CmoCh16G005640.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G005640.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr16 : 2748616 .. 2749643 (-)
Sequence length	728

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCATCCCATTCTTCAGAATCTTCATAGGGATGGAGGAAACGGATAGCCTCTCTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTGTGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGTAAGTTCCTTCTTCAACTCAGCCATCAAGTACTTTCCTTGATCTAAGATTAGAATGCTGCTAAACGAAACCAAAAACAGAAACGGAATGACTCAACTAGGTCCATTTAAAGCATGACTGTTGGTCGTATAAAATCGAATAATAGTCAGTTAGTTCTGTTCATGTATGATCAATTTGATGGTTGATTTTGTCACATTCAATCGATTAAGTCAGGGAGGGGAGATGTATAACGGCCACATACGGAATATCGATACAACACAGTACCTTGTTTATCTGATTCGGTTGAATTCTTTAGCGCAGGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCCCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAAAAGGGTGTTTAACAAAGGCCTGTTGCTCCATCCACATAACCTTATTGCTTTTGAATTCACAAAAAGCAAATAGAGCCAGGCCCCTTTGTTGTTAAACAGATTAAAACAACAGTATCCATTTAAAAAGCAATTGTATTAAATAACCTCACTAAGTCTACAAGCCAACAACAAGCACAGAAAATTTCCCAAGATTTGTGATTGTGTTATATATGAGAACTAGAATCAACTGTACTTACAAGCATAACCCGACGTGGTGTATACAAACAAGAAGCGTATTTGTCCGAGACCGAGC

mRNA sequence

ATTCATCCCATTCTTCAGAATCTTCATAGGGATGGAGGAAACGGATAGCCTCTCTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTGTGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCCCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAAAAGGGTGTTTAACAAAGGCCTGTTGCTCCATCCACATAACCTTATTGCTTTTGAATTCACAAAAAGCAAATAGAGCCAGGCCCCTTTGTTGTTAAACAGATTAAAACAACAGTATCCATTTAAAAAGCAATTGTATTAAATAACCTCACTAAGTCTACAAGCCAACAACAAGCACAGAAAATTTCCCAAGATTTGTGATTGTGTTATATATGAGAACTAGAATCAACTGTACTTACAAGCATAACCCGACGTGGTGTATACAAACAAGAAGCGTATTTGTCCGAGACCGAGC

Coding sequence (CDS)

ATGGAGGAAACGGATAGCCTCTCTTTTCACCTATATATACAAAACAACCAAATTCCCATTTGTTCATCCCATCTTCACTTACCTCATTGGGAGGAAGGCATGGCCACTGCATTTGTGAGAGGGGCTCAGACGATGAACTCCATGTTCTTCAAGCCGATCGGGCGGAAGGGCTTCCACAGAAAAAGCTCTTCCCCAGATATGATGAGGGAGAGAGTTGAAACAGAAAGCAAGGAACTGAAGAGCAACAAGAGCCCTGTGAGGGGTGAGGAAACTCCATGGGTGCTTGATGGGCGAACTGGAATTTATTATCCTAAAGGCCACGAGAATGTCCTGGAGAGCATTCCCAATGGCGGTGGGGCTGCAGTTAACACCCAGGTCAATTGGTTTAATGACGAAAACAGTTAA

Homology

[Close]

BLAST of CmoCh16G005640.1 vs. TrEMBL
Match: A0A0A0KX78_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.6e-45
Identity = 92/100 (92.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL SIP+GGGAAVNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDEN 100

[Close]

BLAST of CmoCh16G005640.1 vs. TrEMBL
Match: M5XI37_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.7e-16
Identity = 51/101 (50.50%), Postives = 62/101 (61.39%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MAT F RGAQTMN++ FKPIGRK FH+ SSS D++RE  + E  E K        +   W
Sbjct: 1   MATVFARGAQTMNTIVFKPIGRKHFHKNSSSADVIRETKKFEGDEAKHKNHMGENDSNLW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF-NDEN 134
           V   RTGIYYPKG E V++ I     A  +  VNWF N+EN
Sbjct: 61  VPHERTGIYYPKGQEKVMDEI--SPRAVKDMGVNWFSNNEN 99

[Close]

BLAST of CmoCh16G005640.1 vs. TrEMBL
Match: B9HVE7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 7.5e-16
Identity = 51/107 (47.66%), Postives = 70/107 (65.42%), Query Frame = 1


Query: 25  LHLPHWEEGMATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKS 84
           L L    E  +  F RGA TMNSMFFKP+ RK +H+KSS+ D +RE ++ +++E+++NKS
Sbjct: 7   LELGKDREMSSGTFARGAHTMNSMFFKPMIRKTYHKKSSA-DTIRETMKVDAEEVRNNKS 66

Query: 85  PV-RGEETPWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
            +   +   WV   RTGIYYPKG E V+E IP   G  V+  VNWF+
Sbjct: 67  HMGETDNNGWVPHERTGIYYPKGQEKVMEGIPPAAGKDVDV-VNWFS 111

[Close]

BLAST of CmoCh16G005640.1 vs. TrEMBL
Match: F6HBU3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 51/103 (49.51%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MA  F RGAQT+NSMF KP+ +K +H KSSS D  R+  + E+KE   N+    G    W
Sbjct: 1   MAGVFSRGAQTVNSMFLKPVTQKTYHSKSSSFDKARKLDKEEAKE-NMNRIGENGSNW-W 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF--NDENS 135
           V DGRTGIYYPKG E V++ IP   G  ++  V+WF  ND  S
Sbjct: 61  VRDGRTGIYYPKGQEKVMDGIPTAAGKDISA-VHWFSYNDHTS 100

[Close]

BLAST of CmoCh16G005640.1 vs. TrEMBL
Match: A5ALF4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029772 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.1e-14
Identity = 51/103 (49.51%), Postives = 63/103 (61.17%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MA  F RGAQT+NSMF KP+ +K +H KSSS D  R+  + E+KE   N+    G    W
Sbjct: 1   MAGVFSRGAQTVNSMFLKPVTQKTYHSKSSSFDKARKLDKEEAKE-NMNRXGENGSNW-W 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF--NDENS 135
           V DGRTGIYYPKG E V++ IP   G   +  V+WF  ND  S
Sbjct: 61  VRDGRTGIYYPKGQEKVMDGIPTAAGKDXSA-VHWFSYNDHTS 100

[Close]

BLAST of CmoCh16G005640.1 vs. TAIR10
Match: AT1G73120.1 (AT1G73120.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-14
Identity = 42/101 (41.58%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 40  RGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRG---------EE 99
           RGAQTMN+MF KP+ RK  H+KS+S D++R+ V+TE          +RG           
Sbjct: 9   RGAQTMNTMFVKPMLRKSIHKKSASHDIVRDTVKTEGSSSGEEVKTMRGFYGAGETSSPA 68

Query: 100 TPWVLDGRTGIYYPKGHENVLESI-PNGGGAAVNTQVNWFN 131
           + WV    TGIYYPKG E V++ + P   G+  +  VNWF+
Sbjct: 69  SSWVPHEGTGIYYPKGQEKVMQDVPPPPAGSHADELVNWFS 109

[Close]

BLAST of CmoCh16G005640.1 vs. NCBI nr
Match: gi|449462499|ref|XP_004148978.1| (PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus])

HSP 1 Score: 189.5 bits (480), Expect = 3.8e-45
Identity = 92/100 (92.00%), Postives = 94/100 (94.00%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEVTPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL SIP+GGGAAVNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLNSIPDGGGAAVNTQVNWFNDEN 100

[Close]

BLAST of CmoCh16G005640.1 vs. NCBI nr
Match: gi|659102006|ref|XP_008451903.1| (PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-44
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRGEETPW 93
           MATAFVRGA TMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSN+S V GE TPW
Sbjct: 1   MATAFVRGAHTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNQSHVGGEATPW 60

Query: 94  VLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFNDEN 134
           VLDGRTGIYYPKGHE VL+ IP+GGGA VNTQVNWFNDEN
Sbjct: 61  VLDGRTGIYYPKGHEKVLDGIPDGGGATVNTQVNWFNDEN 100

[Close]

BLAST of CmoCh16G005640.1 vs. NCBI nr
Match: gi|747054744|ref|XP_011073594.1| (PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum])

HSP 1 Score: 102.4 bits (254), Expect = 6.1e-19
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 35  ATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPV--RGEETP 94
           + A  RGAQTMNSM+FKPI RK +HRKS SPDM+ + ++    E+K   +     G+ T 
Sbjct: 3   SAAAGRGAQTMNSMYFKPILRKAYHRKSGSPDMVSDTMKLNGDEMKHKATVATGNGDATW 62

Query: 95  WVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
           WV D RTGIYYPKG E V+E +P G G   +T +NWFN
Sbjct: 63  WVPDDRTGIYYPKGQEKVMEDVPQGSGKGFDT-INWFN 99

[Close]

BLAST of CmoCh16G005640.1 vs. NCBI nr
Match: gi|694377995|ref|XP_009365262.1| (PREDICTED: uncharacterized protein LOC103955110 [Pyrus x bretschneideri])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 1


Query: 34  MATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKS-NKSPVRGEETP 93
           MAT F RGAQTMNS+ FKP+ RKGFH++SSS DM+RE V++E  E K+ N+     +   
Sbjct: 1   MATVFARGAQTMNSVVFKPMSRKGFHKQSSSADMVRETVKSEGDEAKNKNQMGENNDNNI 60

Query: 94  WVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWFN 131
           WV   +TGIYYPKG E VL+ I    G+  +  VNWF+
Sbjct: 61  WVPHEKTGIYYPKGQEKVLDEI--SPGSVKDMGVNWFS 96

[Close]

BLAST of CmoCh16G005640.1 vs. NCBI nr
Match: gi|764605490|ref|XP_011466984.1| (PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca])

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 53/105 (50.48%), Postives = 63/105 (60.00%), Query Frame = 1


Query: 29  HWEEGMATAFVRGAQTMNSMFFKPIGRKGFHRKSSSPDMMRERVETESKELKSNKSPVRG 88
           H  + MAT F RGAQTMN+MFFKP GRK FH+KS+S DM+RE  + E  E+K+      G
Sbjct: 19  HSGKEMATVFARGAQTMNTMFFKPAGRKAFHKKSTSADMIRETRKFEGDEMKNKSHKGMG 78

Query: 89  EET----PWVLDGRTGIYYPKGHENVLESIPNGGGAAVNTQVNWF 130
            E      WV   RTGIYYPKG E V+  I    G  +   VNWF
Sbjct: 79  SENDGNISWVPHERTGIYYPKGQEKVMNEISPAAGRDMG--VNWF 121

The following BLAST results are available for this feature:

BLAST of CmoCh16G005640.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G005640.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX78_CUCSA	2.6e-45	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G055970 PE=4 SV=1	[more]
M5XI37_PRUPE	5.7e-16	50.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023773mg PE=4 SV=1	[more]
B9HVE7_POPTR	7.5e-16	47.66	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2	[more]
F6HBU3_VITVI	1.8e-14	49.51	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01910 PE=4 SV=...	[more]
A5ALF4_VITVI	4.1e-14	49.51	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029772 PE=4 SV=1	[more]

BLAST of CmoCh16G005640.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73120.1	1.7e-14	41.58	unknown protein	[more]

BLAST of CmoCh16G005640.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462499\|ref\|XP_004148978.1\|	3.8e-45	92.00	PREDICTED: uncharacterized protein LOC101205531 [Cucumis sativus]	[more]
gi\|659102006\|ref\|XP_008451903.1\|	1.4e-44	90.00	PREDICTED: uncharacterized protein LOC103493056 [Cucumis melo]	[more]
gi\|747054744\|ref\|XP_011073594.1\|	6.1e-19	52.04	PREDICTED: uncharacterized protein LOC105158508 [Sesamum indicum]	[more]
gi\|694377995\|ref\|XP_009365262.1\|	1.5e-17	52.04	PREDICTED: uncharacterized protein LOC103955110 [Pyrus x bretschneideri]	[more]
gi\|764605490\|ref\|XP_011466984.1\|	1.5e-17	50.48	PREDICTED: uncharacterized protein LOC105352226 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004926	LEA_3

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh16G005640	CmoCh16G005640	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh16G005640.1	CmoCh16G005640.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G005640.1.three_prime_UTR.1	CmoCh16G005640.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G005640.1.CDS.2	CmoCh16G005640.1.CDS.2	CDS
CmoCh16G005640.1.CDS.1	CmoCh16G005640.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G005640.1.five_prime_UTR.1	CmoCh16G005640.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G005640.1.exon.2	CmoCh16G005640.1.exon.2	exon
CmoCh16G005640.1.exon.1	CmoCh16G005640.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA5-type	PFAM	PF03242	LEA_3	coord: 48..109 score: 3.
None	No IPR available	PANTHER	PTHR35109	FAMILY NOT NAMED	coord: 34..133 score: 6.9
None	No IPR available	PANTHER	PTHR35109:SF2	SUBFAMILY NOT NAMED	coord: 34..133 score: 6.9