CSPI03G02210 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G02210
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
LocationChr3 : 1660272 .. 1661540 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACATCACAACTCCCAAGTCAATTCCTCCCCAATAAAGAAAAGAAATTGCAAGACCCTTCCGCACGCGCACGCAGCACTATAAATAAATCAACCACGCTAAGGAGGCCAAACGCCAAAGGGCATTTGTTTGAGTGAGGACTTTTATCAAACAGATGGTGGGCATTAGAGAGGGTCGTTGGGGATTAGTAATGGTAGTGGTGGCAGTAATGGCGATGGGAGTGGGGGAAGTGATGGCGCTGACGGCTGCGGAATGTAAGACGGAGAGAGATATGGCGGTGAGGGAGTGTTTAGCAGTGGTGTTTGGGAGGAATCCGTCACCGGCGTGTTGCGAGAGAGCGAGAGTGAGCCATACAGAGTGCATTTGCGCAGCAGTTACGCCTAAGCTTATGACTTATGTTGATCCTAGTCGCGCCATTCGGCTCATTCAAAGCTGCGGCCGTAGAGTCCCTCGCCATTTCAAATGTGGAAGTAATTAACTTCTCTAAACTCTCTCTCTCTCTCTCTTTAAATTAGAATTAGAATTTTCATCATTGATTTTGGGTTACAAAAGGGATGTTGTTCATGTGTTCTTCAATCTTTGAATCACTAAGTTGGTTTTGAAAAAATGATTAATAAATGATGAAATTGTAAATTTTTACTATTAAAAACGAAATTTATTTTGAAAAAAATCTAAAAAAAATATAAGAAACAATTATCTAAATCTATCATAATACATACATAAATCCTAATTTATTGTGGAAAACTTTTGAAATAGTAAAGGTCTCAATCCCAACTTAGACCAATACTAATTGACAGGAAATAGATATAACATTTTTTTATAATTTAATATTTTAAAAAATAAATTTTATATTGGATATAAAATAAAAGGGACATTTTTTTTGTAAATATGTAAAATAATCAACTTCTTTTTCCTATTTATTTAATTTTTAATGCATGTGAAACTTAATTATCTAAATATGTGATTTTTTTTAATGAAAGACTAAATAAGTGAAATTAATGTTTGTAAATGCAGGTTTTACCACTCCATGAAATATAACATTGGGATCATCCAAGCAAACGTCAAGAGAAAAGGAAAAGAAAAAGATGAATAGAGATGAAGAATTGATTGATGTGTGATTTTTTTTTTCTTTTCACTTGTTTGTTTGTAATTAATTAATATGAATTGCTTTTAATTATGACCTTAGTTAAAATAAATAGACGGTTAAAGTTTGTTAAGCTTAATGTATTCAAGTTTTTCTTTATATAAATATATGAGTGAAGATATGAG

mRNA sequence

ATGGTGGGCATTAGAGAGGGTCGTTGGGGATTAGTAATGGTAGTGGTGGCAGTAATGGCGATGGGAGTGGGGGAAGTGATGGCGCTGACGGCTGCGGAATGTAAGACGGAGAGAGATATGGCGGTGAGGGAGTGTTTAGCAGTGGTGTTTGGGAGGAATCCGTCACCGGCGTGTTGCGAGAGAGCGAGAGTGAGCCATACAGAGTGCATTTGCGCAGCAGTTACGCCTAAGCTTATGACTTATGTTGATCCTAGTCGCGCCATTCGGCTCATTCAAAGCTGCGGCCGTAGAGTCCCTCGCCATTTCAAATGTGGAAGTTTTACCACTCCATGA

Coding sequence (CDS)

ATGGTGGGCATTAGAGAGGGTCGTTGGGGATTAGTAATGGTAGTGGTGGCAGTAATGGCGATGGGAGTGGGGGAAGTGATGGCGCTGACGGCTGCGGAATGTAAGACGGAGAGAGATATGGCGGTGAGGGAGTGTTTAGCAGTGGTGTTTGGGAGGAATCCGTCACCGGCGTGTTGCGAGAGAGCGAGAGTGAGCCATACAGAGTGCATTTGCGCAGCAGTTACGCCTAAGCTTATGACTTATGTTGATCCTAGTCGCGCCATTCGGCTCATTCAAAGCTGCGGCCGTAGAGTCCCTCGCCATTTCAAATGTGGAAGTTTTACCACTCCATGA
Homology
[Close]
BLAST of CSPI03G02210 vs. TrEMBL
Match: A0A0A0L5D3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 4.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE 60
           MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE
Sbjct: 1   MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE 60

Query: 61  RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP
Sbjct: 61  RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 110

[Close]
BLAST of CSPI03G02210 vs. TrEMBL
Match: A0A0A0L677_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-44
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 1 

Query: 1   MVGI-REGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACC 60
           MVGI + GRWGLVM VVA+MAM VGEV ALTAAEC+ ERDMAV  C +V+FGRNPSPACC
Sbjct: 1   MVGIIKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACC 60

Query: 61  ERARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           +RARVSHT CIC AVTPKLMTYVDP RAIRLI+SCGR+VPRHFKCGSFTTP
Sbjct: 61  QRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGSFTTP 111

[Close]
BLAST of CSPI03G02210 vs. TrEMBL
Match: F6H7X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 9   WGLVMVVVAVMAMGVGEVM----ALTAAECKTERDMAVRECLAVVFGRNPSPACCERARV 68
           WG VMVV+ V+ +G+ EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WG-VMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 69  SHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           +H EC+C  +TPKL   +D +RA+RLI+ CGR+VPRH+KCGS TTP
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGSITTP 111

[Close]
BLAST of CSPI03G02210 vs. TrEMBL
Match: F6H7Y2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 9   WGLVMVVVAVMAMGVGEVM----ALTAAECKTERDMAVRECLAVVFGRNPSPACCERARV 68
           WG VMVV+ V+ +G+ EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WG-VMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 69  SHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           +H EC+C  +TPKL   +D +RA+RLI+ CGR+VPRH+KCGS TTP
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGSITTP 111

[Close]
BLAST of CSPI03G02210 vs. TrEMBL
Match: V4VKY5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022946mg PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 61/107 (57.01%), Postives = 77/107 (71.96%), Query Frame = 1 

Query: 8   RWGLVMVVVAVMAM---GVGEVMA-LTAAECKTERDMAVRECLAVVFGRNPSPACCERAR 67
           RW LV +V  V+ M    +G   A L+AA+CK ER + + EC  V++G+ PSP+CCER R
Sbjct: 6   RWSLVFLVANVVGMWEVNMGASAAGLSAAQCKEERRIGLNECKPVLYGKLPSPSCCERVR 65

Query: 68  VSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           VSH EC+C  +TPKL   +D +RAIRLI+ CGRRVPRHFKCGS TTP
Sbjct: 66  VSHIECVCPVITPKLAALIDVNRAIRLIEGCGRRVPRHFKCGSITTP 112

[Close]
BLAST of CSPI03G02210 vs. NCBI nr
Match: gi|449459012|ref|XP_004147240.1| (PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 6.7e-56
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE 60
           MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE
Sbjct: 1   MVGIREGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCE 60

Query: 61  RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP
Sbjct: 61  RARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 110

[Close]
BLAST of CSPI03G02210 vs. NCBI nr
Match: gi|659095793|ref|XP_008448771.1| (PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo])

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-49
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 1 

Query: 1   MVGIREGRWGLVM-VVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACC 60
           MVGIREGRWGLVM VV+AVMAMGVGEV ALTAAECK ERDMAV++CLAVVFGRNPSPACC
Sbjct: 1   MVGIREGRWGLVMGVVLAVMAMGVGEVAALTAAECKAERDMAVKKCLAVVFGRNPSPACC 60

Query: 61  ERARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           ERARVSH ECIC AVT KLMTYVDPSRAIRLIQSCGRRVPRHFKCGS+TTP
Sbjct: 61  ERARVSHAECICPAVTSKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSYTTP 111

[Close]
BLAST of CSPI03G02210 vs. NCBI nr
Match: gi|778675994|ref|XP_011650514.1| (PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.6e-44
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 1 

Query: 1   MVGI-REGRWGLVMVVVAVMAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACC 60
           MVGI + GRWGLVM VVA+MAM VGEV ALTAAEC+ ERDMAV  C +V+FGRNPSPACC
Sbjct: 1   MVGIIKMGRWGLVMAVVAIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACC 60

Query: 61  ERARVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           +RARVSHT CIC AVTPKLMTYVDP RAIRLI+SCGR+VPRHFKCGSFTTP
Sbjct: 61  QRARVSHTVCICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGSFTTP 111

[Close]
BLAST of CSPI03G02210 vs. NCBI nr
Match: gi|659096493|ref|XP_008449126.1| (PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 90/108 (83.33%), Postives = 97/108 (89.81%), Query Frame = 1 

Query: 4   IREGRWGLVMVVVAV-MAMGVGEVMALTAAECKTERDMAVRECLAVVFGRNPSPACCERA 63
           IR GRWGLVM VVA+ MAM VGEV ALTAAEC+ ERDMAV  C +V+FGRNPSPACC+RA
Sbjct: 5   IRMGRWGLVMAVVAIIMAMAVGEVAALTAAECQAERDMAVNACKSVLFGRNPSPACCQRA 64

Query: 64  RVSHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           RVSHTECIC AVTPKLMTYVDP RAIRLI+SCGR+VPRHFKCGSFTTP
Sbjct: 65  RVSHTECICPAVTPKLMTYVDPIRAIRLIESCGRKVPRHFKCGSFTTP 112

[Close]
BLAST of CSPI03G02210 vs. NCBI nr
Match: gi|731380357|ref|XP_010662612.1| (PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera])

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 9   WGLVMVVVAVMAMGVGEVM----ALTAAECKTERDMAVRECLAVVFGRNPSPACCERARV 68
           WG VMVV+ V+ +G+ EV     A +AAECK ER +A+  C  VV+G++PSPACCERARV
Sbjct: 7   WG-VMVVLVVLLLGMWEVKTGSAAPSAAECKEERRLAINACKPVVYGKDPSPACCERARV 66

Query: 69  SHTECICAAVTPKLMTYVDPSRAIRLIQSCGRRVPRHFKCGSFTTP 111
           +H EC+C  +TPKL   +D +RA+RLI+ CGR+VPRH+KCGS TTP
Sbjct: 67  THIECVCPVITPKLAALIDVNRAVRLIEGCGRKVPRHYKCGSITTP 111

The following BLAST results are available for this feature:
BLAST of CSPI03G02210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G02210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5D3_CUCSA4.7e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017110 PE=4 SV=1[more]
A0A0A0L677_CUCSA1.1e-4481.98Uncharacterized protein OS=Cucumis sativus GN=Csa_3G073790 PE=4 SV=1[more]
F6H7X8_VITVI1.9e-2858.49Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00020 PE=4 SV=... [more]
F6H7Y2_VITVI1.9e-2858.49Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0236g00060 PE=4 SV=... [more]
V4VKY5_9ROSI1.0e-2657.01Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022946mg PE=4 SV=1[more]
BLAST of CSPI03G02210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G02210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459012|ref|XP_004147240.1|6.7e-56100.00PREDICTED: uncharacterized protein LOC101207186 [Cucumis sativus][more]
gi|659095793|ref|XP_008448771.1|1.2e-4990.99PREDICTED: uncharacterized protein LOC103490836 [Cucumis melo][more]
gi|778675994|ref|XP_011650514.1|1.6e-4481.98PREDICTED: uncharacterized protein LOC101222349 [Cucumis sativus][more]
gi|659096493|ref|XP_008449126.1|2.7e-4483.33PREDICTED: uncharacterized protein LOC103491080 [Cucumis melo][more]
gi|731380357|ref|XP_010662612.1|2.7e-2858.49PREDICTED: uncharacterized protein LOC104882174 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G02210.1CSPI03G02210.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 14..104
score: 3.0
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainunknownSSF47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 42..100
score: 1.0
NoneNo IPR availableGENE3DG3DSA:1.10.110.10coord: 41..100
score: 5.
NoneNo IPR availablePANTHERPTHR33286FAMILY NOT NAMEDcoord: 3..110
score: 2.2
NoneNo IPR availablePANTHERPTHR33286:SF7SUBFAMILY NOT NAMEDcoord: 3..110
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G02210Cla008758Watermelon (97103) v1cpiwmB200
CSPI03G02210Csa3G017110Cucumber (Chinese Long) v2cpicuB120
CSPI03G02210MELO3C013895Melon (DHL92) v3.5.1cpimeB240
CSPI03G02210ClCG10G002150Watermelon (Charleston Gray)cpiwcgB190
CSPI03G02210MELO3C013895.2Melon (DHL92) v3.6.1cpimedB225
CSPI03G02210CsaV3_3G002240Cucumber (Chinese Long) v3cpicucB144
CSPI03G02210Bhi11G000074Wax gourdcpiwgoB239
CSPI03G02210Cucsa.321380Cucumber (Gy14) v1cgycpiB484
CSPI03G02210CmaCh16G011020Cucurbita maxima (Rimu)cmacpiB325
CSPI03G02210CmoCh16G011510Cucurbita moschata (Rifu)cmocpiB316
CSPI03G02210Cp4.1LG14g09110Cucurbita pepo (Zucchini)cpecpiB207
CSPI03G02210CsGy3G002110Cucumber (Gy14) v2cgybcpiB110
CSPI03G02210Carg23247Silver-seed gourdcarcpiB0742
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G02210Wild cucumber (PI 183967)cpicpiB100
CSPI03G02210Wild cucumber (PI 183967)cpicpiB103
CSPI03G02210Cucumber (Gy14) v1cgycpiB474
CSPI03G02210Cucurbita maxima (Rimu)cmacpiB262
CSPI03G02210Cucurbita maxima (Rimu)cmacpiB521
CSPI03G02210Cucurbita maxima (Rimu)cmacpiB608
CSPI03G02210Cucurbita maxima (Rimu)cmacpiB838
CSPI03G02210Cucurbita moschata (Rifu)cmocpiB597
CSPI03G02210Cucurbita moschata (Rifu)cmocpiB823
CSPI03G02210Cucumber (Chinese Long) v2cpicuB122
CSPI03G02210Cucumber (Chinese Long) v2cpicuB125
CSPI03G02210Melon (DHL92) v3.5.1cpimeB218
CSPI03G02210Melon (DHL92) v3.5.1cpimeB238
CSPI03G02210Watermelon (Charleston Gray)cpiwcgB180
CSPI03G02210Watermelon (Charleston Gray)cpiwcgB235
CSPI03G02210Watermelon (97103) v1cpiwmB184
CSPI03G02210Watermelon (97103) v1cpiwmB240
CSPI03G02210Cucurbita pepo (Zucchini)cpecpiB720
CSPI03G02210Cucurbita pepo (Zucchini)cpecpiB852
CSPI03G02210Cucurbita pepo (Zucchini)cpecpiB868
CSPI03G02210Bottle gourd (USVL1VR-Ls)cpilsiB218
CSPI03G02210Bottle gourd (USVL1VR-Ls)cpilsiB227
CSPI03G02210Melon (DHL92) v3.6.1cpimedB213
CSPI03G02210Cucumber (Gy14) v2cgybcpiB113
CSPI03G02210Silver-seed gourdcarcpiB0597
CSPI03G02210Silver-seed gourdcarcpiB0818
CSPI03G02210Cucumber (Chinese Long) v3cpicucB146
CSPI03G02210Watermelon (97103) v2cpiwmbB184
CSPI03G02210Watermelon (97103) v2cpiwmbB261