CmoCh16G005640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G005640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr16 : 2748616 .. 2749643 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATCCCATTCTTCAGAATCTTCATAGGGATGGAGGAAACGGATAGCCTCTCTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTGTGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGTAAGTTCCTTCTTCAACTCAGCCATCAAGTACTTTCCTTGATCTAAGATTAGAATGCTGCTAAACGAAACCAAAAACAGAAACGGAATGACTCAACTAGGTCCATTTAAAGCATGACTGTTGGTCGTATAAAATCGAATAATAGTCAGTTAGTTCTGTTCATGTATGATCAATTTGATGGTTGATTTTGTCACATTCAATCGATTAAGTCAGGGAGGGGAGATGTATAACGGCCACATACGGAATATCGATACAACACAGTACCTTGTTTATCTGATTCGGTTGAATTCTTTAGCGCAGGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCCCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAAAAGGGTGTTTAACAAAGGCCTGTTGCTCCATCCACATAACCTTATTGCTTTTGAATTCACAAAAAGCAAATAGAGCCAGGCCCCTTTGTTGTTAAACAGATTAAAACAACAGTATCCATTTAAAAAGCAATTGTATTAAATAACCTCACTAAGTCTACAAGCCAACAACAAGCACAGAAAATTTCCCAAGATTTGTGATTGTGTTATATATGAGAACTAGAATCAACTGTACTTACAAGCATAACCCGACGTGGTGTATACAAACAAGAAGCGTATTTGTCCGAGACCGAGC

mRNA sequence

ATTCATCCCATTCTTCAGAATCTTCATAGGGATGGAGGAAACGGATAGCCTCTCTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTGTGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCCCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAAAAGGGTGTTTAACAAAGGCCTGTTGCTCCATCCACATAACCTTATTGCTTTTGAATTCACAAAAAGCAAATAGAGCCAGGCCCCTTTGTTGTTAAACAGATTAAAACAACAGTATCCATTTAAAAAGCAATTGTATTAAATAACCTCACTAAGTCTACAAGCCAACAACAAGCACAGAAAATTTCCCAAGATTTGTGATTGTGTTATATATGAGAACTAGAATCAACTGTACTTACAAGCATAACCCGACGTGGTGTATACAAACAAGAAGCGTATTTGTCCGAGACCGAGC

Coding sequence (CDS)

ATGGAGGAAACGGATAGCCTCTCTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTGTGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCCCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAA

Homology

[Close]

BLAST of CmoCh16G005640 vs. TrEMBL
Match: A0A0A0KX78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.6e-45
Identity = 92/100 (92.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL SIP+GGGAAVNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDEN 100

[Close]

BLAST of CmoCh16G005640 vs. TrEMBL
Match: M5XI37_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.7e-16
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MAT F RGAQTMN++ FKPIGRK FH+ SSS D++RE  + E  E K        +   W
Sbjct: 1   MATVFARGAQTMNTIVFKPIGRKHFHKNSSSADVIRETKKFEGDEAKHKNHMGENDSNLW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF-NDEN 134
           V   RTGIYYPKG E V++ I     A  +  VNWF N+EN
Sbjct: 61  VPHERTGIYYPKGQEKVMDEI--SPRAVKDMGVNWFSNNEN 99

[Close]

BLAST of CmoCh16G005640 vs. TrEMBL
Match: B9HVE7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 7.5e-16
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 25  LHLPHWEEGMATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKS 84
           L L    E  +  F RGA TMNSMFFKP+ RK +H+KSS+ D +RE ++ +++E+++NKS
Sbjct: 7   LELGKDREMSSGTFARGAHTMNSMFFKPMIRKTYHKKSSA-DTIRETMKVDAEEVRNNKS 66

Query: 85  PV-RGEETPWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
            +   +   WV   RTGIYYPKG E V+E IP   G  V+  VNWF+
Sbjct: 67  HMGETDNNGWVPHERTGIYYPKGQEKVMEGIPPAAGKDVDV-VNWFS 111

[Close]

BLAST of CmoCh16G005640 vs. TrEMBL
Match: F6HBU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MA  F RGAQT+NSMF KP+ +K +H KSSS D  R+  + E+KE   N+    G    W
Sbjct: 1   MAGVFSRGAQTVNSMFLKPVTQKTYHSKSSSFDKARKLDKEEAKE-NMNRIGENGSNW-W 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF--NDENS 135
           V DGRTGIYYPKG E V++ IP   G  ++  V+WF  ND  S
Sbjct: 61  VRDGRTGIYYPKGQEKVMDGIPTAAGKDISA-VHWFSYNDHTS 100

[Close]

BLAST of CmoCh16G005640 vs. TrEMBL
Match: A5ALF4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029772 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-14
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MA  F RGAQT+NSMF KP+ +K +H KSSS D  R+  + E+KE   N+    G    W
Sbjct: 1   MAGVFSRGAQTVNSMFLKPVTQKTYHSKSSSFDKARKLDKEEAKE-NMNRXGENGSNW-W 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF--NDENS 135
           V DGRTGIYYPKG E V++ IP   G   +  V+WF  ND  S
Sbjct: 61  VRDGRTGIYYPKGQEKVMDGIPTAAGKDXSA-VHWFSYNDHTS 100

[Close]

BLAST of CmoCh16G005640 vs. TAIR10
Match: AT1G73120.1 (AT1G73120.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-14
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 40  RGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRG---------EE 99
           RGAQTMN+MF KP+ RK  H+KS+S D++R+ V+TE          +RG           
Sbjct: 9   RGAQTMNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGETSSPA 68

Query: 100 TPWVLDGRTGIYYPKGHENVLESI-PNGGGAAVNTQVNWFN 131
           + WV    TGIYYPKG E V++ + P   G+  +  VNWF+
Sbjct: 69  SSWVPHEGTGIYYPKGQEKVMQDVPPPPAGSHADELVNWFS 109

[Close]

BLAST of CmoCh16G005640 vs. NCBI nr
Match: gi|449462499|ref|XP_004148978.1| (PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.8e-45
Identity = 92/100 (92.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL SIP+GGGAAVNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDEN 100

[Close]

BLAST of CmoCh16G005640 vs. NCBI nr
Match: gi|659102006|ref|XP_008451903.1| (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-44
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL+ IP+GGGA VNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDEN 100

[Close]

BLAST of CmoCh16G005640 vs. NCBI nr
Match: gi|747054744|ref|XP_011073594.1| (PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum])

HSP 1 Score: 102.4 bits (254), Expect = 6.1e-19
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 35  ATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPV--RGEETP 94
           + A  RGAQTMNSM+FKPI RK +HRKS SPDM+ + ++    E+K   +     G+ T 
Sbjct: 3   SAAAGRGAQTMNSMYFKPILRKAYHRKSGSPDMVSDTMKLNGDEMKHKATVATGNGDATW 62

Query: 95  WVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
           WV D RTGIYYPKG E V+E +P G G   +T +NWFN
Sbjct: 63  WVPDDRTGIYYPKGQEKVMEDVPQGSGKGFDT-INWFN 99

[Close]

BLAST of CmoCh16G005640 vs. NCBI nr
Match: gi|694377995|ref|XP_009365262.1| (PREDICTED: uncharacterized protein LOC103955110 [Pyrus x bretschneideri])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKS-NKSPVRGEETP 93
           MAT F RGAQTMNS+ FKP+ RKGFH++SSS DM+RE V++E  E K+ N+     +   
Sbjct: 1   MATVFARGAQTMNSVVFKPMSRKGFHKQSSSADMVRETVKSEGDEAKNKNQMGENNDNNI 60

Query: 94  WVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
           WV   +TGIYYPKG E VL+ I    G+  +  VNWF+
Sbjct: 61  WVPHEKTGIYYPKGQEKVLDEI--SPGSVKDMGVNWFS 96

[Close]

BLAST of CmoCh16G005640 vs. NCBI nr
Match: gi|764605490|ref|XP_011466984.1| (PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 53/105 (50.48%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 29  HWEEGMATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRG 88
           H  + MAT F RGAQTMN+MFFKP GRK FH+KS+S DM+RE  + E  E+K+      G
Sbjct: 19  HSGKEMATVFARGAQTMNTMFFKPAGRKAFHKKSTSADMIRETRKFEGDEMKNKSHKGMG 78

Query: 89  EET----PWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF 130
            E      WV   RTGIYYPKG E V+  I    G  +   VNWF
Sbjct: 79  SENDGNISWVPHERTGIYYPKGQEKVMNEISPAAGRDMG--VNWF 121

The following BLAST results are available for this feature:

BLAST of CmoCh16G005640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G005640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX78_CUCSA	2.6e-45	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1	[more]
M5XI37_PRUPE	5.7e-16	50.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1	[more]
B9HVE7_POPTR	7.5e-16	47.66	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2	[more]
F6HBU3_VITVI	1.8e-14	49.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=...	[more]
A5ALF4_VITVI	4.1e-14	49.51	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029772 PE=4 SV=1	[more]

BLAST of CmoCh16G005640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73120.1	1.7e-14	41.58	unknown protein	[more]

BLAST of CmoCh16G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462499\|ref\|XP_004148978.1\|	3.8e-45	92.00	PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus]	[more]
gi\|659102006\|ref\|XP_008451903.1\|	1.4e-44	90.00	PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo]	[more]
gi\|747054744\|ref\|XP_011073594.1\|	6.1e-19	52.04	PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum]	[more]
gi\|694377995\|ref\|XP_009365262.1\|	1.5e-17	52.04	PREDICTED: uncharacterized protein LOC103955110 [Pyrus x bretschneideri]	[more]
gi\|764605490\|ref\|XP_011466984.1\|	1.5e-17	50.48	PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004926	LEA_3

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G005640.1	CmoCh16G005640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA5-type	PFAM	PF03242	LEA_3	coord: 48..109 score: 3.
None	No IPR available	PANTHER	PTHR35109	FAMILY NOT NAMED	coord: 34..133 score: 6.9
None	No IPR available	PANTHER	PTHR35109:SF2	SUBFAMILY NOT NAMED	coord: 34..133 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G005640	Cucsa.114640	Cucumber (Gy14) v1	cgycmoB0274
CmoCh16G005640	CmaCh16G005180	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G005640	Cla005468	Watermelon (97103) v1	cmowmB302
CmoCh16G005640	Csa4G055970	Cucumber (Chinese Long) v2	cmocuB325
CmoCh16G005640	MELO3C016243	Melon (DHL92) v3.5.1	cmomeB294
CmoCh16G005640	ClCG07G011230	Watermelon (Charleston Gray)	cmowcgB293
CmoCh16G005640	CSPI04G06810	Wild cucumber (PI 183967)	cmocpiB332
CmoCh16G005640	Lsi07G007640	Bottle gourd (USVL1VR-Ls)	cmolsiB314
CmoCh16G005640	Cp4.1LG14g02770	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G005640	MELO3C016243.2	Melon (DHL92) v3.6.1	cmomedB336
CmoCh16G005640	CsaV3_4G007020	Cucumber (Chinese Long) v3	cmocucB0388
CmoCh16G005640	Bhi01G002345	Wax gourd	cmowgoB0433
CmoCh16G005640	CsGy4G006750	Cucumber (Gy14) v2	cgybcmoB467
CmoCh16G005640	Carg11431	Silver-seed gourd	carcmoB0898

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G005640	Watermelon (97103) v2	cmowmbB335
CmoCh16G005640	Cucurbita moschata (Rifu)	cmocmoB288
CmoCh16G005640	Cucurbita maxima (Rimu)	cmacmoB703
CmoCh16G005640	Cucurbita pepo (Zucchini)	cmocpeB315
CmoCh16G005640	Silver-seed gourd	carcmoB0054