Cucsa.114640 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.114640
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	At1g73120
Location	scaffold00968 : 6480 .. 7138 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAGTAAGAGCCTTCTTCAACTCACCCATCAACTAATTCTTTTCTTTTGTTTATGATTCTGTTTTTCTACAAGAAAGCAGTTTTTAAGAACATCAGAATAAGATTTGAAATATTTACTTCTATCTTCACCATTATCTTGACATTGATCTATGATCAGAAGGCTGCAGACCAAAACAAAGGACAGTCTTGGAACCAAAGTCAAATTAGGTTTCATTCAGAATACCGTTGTTAGCTGGGTTCAATTAGTACATTGTTTAAAATTGTATTAACGTGAGATGTAAAACACAACACATGGAATAACAAGACAGAGTATTACCTTGTTTTTCTGATTCTGATTCGGTTACATTCTTCGGCAGACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCACCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACCAGAGCCATGTGGGGGGTGAAGTGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTAACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAA

mRNA sequence

ATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCACCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACCAGAGCCATGTGGGGGGTGAAGTGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTAACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAA

Coding sequence (CDS)

ATGGCCACAGCATTTGTAAGAGGGGCTCACACAATGAACTCCATGTTCTTCAAACCGATTGGGCGAAAGGGCTTCCACAGGAAAAGCTCTTCACCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACCAGAGCCATGTGGGGGGTGAAGTGACTCCTTGGGTGCTCGATGGGCGAACTGGAATTTATTACCCTAAAGGCCACGAGAAGGTCCTTAACAGCATTCCCGATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAACTGGTTTAACGATGAAAACATCTAA

Protein sequence

MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPWVLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI*

Homology

[Close]

BLAST of Cucsa.114640 vs. TrEMBL
Match: A0A0A0KX78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60
           MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Cucsa.114640 vs. TrEMBL
Match: B9HVE7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 5   FVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVG-GEVTPWVLD 64
           F RGAHTMNSMFFKP+ RK +H+KSS+ D +RE ++ +++E+++N+SH+G  +   WV  
Sbjct: 20  FARGAHTMNSMFFKPMIRKTYHKKSSA-DTIRETMKVDAEEVRNNKSHMGETDNNGWVPH 79

Query: 65  GRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFN 98
            RTGIYYPKG EKV+  IP   G  V+  VNWF+
Sbjct: 80  ERTGIYYPKGQEKVMEGIPPAAGKDVDV-VNWFS 111

[Close]

BLAST of Cucsa.114640 vs. TrEMBL
Match: M5XI37_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-16
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 1


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVG-GEVTP 60
           MAT F RGA TMN++ FKPIGRK FH+ SSS D++RE  + E  E K +++H+G  +   
Sbjct: 1   MATVFARGAQTMNTIVFKPIGRKHFHKNSSSADVIRETKKFEGDEAK-HKNHMGENDSNL 60

Query: 61  WVLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWF-NDEN 101
           WV   RTGIYYPKG EKV++ I     A  +  VNWF N+EN
Sbjct: 61  WVPHERTGIYYPKGQEKVMDEI--SPRAVKDMGVNWFSNNEN 99

[Close]

BLAST of Cucsa.114640 vs. TrEMBL
Match: F6HBU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-15
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1  MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTP- 60
          MA  F RGA T+NSMF KP+ +K +H KSSS D  R   + + +E K N + +G   +  
Sbjct: 1  MAGVFSRGAQTVNSMFLKPVTQKTYHSKSSSFDKAR---KLDKEEAKENMNRIGENGSNW 60

Query: 61 WVLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFN 98
          WV DGRTGIYYPKG EKV++ IP   G  ++  V+WF+
Sbjct: 61 WVRDGRTGIYYPKGQEKVMDGIPTAAGKDISA-VHWFS 94

[Close]

BLAST of Cucsa.114640 vs. TrEMBL
Match: V4SPU5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026814mg PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.2e-15
Identity = 49/111 (44.14%), Postives = 63/111 (56.76%), Query Frame = 1


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRE-------------RVETESKELK 60
           M  +F RGA T NSMFFKPI RK F +K+SS DMMRE             R +  +  + 
Sbjct: 1   MTGSFARGAPTFNSMFFKPIMRKSFQKKASSHDMMRETSLKSNAEEGNVMRRQQMNNNVG 60

Query: 61  SNQSHVGGEVTPWVLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFND 99
            N+ + G     WV   RTGIYYPKGHEKV+  +P   G   + +VNWF++
Sbjct: 61  ENEGNCG-----WVPHERTGIYYPKGHEKVIEDVPPSAGR--DFEVNWFSE 104

[Close]

BLAST of Cucsa.114640 vs. TAIR10
Match: AT1G73120.1 (AT1G73120.1 unknown protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 1


Query: 7   RGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETE----SKELKSNQSHVG-GE----V 66
           RGA TMN+MF KP+ RK  H+KS+S D++R+ V+TE     +E+K+ +   G GE     
Sbjct: 9   RGAQTMNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGETSSPA 68

Query: 67  TPWVLDGRTGIYYPKGHEKVLNSI-PDGGGAAVNTQVNWFN 98
           + WV    TGIYYPKG EKV+  + P   G+  +  VNWF+
Sbjct: 69  SSWVPHEGTGIYYPKGQEKVMQDVPPPPAGSHADELVNWFS 109

[Close]

BLAST of Cucsa.114640 vs. NCBI nr
Match: gi|449462499|ref|XP_004148978.1| (PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.9e-52
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60
           MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI 101

[Close]

BLAST of Cucsa.114640 vs. NCBI nr
Match: gi|659102006|ref|XP_008451903.1| (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 206.8 bits (525), Expect = 1.7e-50
Identity = 97/101 (96.04%), Postives = 98/101 (97.03%), Query Frame = 1


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60
           MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDENI 102
           VLDGRTGIYYPKGHEKVL+ IPDGGGA VNTQVNWFNDENI
Sbjct: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDENI 101

[Close]

BLAST of Cucsa.114640 vs. NCBI nr
Match: gi|747054744|ref|XP_011073594.1| (PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-19
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 7  RGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHV--GGEVTPWVLDG 66
          RGA TMNSM+FKPI RK +HRKS SPDM+ + ++    E+K   +     G+ T WV D 
Sbjct: 8  RGAQTMNSMYFKPILRKAYHRKSGSPDMVSDTMKLNGDEMKHKATVATGNGDATWWVPDD 67

Query: 67 RTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFN 98
          RTGIYYPKG EKV+  +P G G   +T +NWFN
Sbjct: 68 RTGIYYPKGQEKVMEDVPQGSGKGFDT-INWFN 99

[Close]

BLAST of Cucsa.114640 vs. NCBI nr
Match: gi|764605490|ref|XP_011466984.1| (PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca])

HSP 1 Score: 102.1 bits (253), Expect = 6.1e-19
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVG------ 60
           MAT F RGA TMN+MFFKP GRK FH+KS+S DM+RE  + E  E+K N+SH G      
Sbjct: 24  MATVFARGAQTMNTMFFKPAGRKAFHKKSTSADMIRETRKFEGDEMK-NKSHKGMGSEND 83

Query: 61  GEVTPWVLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWF 97
           G ++ WV   RTGIYYPKG EKV+N I    G  +   VNWF
Sbjct: 84  GNIS-WVPHERTGIYYPKGQEKVMNEISPAAGRDMG--VNWF 121

[Close]

BLAST of Cucsa.114640 vs. NCBI nr
Match: gi|566192728|ref|XP_002315394.2| (hypothetical protein POPTR_0010s25490g [Populus trichocarpa])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1


Query: 5   FVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVG-GEVTPWVLD 64
           F RGAHTMNSMFFKP+ RK +H+KSS+ D +RE ++ +++E+++N+SH+G  +   WV  
Sbjct: 20  FARGAHTMNSMFFKPMIRKTYHKKSSA-DTIRETMKVDAEEVRNNKSHMGETDNNGWVPH 79

Query: 65  GRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFN 98
            RTGIYYPKG EKV+  IP   G  V+  VNWF+
Sbjct: 80  ERTGIYYPKGQEKVMEGIPPAAGKDVDV-VNWFS 111

The following BLAST results are available for this feature:

BLAST of Cucsa.114640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX78_CUCSA	1.3e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1	[more]
B9HVE7_POPTR	1.6e-18	53.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2	[more]
M5XI37_PRUPE	1.5e-16	51.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1	[more]
F6HBU3_VITVI	2.8e-15	47.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=...	[more]
V4SPU5_9ROSI	8.2e-15	44.14	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026814mg PE=4 SV=1	[more]

BLAST of Cucsa.114640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73120.1	1.9e-15	44.55	unknown protein	[more]

BLAST of Cucsa.114640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462499\|ref\|XP_004148978.1\|	1.9e-52	100.00	PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus]	[more]
gi\|659102006\|ref\|XP_008451903.1\|	1.7e-50	96.04	PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo]	[more]
gi\|747054744\|ref\|XP_011073594.1\|	4.6e-19	52.69	PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum]	[more]
gi\|764605490\|ref\|XP_011466984.1\|	6.1e-19	54.90	PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca]	[more]
gi\|566192728\|ref\|XP_002315394.2\|	2.3e-18	53.19	hypothetical protein POPTR_0010s25490g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.114640.1	Cucsa.114640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35109	FAMILY NOT NAMED	coord: 1..100 score: 6.4
None	No IPR available	PANTHER	PTHR35109:SF2	SUBFAMILY NOT NAMED	coord: 1..100 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.114640	Csa4G055970	Cucumber (Chinese Long) v2	cgycuB146
Cucsa.114640	MELO3C016243	Melon (DHL92) v3.5.1	cgymeB165
Cucsa.114640	ClCG07G011230	Watermelon (Charleston Gray)	cgywcgB169
Cucsa.114640	CSPI04G06810	Wild cucumber (PI 183967)	cgycpiB147
Cucsa.114640	CmaCh16G005180	Cucurbita maxima (Rimu)	cgycmaB0278
Cucsa.114640	CmoCh16G005640	Cucurbita moschata (Rifu)	cgycmoB0274
Cucsa.114640	Lsi07G007640	Bottle gourd (USVL1VR-Ls)	cgylsiB161
Cucsa.114640	Cp4.1LG14g02770	Cucurbita pepo (Zucchini)	cgycpeB0268
Cucsa.114640	MELO3C016243.2	Melon (DHL92) v3.6.1	cgymedB164
Cucsa.114640	CsaV3_4G007020	Cucumber (Chinese Long) v3	cgycucB152
Cucsa.114640	Bhi01G002345	Wax gourd	cgywgoB192
Cucsa.114640	Carg11431	Silver-seed gourd	carcgyB0731

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.114640	Cucurbita pepo (Zucchini)	cgycpeB0270
Cucsa.114640	Silver-seed gourd	carcgyB0050
Cucsa.114640	Watermelon (97103) v2	cgywmbB165
Cucsa.114640	Cucurbita maxima (Rimu)	cgycmaB0280
Cucsa.114640	Cucurbita moschata (Rifu)	cgycmoB0276