Cp4.1LG14g02770 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g02770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAt1g73120
LocationCp4.1LG14 : 2746342 .. 2747655 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGATAACAAGAAGAATGGCCAGAATAAATTAGATGTCCCAATCGAAAACAAGTGGACTAAAATTCCCTTTCTCAAACCCTAAAAAAGCTCCTGAAATCAATGGTTTCATTATGGGCCAGGAGGTACAGATCAAGCCCATTAGGCCCATTAGGTAAGTCAAGGCTCAGTGAAAGCAAAGCCCATTAGGCCCAATAACATGCTTTAGCTTATGGAGTATGGGAAGAGGAATTTTGAAGGTTCATTTTCACAAACCAACTCCAAGGAGTGGGCAGCACAAAAGGAGTAAATAAAAGGACAAATTCATCCCATTCTTCAGAATCTTCATAGGGATGGAGGAAATGGATAGCCTCACTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTATGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGTAAGTTCCTTCTTCAACTCGGCCATCAACTAATTTCCTTGATCTAAGATTAGAATGCTGCTAAACGAAACCAAAAACAGAAACGGAATGACTCAACTAGGTCCATTTAAAGCATGACTCGAATAATAGTCAGTTAGTTCTGTTCAAGTATGATCAATTTGATGGTTGATTTTGTCACGTTCAATCGATTAAGTTGGGGAGGGGAGATGTATAACGGCCACATACGGAATACCGATACAACACAGTACCTTCTTTATCTGATTCGGTTGAATTCTTTAGCGCAGGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCACCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGAGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAAAAGGGTGTTTAACAAAGGCCTGTTGCTCCATCCAGATAACCTTATTGCTTTTGAATTCACAAAAAGCAAATAGAGCCAGGCCCCTTTGTTGTTAAACAGATTAAATCATCAGTATCCATTTAAAAAGCAATTGTATTAAATAACCTCACTAAGTCTACAAGCCAACAACAAGCACAGAAAATTTCCCAAGATTTGTGATTGTGTTATATATGAGAACTAGAATCAACTGTACTTACAAGCATATCCCGACGTGGTGTATACAAACAAGAAGCGTATTTGTCCGAGACGAGCTGT

mRNA sequence

AGGGATAACAAGAAGAATGGCCAGAATAAATTAGATGTCCCAATCGAAAACAAGTGGACTAAAATTCCCTTTCTCAAACCCTAAAAAAGCTCCTGAAATCAATGGTTTCATTATGGGCCAGGAGGTACAGATCAAGCCCATTAGGCCCATTAGGTAAGTCAAGGCTCAGTGAAAGCAAAGCCCATTAGGCCCAATAACATGCTTTAGCTTATGGAGTATGGGAAGAGGAATTTTGAAGGTTCATTTTCACAAACCAACTCCAAGGAGTGGGCAGCACAAAAGGAGTAAATAAAAGGACAAATTCATCCCATTCTTCAGAATCTTCATAGGGATGGAGGAAATGGATAGCCTCACTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTATGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCACCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGAGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAAAAGGGTGTTTAACAAAGGCCTGTTGCTCCATCCAGATAACCTTATTGCTTTTGAATTCACAAAAAGCAAATAGAGCCAGGCCCCTTTGTTGTTAAACAGATTAAATCATCAGTATCCATTTAAAAAGCAATTGTATTAAATAACCTCACTAAGTCTACAAGCCAACAACAAGCACAGAAAATTTCCCAAGATTTGTGATTGTGTTATATATGAGAACTAGAATCAACTGTACTTACAAGCATATCCCGACGTGGTGTATACAAACAAGAAGCGTATTTGTCCGAGACGAGCTGT

Coding sequence (CDS)

ATGGAGGAAATGGATAGCCTCACTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTATGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCACCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGAGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAA

Protein sequence

MEEMDSLTFHLYIQNNQIPICSSHLHLPHWEEGMATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDENS
BLAST of Cp4.1LG14g02770 vs. TrEMBL
Match: A0A0A0KX78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.7e-45
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 34  MATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAF+RGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL SIP+GGGAAVNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDEN 100

BLAST of Cp4.1LG14g02770 vs. TrEMBL
Match: M5XI37_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.8e-16
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1

Query: 34  MATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MAT F RGAQTMN++ FKPIGRK FH+ SSS D++RE  + E  E K        +   W
Sbjct: 1   MATVFARGAQTMNTIVFKPIGRKHFHKNSSSADVIRETKKFEGDEAKHKNHMGENDSNLW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF-NDEN 134
           V   RTGIYYPKG E V++ I     A  +  VNWF N+EN
Sbjct: 61  VPHERTGIYYPKGQEKVMDEI--SPRAVKDMGVNWFSNNEN 99

BLAST of Cp4.1LG14g02770 vs. TrEMBL
Match: B9HVE7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 1

Query: 25  LHLPHWEEGMATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKS 84
           L L    E  +  F RGA TMNSMFFKP+ RK +H+KSS+ D +RE ++ +++E+++NKS
Sbjct: 7   LELGKDREMSSGTFARGAHTMNSMFFKPMIRKTYHKKSSA-DTIRETMKVDAEEVRNNKS 66

Query: 85  PV-RGEETPWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
            +   +   WV   RTGIYYPKG E V+E IP   G  V+  VNWF+
Sbjct: 67  HMGETDNNGWVPHERTGIYYPKGQEKVMEGIPPAAGKDVDV-VNWFS 111

BLAST of Cp4.1LG14g02770 vs. TrEMBL
Match: F6HBU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 1

Query: 34  MATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MA  F RGAQT+NSMF KP+ +K +H KSSS D  R+  + E+KE   N+    G    W
Sbjct: 1   MAGVFSRGAQTVNSMFLKPVTQKTYHSKSSSFDKARKLDKEEAKE-NMNRIGENGSNW-W 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF--NDENS 135
           V DGRTGIYYPKG E V++ IP   G  ++  V+WF  ND  S
Sbjct: 61  VRDGRTGIYYPKGQEKVMDGIPTAAGKDISA-VHWFSYNDHTS 100

BLAST of Cp4.1LG14g02770 vs. TrEMBL
Match: A5ALF4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029772 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-14
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1

Query: 34  MATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MA  F RGAQT+NSMF KP+ +K +H KSSS D  R+  + E+KE   N+    G    W
Sbjct: 1   MAGVFSRGAQTVNSMFLKPVTQKTYHSKSSSFDKARKLDKEEAKE-NMNRXGENGSNW-W 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF--NDENS 135
           V DGRTGIYYPKG E V++ IP   G   +  V+WF  ND  S
Sbjct: 61  VRDGRTGIYYPKGQEKVMDGIPTAAGKDXSA-VHWFSYNDHTS 100

BLAST of Cp4.1LG14g02770 vs. TAIR10
Match: AT1G73120.1 (AT1G73120.1 unknown protein)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-14
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 1

Query: 35  ATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRG------ 94
           +T   RGAQTMN+MF KP+ RK  H+KS+S D++R+ V+TE          +RG      
Sbjct: 4   STFSSRGAQTMNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGE 63

Query: 95  ---EETPWVLDGRTGIYYPKGHENVLESI-PNGGGAAVNTQVNWFN 131
                + WV    TGIYYPKG E V++ + P   G+  +  VNWF+
Sbjct: 64  TSSPASSWVPHEGTGIYYPKGQEKVMQDVPPPPAGSHADELVNWFS 109

BLAST of Cp4.1LG14g02770 vs. NCBI nr
Match: gi|449462499|ref|XP_004148978.1| (PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 34  MATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAF+RGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL SIP+GGGAAVNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDEN 100

BLAST of Cp4.1LG14g02770 vs. NCBI nr
Match: gi|659102006|ref|XP_008451903.1| (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 4.2e-44
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1

Query: 34  MATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAF+RGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL+ IP+GGGA VNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDEN 100

BLAST of Cp4.1LG14g02770 vs. NCBI nr
Match: gi|747054744|ref|XP_011073594.1| (PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum])

HSP 1 Score: 102.1 bits (253), Expect = 8.0e-19
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1

Query: 35  ATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPV--RGEETP 94
           + A  RGAQTMNSM+FKPI RK +HRKS SPDM+ + ++    E+K   +     G+ T 
Sbjct: 3   SAAAGRGAQTMNSMYFKPILRKAYHRKSGSPDMVSDTMKLNGDEMKHKATVATGNGDATW 62

Query: 95  WVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
           WV D RTGIYYPKG E V+E +P G G   +T +NWFN
Sbjct: 63  WVPDDRTGIYYPKGQEKVMEDVPQGSGKGFDT-INWFN 99

BLAST of Cp4.1LG14g02770 vs. NCBI nr
Match: gi|698538404|ref|XP_009765127.1| (PREDICTED: uncharacterized protein LOC104216709 [Nicotiana sylvestris])

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-17
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1

Query: 36  TAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN----KSPVRGEET 95
            A  RGAQ+MN M+FKPI RK +HRKS+SPDM+ + V+  ++E+KS     K+    ++ 
Sbjct: 4   AAAGRGAQSMNFMYFKPILRKAYHRKSTSPDMISDTVKLNAEEVKSKGTVMKNHSNNDDN 63

Query: 96  PWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFND 132
            WV D RTGI+YPKG E V+E +P+  G A    +NWF++
Sbjct: 64  WWVPDDRTGIFYPKGQEKVIEDVPSAAGKATYGDINWFSN 103

BLAST of Cp4.1LG14g02770 vs. NCBI nr
Match: gi|764605490|ref|XP_011466984.1| (PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 53/105 (50.48%), Postives = 63/105 (60.00%), Query Frame = 1

Query: 29  HWEEGMATAFMRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRG 88
           H  + MAT F RGAQTMN+MFFKP GRK FH+KS+S DM+RE  + E  E+K+      G
Sbjct: 19  HSGKEMATVFARGAQTMNTMFFKPAGRKAFHKKSTSADMIRETRKFEGDEMKNKSHKGMG 78

Query: 89  EET----PWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF 130
            E      WV   RTGIYYPKG E V+  I    G  +   VNWF
Sbjct: 79  SENDGNISWVPHERTGIYYPKGQEKVMNEISPAAGRDMG--VNWF 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KX78_CUCSA7.7e-4591.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1[more]
M5XI37_PRUPE9.8e-1650.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1[more]
B9HVE7_POPTR1.3e-1547.66Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2[more]
F6HBU3_VITVI1.8e-1449.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=... [more]
A5ALF4_VITVI4.1e-1449.51Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029772 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G73120.11.3e-1440.57 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449462499|ref|XP_004148978.1|1.1e-4491.00PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus][more]
gi|659102006|ref|XP_008451903.1|4.2e-4489.00PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo][more]
gi|747054744|ref|XP_011073594.1|8.0e-1952.04PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum][more]
gi|698538404|ref|XP_009765127.1|2.0e-1747.00PREDICTED: uncharacterized protein LOC104216709 [Nicotiana sylvestris][more]
gi|764605490|ref|XP_011466984.1|2.6e-1750.48PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
Vocabulary: INTERPRO
TermDefinition
IPR004926LEA_3
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006950 response to stress
biological_process GO:0006979 response to oxidative stress
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g02770.1Cp4.1LG14g02770.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004926Late embryogenesis abundant protein, LEA5-typePFAMPF03242LEA_3coord: 48..109
score: 2.
NoneNo IPR availablePANTHERPTHR35109FAMILY NOT NAMEDcoord: 34..133
score: 9.2
NoneNo IPR availablePANTHERPTHR35109:SF2SUBFAMILY NOT NAMEDcoord: 34..133
score: 9.2