB323
CmoCh16G011510	Cucurbita pepo (Zucchini)	cmocpeB328
CmoCh16G011510	Bottle gourd (USVL1VR-Ls)	cmolsiB309
CmoCh16G011510	Bottle gourd (USVL1VR-Ls)	cmolsiB311
CmoCh16G011510	Cucumber (Gy14) v2	cgybcmoB306
CmoCh16G011510	Melon (DHL92) v3.6.1	cmomedB320
CmoCh16G011510	Silver-seed gourd	carcmoB0766
CmoCh16G011510	Silver-seed gourd	carcmoB1051
CmoCh16G011510	Cucumber (Chinese Long) v3	cmocucB0376