ClCG10G002150 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G002150
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Location	CG_Chr10 : 2424542 .. 2424850 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGTTGGGGTTTGGTGGTGGCAGTGGTGGCATTAATGGCGGTGGCAGTGGGGGAAGTGACAGCGCTGACGGCGGCGGAATGTAAGGCGGAGAGAGATATGGCGGTGAAGGAGTGCATGGCGGTGGTGTTCGGGAGAAATCCGTCGCCGGCGTGCTGCGAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCAGCAGTTACGCCAAAGCTAATGACGTATGTAGATCCTAATCGCGCCATTCGCCTCATTGAAGGCTGCGGCCGTAAGGTCCCTCGCCATTTCAAATGCGGAAGTAATTAA

mRNA sequence

ATGGAGCGTTGGGGTTTGGTGGTGGCAGTGGTGGCATTAATGGCGGTGGCAGTGGGGGAAGTGACAGCGCTGACGGCGGCGGAATGTAAGGCGGAGAGAGATATGGCGGTGAAGGAGTGCATGGCGGTGGTGTTCGGGAGAAATCCGTCGCCGGCGTGCTGCGAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCAGCAGTTACGCCAAAGCTAATGACGTATGTAGATCCTAATCGCGCCATTCGCCTCATTGAAGGCTGCGGCCGTAAGGTCCCTCGCCATTTCAAATGCGGAAGTAATTAA

Coding sequence (CDS)

ATGGAGCGTTGGGGTTTGGTGGTGGCAGTGGTGGCATTAATGGCGGTGGCAGTGGGGGAAGTGACAGCGCTGACGGCGGCGGAATGTAAGGCGGAGAGAGATATGGCGGTGAAGGAGTGCATGGCGGTGGTGTTCGGGAGAAATCCGTCGCCGGCGTGCTGCGAGAGGGCGAGAGTGAGCCATACGGAGTGTATTTGCCCAGCAGTTACGCCAAAGCTAATGACGTATGTAGATCCTAATCGCGCCATTCGCCTCATTGAAGGCTGCGGCCGTAAGGTCCCTCGCCATTTCAAATGCGGAAGTAATTAA

Protein sequence

MERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVSHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGSN

Homology

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BLAST of ClCG10G002150 vs. TrEMBL
Match: A0A0A0L5D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.0e-44
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 3   RWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVSHT 62
           RWGLV+ VVA+MA+ VGEV ALTAAECK ERDMAV+EC+AVVFGRNPSPACCERARVSHT
Sbjct: 8   RWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCERARVSHT 67

Query: 63  ECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           ECIC AVTPKLMTYVDP+RAIRLI+ CGR+VPRHFKCGS
Sbjct: 68  ECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGS 106

[Close]

BLAST of ClCG10G002150 vs. TrEMBL
Match: A0A0A0L677_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-43
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 1


Query: 1   MERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVS 60
           M RWGLV+AVVA+MA+AVGEV ALTAAEC+AERDMAV  C +V+FGRNPSPACC+RARVS
Sbjct: 7   MGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACCQRARVS 66

Query: 61  HTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           HT CICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS
Sbjct: 67  HTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGS 107

[Close]

BLAST of ClCG10G002150 vs. TrEMBL
Match: F6H7X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 4   WGLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARV 63
           WG++V +V L+ + + EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WGVMVVLVVLL-LGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 64  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           +H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGS 107

[Close]

BLAST of ClCG10G002150 vs. TrEMBL
Match: F6H7Y2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.9e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 4   WGLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARV 63
           WG++V +V L+ + + EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WGVMVVLVVLL-LGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 64  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           +H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGS 107

[Close]

BLAST of ClCG10G002150 vs. TrEMBL
Match: F6H7X9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00030 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.5e-28
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1


Query: 5   GLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVS 64
           G++V +V ++ V + EV     A +AAECK E  +A+K C  VV+G +PSPACCERARV+
Sbjct: 8   GVMVVLVVVLVVGMWEVKTSSAAPSAAECKEETRLAIKACKPVVYGMDPSPACCERARVT 67

Query: 65  HTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           H EC+CP +TPKL   +D N+A+R+IEGCGRKVPRH+KCGS
Sbjct: 68  HVECVCPLITPKLAALIDVNKAVRVIEGCGRKVPRHYKCGS 108

[Close]

BLAST of ClCG10G002150 vs. NCBI nr
Match: gi|449459012|ref|XP_004147240.1| (PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 7.1e-44
Identity = 85/99 (85.86%), Postives = 93/99 (93.94%), Query Frame = 1


Query: 3   RWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVSHT 62
           RWGLV+ VVA+MA+ VGEV ALTAAECK ERDMAV+EC+AVVFGRNPSPACCERARVSHT
Sbjct: 8   RWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCERARVSHT 67

Query: 63  ECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           ECIC AVTPKLMTYVDP+RAIRLI+ CGR+VPRHFKCGS
Sbjct: 68  ECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGS 106

[Close]

BLAST of ClCG10G002150 vs. NCBI nr
Match: gi|778675994|ref|XP_011650514.1| (PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-43
Identity = 86/101 (85.15%), Postives = 93/101 (92.08%), Query Frame = 1


Query: 1   MERWGLVVAVVALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVS 60
           M RWGLV+AVVA+MA+AVGEV ALTAAEC+AERDMAV  C +V+FGRNPSPACC+RARVS
Sbjct: 7   MGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACCQRARVS 66

Query: 61  HTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           HT CICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS
Sbjct: 67  HTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGS 107

[Close]

BLAST of ClCG10G002150 vs. NCBI nr
Match: gi|659096493|ref|XP_008449126.1| (PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 7.9e-43
Identity = 87/102 (85.29%), Postives = 94/102 (92.16%), Query Frame = 1


Query: 1   MERWGLVVAVVAL-MAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARV 60
           M RWGLV+AVVA+ MA+AVGEV ALTAAEC+AERDMAV  C +V+FGRNPSPACC+RARV
Sbjct: 7   MGRWGLVMAVVAIIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACCQRARV 66

Query: 61  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           SHTECICPAVTPKLMTYVDP RAIRLIE CGRKVPRHFKCGS
Sbjct: 67  SHTECICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGS 108

[Close]

BLAST of ClCG10G002150 vs. NCBI nr
Match: gi|659095793|ref|XP_008448771.1| (PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-42
Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 3   RWGLVVAVV-ALMAVAVGEVTALTAAECKAERDMAVKECMAVVFGRNPSPACCERARVSH 62
           RWGLV+ VV A+MA+ VGEV ALTAAECKAERDMAVK+C+AVVFGRNPSPACCERARVSH
Sbjct: 8   RWGLVMGVVLAVMAMGVGEVAALTAAECKAERDMAVKKCLAVVFGRNPSPACCERARVSH 67

Query: 63  TECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
            ECICPAVT KLMTYVDP+RAIRLI+ CGR+VPRHFKCGS
Sbjct: 68  AECICPAVTSKLMTYVDPSRAIRLIQSCGRRVPRHFKCGS 107

[Close]

BLAST of ClCG10G002150 vs. NCBI nr
Match: gi|731380357|ref|XP_010662612.1| (PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera])

HSP 1 Score: 134.8 bits (338), Expect = 8.4e-29
Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1


Query: 4   WGLVVAVVALMAVAVGEV----TALTAAECKAERDMAVKECMAVVFGRNPSPACCERARV 63
           WG++V +V L+ + + EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WGVMVVLVVLL-LGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 64  SHTECICPAVTPKLMTYVDPNRAIRLIEGCGRKVPRHFKCGS 102
           +H EC+CP +TPKL   +D NRA+RLIEGCGRKVPRH+KCGS
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGS 107

The following BLAST results are available for this feature:

BLAST of ClCG10G002150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5D3_CUCSA	5.0e-44	85.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1	[more]
A0A0A0L677_CUCSA	1.4e-43	85.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1	[more]
F6H7X8_VITVI	5.9e-29	59.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=...	[more]
F6H7Y2_VITVI	5.9e-29	59.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=...	[more]
F6H7X9_VITVI	6.5e-28	57.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00030 PE=4 SV=...	[more]

BLAST of ClCG10G002150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459012\|ref\|XP_004147240.1\|	7.1e-44	85.86	PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus]	[more]
gi\|778675994\|ref\|XP_011650514.1\|	2.1e-43	85.15	PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus]	[more]
gi\|659096493\|ref\|XP_008449126.1\|	7.9e-43	85.29	PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo]	[more]
gi\|659095793\|ref\|XP_008448771.1\|	2.3e-42	85.00	PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo]	[more]
gi\|731380357\|ref\|XP_010662612.1\|	8.4e-29	59.80	PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016140	Bifunc_inhib/LTP/seed_store

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G002150.1	ClCG10G002150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 12..99 score: 3.0
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 37..95 score: 9.3
None	No IPR available	GENE3D	G3DSA:1.10.110.10		coord: 36..95 score: 2.
None	No IPR available	PANTHER	PTHR33286	FAMILY NOT NAMED	coord: 6..101 score: 3.6
None	No IPR available	PANTHER	PTHR33286:SF7	SUBFAMILY NOT NAMED	coord: 6..101 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G002150	Csa3G017110	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G002150	MELO3C013895	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G002150	Cla008758	Watermelon (97103) v1	wcgwmB056
ClCG10G002150	Bhi11G000074	Wax gourd	wcgwgoB095
ClCG10G002150	CSPI03G02210	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G002150	Cucsa.321380	Cucumber (Gy14) v1	cgywcgB556
ClCG10G002150	CmaCh16G011020	Cucurbita maxima (Rimu)	cmawcgB281
ClCG10G002150	CmoCh16G011510	Cucurbita moschata (Rifu)	cmowcgB272
ClCG10G002150	Cp4.1LG14g09110	Cucurbita pepo (Zucchini)	cpewcgB189
ClCG10G002150	CsGy3G002110	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G002150	MELO3C013895.2	Melon (DHL92) v3.6.1	medwcgB401
ClCG10G002150	Carg23247	Silver-seed gourd	carwcgB0683
ClCG10G002150	CsaV3_3G002240	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G002150	Cucumber (Chinese Long) v3	cucwcgB196
ClCG10G002150	Watermelon (97103) v2	wcgwmbB038
ClCG10G002150	Watermelon (97103) v2	wcgwmbB053
ClCG10G002150	Watermelon (Charleston Gray)	wcgwcgB003
ClCG10G002150	Watermelon (Charleston Gray)	wcgwcgB052
ClCG10G002150	Cucumber (Gy14) v1	cgywcgB535
ClCG10G002150	Cucurbita maxima (Rimu)	cmawcgB453
ClCG10G002150	Cucurbita maxima (Rimu)	cmawcgB515
ClCG10G002150	Cucurbita maxima (Rimu)	cmawcgB727
ClCG10G002150	Cucurbita moschata (Rifu)	cmowcgB513
ClCG10G002150	Cucurbita moschata (Rifu)	cmowcgB730
ClCG10G002150	Wild cucumber (PI 183967)	cpiwcgB192
ClCG10G002150	Cucumber (Chinese Long) v2	cuwcgB191
ClCG10G002150	Melon (DHL92) v3.5.1	mewcgB317
ClCG10G002150	Watermelon (97103) v1	wcgwmB045
ClCG10G002150	Cucurbita pepo (Zucchini)	cpewcgB631
ClCG10G002150	Cucurbita pepo (Zucchini)	cpewcgB766
ClCG10G002150	Cucurbita pepo (Zucchini)	cpewcgB773
ClCG10G002150	Bottle gourd (USVL1VR-Ls)	lsiwcgB320
ClCG10G002150	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G002150	Cucumber (Gy14) v2	cgybwcgB176
ClCG10G002150	Melon (DHL92) v3.6.1	medwcgB312
ClCG10G002150	Silver-seed gourd	carwcgB0549
ClCG10G002150	Silver-seed gourd	carwcgB0754