Cla008758 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008758
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR003612 Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor
Location	Chr10 : 35976 .. 36299 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGCATTAGAATGGAGCGTTGGGGTTTGGTGGTGGCAGTGGTGGCATTAATGGCGGTGGCAGTGGGGGAAGTGACAGCGCTGACGGCGGCGGAATGTAAGGCGGAGAGAGATATGGCGGTGAAGGAGTGCATGGCGGTGGTGTTCGGGAGAAATCCGTCGCCGGCGTGCTGCGAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCAGCAGTTACGCCAAAGCTAATGACGTATGTAGATCCTAATCGCGCCATTCGCCTCATTGAAGGCTGCGGCCGTAAGGTCCCTCGCCATTTCAAATGCGGAAGTAATTAA

mRNA sequence

ATGGTGGGCATTAGAATGGAGCGTTGGGGTTTGGTGGTGGCAGTGGTGGCATTAATGGCGGTGGCAGTGGGGGAAGTGACAGCGCTGACGGCGGCGGAATGTAAGGCGGAGAGAGATATGGCGGTGAAGGAGTGCATGGCGGTGGTGTTCGGGAGAAATCCGTCGCCGGCGTGCTGCGAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCAGCAGTTACGCCAAAGCTAATGACGTATGTAGATCCTAATCGCGCCATTCGCCTCATTGAAGGCTGCGGCCGTAAGGTCCCTCGCCATTTCAAATGCGGAAGTAATTAA

Coding sequence (CDS)

ATGGTGGGCATTAGAATGGAGCGTTGGGGTTTGGTGGTGGCAGTGGTGGCATTAATGGCGGTGGCAGTGGGGGAAGTGACAGCGCTGACGGCGGCGGAATGTAAGGCGGAGAGAGATATGGCGGTGAAGGAGTGCATGGCGGTGGTGTTCGGGAGAAATCCGTCGCCGGCGTGCTGCGAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCAGCAGTTACGCCAAAGCTAATGACGTATGTAGATCCTAATCGCGCCATTCGCCTCATTGAAGGCTGCGGCCGTAAGGTCCCTCGCCATTTCAAATGCGGAAGTAATTAA

Protein sequence

MVGIRMERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSN

Homology

[Close]

BLAST of Cla008758 vs. TrEMBL
Match: A0A0A0L5D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.5e-46
Identity = 90/106 (84.91%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 1   MVGIRMERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCE 60
           MVGIR  RWGLV+ VVA+MA+ VGEV ALTAAECK ERDMAV+EC+AVVFGRNPSPACCE
Sbjct: 1   MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE 60

Query: 61  RARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           RARVSHTECIC AVTPKLMTYVDP+RAIRLI+ CGR+VPRHFKCGS
Sbjct: 61  RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGS 106

[Close]

BLAST of Cla008758 vs. TrEMBL
Match: A0A0A0L677_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-44
Identity = 90/107 (84.11%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MVGI-RMERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACC 60
           MVGI +M RWGLV+AVVA+MA+AVGEV ALTAAEC+AERDMAV  C +V+FGRNPSPACC
Sbjct: 1   MVGIIKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACC 60

Query: 61  ERARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           +RARVSHT CICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS
Sbjct: 61  QRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGS 107

[Close]

BLAST of Cla008758 vs. TrEMBL
Match: F6H7X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 9   WGLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARV 68
           WG++V +V L+ + + EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WGVMVVLVVLL-LGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 69  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           +H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGS 107

[Close]

BLAST of Cla008758 vs. TrEMBL
Match: F6H7Y2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 9   WGLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARV 68
           WG++V +V L+ + + EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WGVMVVLVVLL-LGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 69  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           +H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGS 107

[Close]

BLAST of Cla008758 vs. TrEMBL
Match: F6H7X9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00030 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.8e-28
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1


Query: 10  GLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVS 69
           G++V +V ++ V + EV     A +AAECK E  +A+K C  VV+G +PSPACCERARV+
Sbjct: 8   GVMVVLVVVLVVGMWEVKTSSAAPSAAECKEETRLAIKACKPVVYGMDPSPACCERARVT 67

Query: 70  HTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           H EC+CP +TPKL   +D N+A+R+IEGCGRKVPRH+KCGS
Sbjct: 68  HVECVCPLITPKLAALIDVNKAVRVIEGCGRKVPRHYKCGS 108

[Close]

BLAST of Cla008758 vs. NCBI nr
Match: gi|449459012|ref|XP_004147240.1| (PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus])

HSP 1 Score: 192.6 bits (488), Expect = 3.6e-46
Identity = 90/106 (84.91%), Postives = 98/106 (92.45%), Query Frame = 1


Query: 1   MVGIRMERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCE 60
           MVGIR  RWGLV+ VVA+MA+ VGEV ALTAAECK ERDMAV+EC+AVVFGRNPSPACCE
Sbjct: 1   MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE 60

Query: 61  RARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           RARVSHTECIC AVTPKLMTYVDP+RAIRLI+ CGR+VPRHFKCGS
Sbjct: 61  RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGS 106

[Close]

BLAST of Cla008758 vs. NCBI nr
Match: gi|659095793|ref|XP_008448771.1| (PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 90/107 (84.11%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MVGIRMERWGLVVAVV-ALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACC 60
           MVGIR  RWGLV+ VV A+MA+ VGEV ALTAAECKAERDMAVK+C+AVVFGRNPSPACC
Sbjct: 1   MVGIREGRWGLVMGVVLAVMAMGVGEVAALTAAECKAERDMAVKKCLAVVFGRNPSPACC 60

Query: 61  ERARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           ERARVSH ECICPAVT KLMTYVDP+RAIRLI+ CGR+VPRHFKCGS
Sbjct: 61  ERARVSHAECICPAVTSKLMTYVDPSRAIRLIQSCGRRVPRHFKCGS 107

[Close]

BLAST of Cla008758 vs. NCBI nr
Match: gi|778675994|ref|XP_011650514.1| (PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 2.0e-44
Identity = 90/107 (84.11%), Postives = 98/107 (91.59%), Query Frame = 1


Query: 1   MVGI-RMERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACC 60
           MVGI +M RWGLV+AVVA+MA+AVGEV ALTAAEC+AERDMAV  C +V+FGRNPSPACC
Sbjct: 1   MVGIIKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACC 60

Query: 61  ERARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           +RARVSHT CICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS
Sbjct: 61  QRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGS 107

[Close]

BLAST of Cla008758 vs. NCBI nr
Match: gi|659096493|ref|XP_008449126.1| (PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 7.5e-44
Identity = 89/104 (85.58%), Postives = 96/104 (92.31%), Query Frame = 1


Query: 4   IRMERWGLVVAVVAL-MAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERA 63
           IRM RWGLV+AVVA+ MA+AVGEV ALTAAEC+AERDMAV  C +V+FGRNPSPACC+RA
Sbjct: 5   IRMGRWGLVMAVVAIIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACCQRA 64

Query: 64  RVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           RVSHTECICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS
Sbjct: 65  RVSHTECICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGS 108

[Close]

BLAST of Cla008758 vs. NCBI nr
Match: gi|731380357|ref|XP_010662612.1| (PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera])

HSP 1 Score: 134.8 bits (338), Expect = 8.9e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 9   WGLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARV 68
           WG++V +V L+ + + EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WGVMVVLVVLL-LGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 69  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 107
           +H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGS 107

The following BLAST results are available for this feature:

BLAST of Cla008758 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D3_CUCSA	2.5e-46	84.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1	[more]
A0A0A0L677_CUCSA	1.4e-44	84.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1	[more]
F6H7X8_VITVI	6.2e-29	59.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=...	[more]
F6H7Y2_VITVI	6.2e-29	59.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=...	[more]
F6H7X9_VITVI	6.8e-28	57.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00030 PE=4 SV=...	[more]

BLAST of Cla008758 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459012\|ref\|XP_004147240.1\|	3.6e-46	84.91	PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus]	[more]
gi\|659095793\|ref\|XP_008448771.1\|	1.2e-44	84.11	PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo]	[more]
gi\|778675994\|ref\|XP_011650514.1\|	2.0e-44	84.11	PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus]	[more]
gi\|659096493\|ref\|XP_008449126.1\|	7.5e-44	85.58	PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo]	[more]
gi\|731380357\|ref\|XP_010662612.1\|	8.9e-29	59.80	PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008758	Cla008758.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 17..104 score: 3.5
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 42..100 score: 1.0
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 41..100 score: 2.
None	No IPR available	PANTHER	PTHR33286	FAMILY NOT NAMED	coord: 1..106 score: 3.4
None	No IPR available	PANTHER	PTHR33286:SF7	SUBFAMILY NOT NAMED	coord: 1..106 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008758	Csa3G017110	Cucumber (Chinese Long) v2	cuwmB200
Cla008758	MELO3C013895	Melon (DHL92) v3.5.1	mewmB446
Cla008758	ClCG10G002150	Watermelon (Charleston Gray)	wcgwmB056
Cla008758	CSPI03G02210	Wild cucumber (PI 183967)	cpiwmB200
Cla008758	Cucsa.321380	Cucumber (Gy14) v1	cgywmB583
Cla008758	CmaCh16G011020	Cucurbita maxima (Rimu)	cmawmB299
Cla008758	CmoCh16G011510	Cucurbita moschata (Rifu)	cmowmB294
Cla008758	Cp4.1LG14g09110	Cucurbita pepo (Zucchini)	cpewmB210
Cla008758	CsGy3G002110	Cucumber (Gy14) v2	cgybwmB188
Cla008758	MELO3C013895.2	Melon (DHL92) v3.6.1	medwmB438
Cla008758	Carg23247	Silver-seed gourd	carwmB0703
Cla008758	CsaV3_3G002240	Cucumber (Chinese Long) v3	cucwmB209
Cla008758	Bhi11G000074	Wax gourd	wgowmB010

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008758	Watermelon (97103) v2	wmwmbB056
Cla008758	Watermelon (97103) v1	wmwmB046
Cla008758	Cucurbita maxima (Rimu)	cmawmB784
Cla008758	Cucurbita moschata (Rifu)	cmowmB777
Cla008758	Melon (DHL92) v3.5.1	mewmB456
Cla008758	Cucumber (Chinese Long) v2	cuwmB207
Cla008758	Cucurbita pepo (Zucchini)	cpewmB832
Cla008758	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008758	Silver-seed gourd	carwmB0561