CmoCh16G004650 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G004650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquitin domain-containing protein
LocationCmo_Chr16 : 2228534 .. 2232356 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTTTATGTAATACTCCCTGAAAGTTTATATTCTCTCAGGCCTCATCTATCCTTCTATCTGCCTGTGAATTGGAGCTTCTGTTCTAGCGAGACGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGGGACGGTGAGGTTCACTTCGCTTCTCTGGTTCTTTTTTTTTTTTTTTCTAAATTCTCGGCGAAATTTTGTTCTATGTTCGTCTGTTGACTTTGGCTACTGGGAATATTAGATGATAATCGATGCAAGTTGATTTGCTGTGGCAGGGAGAGCGGGAGTGTTGGTCTAGTAGTATTGATTTCTCGGTAATGAATTGGATTGCTGTTGATTTTATTTATTCTGTCATAGCGTTGCTTGATGGTGTTCGTAAGTTTGTCCTGTGTGTTGTGACTGTGACGGGAGATTCTTGAACTTCACTTGCGATTATCAGATTATGTAGTGGTGCATTAATTAGAATGAGCAGCTCTCTGATTTGGAGTATTGCACTAGTTCATGGAAATAGTTTTGTTATTCATTCATTTTGAGAGTGACGGGTTTTTGAAGGTTGCTTAGAGTTATTGCTCACTGGTTCATTTGACATTTCATGCTGGTGATTCAAATTCCACTAGAGATTTATGCTTTCAGATTAATGAAGTTATCAAGACCTGTAGTCGGAATCTTGGCATATTTGTTGCTTAACTAGTTTCGCATTCAGAGAGTTCTATTAGATTAATTGTGAAGCTGTGATGTTAGCATTCCAGGACTAAAATTTCAGCAACTAACACTTAAATGGACAGTATCTTATATTTCTGCTTTATACTTGTAACACCCCAGATCGCTAGCAGATATTGTTTTCTTTGGGCTTTCCCTTTCGAGCTTCCCCTCAAGACTTTAAAATACGTCTACTAGGAGAAGGTTTTCACACCCTTATAAATGGTGGTTTGTTCTCCTTCCCAACCAATGTGGGACATCACAATACTGCAATCAAAAGAAATAATAGCGTTTTTAGAGGGATTGAGAGCTTTTTGATGTCTGGTCCCTTGTGAGATTGAATGTCTCTCTTTTGGCAGCAGTTACAAGTTTTTTTTTTTTTGTAATAATTTTTAGAGGGATTGAGAGAGAGTCTTTTGATGATTGGTCCATTGTGAGATTTAATGTCTCTCTTTAGGTGGCGGTGACGAGTTTCTTTCGTAATAGTTTTTAGATGGGTCGAGAGGAAGTCGTCTTCTGATGTTTGGTCCATTAAAAGATTTAATGTCTCTCTTTGGGCGGCAGAGACGAGCTCCTTTTGTAATTACTCTCTTTATGGGCTTGTTTTGTGGAGAGTTGATTTTCATTTGACTCTTTTCTACATGAAAAATGTCTAAGGTAATAGTTGTACGTGAAAATTCCTCCCTTTGCCTCTTTATTCTCATAACAAATACTTAAAAATGACAGGAATTGTTGATCTTCTTGTTTGTTTTTAAAGAAAACACTTGAGGATACTGAAATGGAAAAGAAGCACTTCAAAAGAGTGAAGAAAAAGATAGAGAAAATAGCAAAATTTTAGGACGAACTTTTGTAATTCTCCTTGTGTTGTTTATAGTTCTGAATGTCTAAGGATTTCATTTAAACTTTTCAAGACTACCATGCTGCTAGCCTTGAATCTGGTTTTGTTGGTTTATACTTGATTCAAGCCATTGAGATATGACTGAAATTGTTTCTTTATGTAGGTTCCATAAAGAAAATACGCAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTTGTGCAACTGCGGGAGGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGAAAAGGTAGGCCTGTCTCTAAATATTTTTTGCCAGTGTGTTTTATTAGAGGTTAGCTTATCAAAAAAGTTACTAAGAGTCTATTATTACATTATTGTATCATACTACGGAATCACGAGTCTCCACTATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCAAGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACTAGTGGAGATAGTATTCCTCACTTATAAACTCATGATCTTCCACTAAATTAATCAACGTGGGACTTACTCCCAATAATCCTCAACACATTCAATCCATGGAAAAGGCGACTGGTGTAGTTGCAGGGGACCCAATAAAGGTTGGGATGAATTATCCCTTGGAAACAACTATGATATCTTTCACAGCTATAAGAACAGTTAATCAATTTCCAATTTCTAGGATCCTTCGATTGTTTTTTCCTGTTTCCTAATAAACTAAGTTCTTCGGTCTGGAGAGACGAGGTTTCCTATTTTTATGCCGAATCCAGATTGCCATTGCCAACATCGAAGAATCTGGTTCGATGTGTAGGCTTCTCCAATTGTTTCATTTTGCTTTCTGGGAAGAAATGTGATATAGGGAGTTTTTGGTATAATTGATTCATGTTTTTTTATTACATGGTTATTTATTAATTATGCTATGGATGTTGGCTCTTGGATGTTGACATCTTTCAAATCAATTTAAATTGCGAGTAGAGATTTATTTTGAGGACTCTTTGTGAGAGCTAAGGCGACACCAAAATGATTAACTTCTTTTTCTCAGGCTTGGAGCCATTATGTTATATTCTTACCTAGGATTATGGAACGTGATTAACTAGAAGTCTTATTGTCCACTTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATGCCGATGAAGACAGTATTCCCCACTTATAAACCCATAATCTTCCACTAAATTAACCAATATGGGACTCATTCCCAACACCTTAATCGAGGCTCGACTCCTTTCTCTGGGACCCTCGAACAAAGTACACCCTTTGTTTGACACTCTAGTCACTTTGGACTACACTTTCGAGACTCACAATCTATTGACATGGTTAAGTTTAGGGCATGACTTTGCTTTGAGCTTTCTCAAAATGCCTCGTACCAATGGAGATAGTATTCCCCACTTATAAACCTATGATCTTCCACTAAATTAACCAATATGGACTCACTCCCAATAATCCTCAAAAATATCTATATGAAGGTTTCTAATACACTGCACAAATTTCTGTTAATTTTCATTTTTCACTTTCATTAATTGACTTTAGTCGATAAGGAGCTTTGGGTCTAGCATTTCAGGTGCGGATTGTTTCAAAATTTGAATATTGAACTGATGTAGCATTTTGTACCAAAAATCAAATGAGAAAAAGATGATTGACCATATACGAGCCTTGCAGTAAAGAGAACACTAGTATAATTGAAAGGGCATCTTTAGGCCATGACATACCCCCTCCAAGTTAACATCGACTTCAACCTTCTTATACATTCCTTTTTCCTTTACTAACTGTTTTTTTGTTACCAGAGATTTGGGACGCACTACGAGCAGCTGCCGAAGCCGAGCTTTCCCTTGCGCAAGCCATCATAGACAGTGCAGGGGTAATCATCCAAAATGCAGATTTGACAATCTGTTACGACGAGAGAGGTCCATACCATTGCTTCATTTAAAAAATTATGATACATTATTTTAGTTTAGTCATCGGTATCGTTTTACCATCGCTCGATCTTACCGCAGGCGCAAAATATGAACTACCCAACTATGTTTTGAGTGAGCCAACCAATTTGATTCGTGACAGTTCATAAAGAGGTAACCATAACTTCATTTCTGCTCTAGCTGAAATCACACAGGTATGAATAATGCTTGCTTTTGAAAGGTTTCATTTTGGTCCTTAATACAAACATACATTATTCATTCCTCTAACTTCTCCTGTAAGTTGCTTTACTCTAAATGGACAAATTGCAACATCCCTTTTC

mRNA sequence

GTGTTTATGTAATACTCCCTGAAAGTTTATATTCTCTCAGGCCTCATCTATCCTTCTATCTGCCTGTGAATTGGAGCTTCTGTTCTAGCGAGACGCAATGGGCTGTGCTGGATCGTCGCAGACCAACGGGGACGGTTCCATAAAGAAAATACGCAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTTGTGCAACTGCGGGAGGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGAAAAGAGATTTGGGACGCACTACGAGCAGCTGCCGAAGCCGAGCTTTCCCTTGCGCAAGCCATCATAGACAGTGCAGGGGTAATCATCCAAAATGCAGATTTGACAATCTGTTACGACGAGAGAGGCGCAAAATATGAACTACCCAACTATGTTTTGAGTGAGCCAACCAATTTGATTCGTGACAGTTCATAAAGAGGTAACCATAACTTCATTTCTGCTCTAGCTGAAATCACACAGGTATGAATAATGCTTGCTTTTGAAAGGTTTCATTTTGGTCCTTAATACAAACATACATTATTCATTCCTCTAACTTCTCCTGTAAGTTGCTTTACTCTAAATGGACAAATTGCAACATCCCTTTTC

Coding sequence (CDS)

ATGGGCTGTGCTGGATCGTCGCAGACCAACGGGGACGGTTCCATAAAGAAAATACGCAAGCCAAAATCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTTGTGCAACTGCGGGAGGAGTTCTGGGACACTGCACCTCACTATGGTGGCCGAAAAGAGATTTGGGACGCACTACGAGCAGCTGCCGAAGCCGAGCTTTCCCTTGCGCAAGCCATCATAGACAGTGCAGGGGTAATCATCCAAAATGCAGATTTGACAATCTGTTACGACGAGAGAGGCGCAAAATATGAACTACCCAACTATGTTTTGAGTGAGCCAACCAATTTGATTCGTGACAGTTCATAA
Homology
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BLAST of CmoCh16G004650 vs. Swiss-Prot
Match: UBTD2_DANRE (Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.5e-23
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 1 

Query: 4   AGSSQTNGDGS--------IKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEI 63
           +GS   N DG+          K  KPK WK   P+T  QL   R+EFWDTAP + GRKEI
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEI 71

Query: 64  WDALRAAAEA----ELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLI 116
           WDAL+AAA+A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y LS P N+I
Sbjct: 72  WDALKAAAQAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMI 131

[Close]
BLAST of CmoCh16G004650 vs. Swiss-Prot
Match: UBTD2_MOUSE (Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-22
Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 1 

Query: 4   AGSSQTNGDGS---------IKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKE 63
           +GS   N DG+         +KK  KPK WK   P+T  QL   R+EFWDTAP + GRKE
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKK-EKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKE 71

Query: 64  IWDALRAAAEA----ELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNL 116
           IWDAL+AAA A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L+ P N+
Sbjct: 72  IWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINM 131

[Close]
BLAST of CmoCh16G004650 vs. Swiss-Prot
Match: UBTD1_DANRE (Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-22
Identity = 63/132 (47.73%), Postives = 79/132 (59.85%), Query Frame = 1 

Query: 2   GCAGS--SQTNGDGS------------IKKIRKPKSWKHPQPITRSQLVQLREEFWDTAP 61
           GC G   ++T G GS            +KK  KPK WK   P+T  QL   R+EFWDTAP
Sbjct: 3   GCVGRERAETRGRGSRTQRKRGGRNEPLKK-DKPK-WKSDYPMTEGQLRSKRDEFWDTAP 62

Query: 62  HYGGRKEIWDALRAAAEA----ELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYV 116
            + GRKEIWDAL+AAA A    +  LAQAI+D A + + +  LT CYDE G +Y+LP Y 
Sbjct: 63  AFEGRKEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYC 122

[Close]
BLAST of CmoCh16G004650 vs. Swiss-Prot
Match: UBTD1_XENLA (Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-22
Identity = 61/125 (48.80%), Postives = 77/125 (61.60%), Query Frame = 1 

Query: 4   AGSSQTNGDGS---------IKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKE 63
           +GS   N DG+         +KK  KPK WK   P+T  QL   R+EFWDTAP + GRKE
Sbjct: 12  SGSLNENSDGTGVALGRNQPLKK-DKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKE 71

Query: 64  IWDALRAAAEA----ELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNL 116
           IWDAL+AAA A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L+ P N+
Sbjct: 72  IWDALKAAAHAFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLAPPINM 131

[Close]
BLAST of CmoCh16G004650 vs. Swiss-Prot
Match: UBTD2_BOVIN (Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-22
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 1 

Query: 5   GSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALRAAAE 64
           G+    G     K  KPK WK   P+T  QL   R+EFWDTAP + GRKEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 65  A----ELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           A    +  LAQAIID A + + +  LT CYDE G +Y+LP Y L+ P N+I + S
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMIEEKS 134

[Close]
BLAST of CmoCh16G004650 vs. TrEMBL
Match: A0A0A0KVJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083480 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-57
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQT  DGSIKKIRKPKSWKHPQPITRSQL QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of CmoCh16G004650 vs. TrEMBL
Match: M5X7X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013589mg PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 6.0e-54
Identity = 100/114 (87.72%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQT GDG++KK+RKPK WKHPQP+T+SQL+QLREEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTKGDGALKKVRKPKPWKHPQPLTKSQLLQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AAAEA+LSLAQAI+DSAGVI+Q+ADLTICYDERGAKYELP YVLSEPTNLIR+S
Sbjct: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRES 114

[Close]
BLAST of CmoCh16G004650 vs. TrEMBL
Match: A0A061FG33_THECC (Ubiquitin domain-containing protein OS=Theobroma cacao GN=TCM_032011 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.9e-53
Identity = 99/114 (86.84%), Postives = 109/114 (95.61%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGS+   GDG++KKIRKPK WKHPQPIT+SQLVQ+REEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSTPAKGDGNVKKIRKPKPWKHPQPITKSQLVQMREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AAAEA+L+LAQAI+DSAGVI+QNADLTICYDERGAKYELP YVLSEPTNLI+DS
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQNADLTICYDERGAKYELPKYVLSEPTNLIQDS 114

[Close]
BLAST of CmoCh16G004650 vs. TrEMBL
Match: B9I1R9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10900g PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.6e-53
Identity = 98/114 (85.96%), Postives = 109/114 (95.61%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQ   DG++KKIRKPK WKHPQPIT+SQL+Q+R+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKSDGNVKKIRKPKPWKHPQPITKSQLMQMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AAA+AELSLAQAI+DSAGVI+QNADLTICYDERGAKYELP YVLSEPTNLIR++
Sbjct: 61  AAADAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPKYVLSEPTNLIRET 114

[Close]
BLAST of CmoCh16G004650 vs. TrEMBL
Match: W9RUD2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002639 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.6e-53
Identity = 99/114 (86.84%), Postives = 109/114 (95.61%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQ  GDG++KKIRKPK WKHPQPIT++QL+QLREEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGTVKKIRKPKPWKHPQPITKTQLMQLREEFWDTAPHYGGTKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AAAEA+LSLAQAI+DSAGVI+Q+ADLTICYDERGAKYELP YVLSEPTNLI+DS
Sbjct: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIQDS 114

[Close]
BLAST of CmoCh16G004650 vs. TAIR10
Match: AT1G53400.1 (AT1G53400.1 Ubiquitin domain-containing protein)

HSP 1 Score: 201.8 bits (512), Expect = 2.2e-52
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGS+Q+  DGS+KKIRKPK WKH QPIT+++L++LREEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNL 111
           AAAEA++SLAQAI+DSAGVI+QN DLT+CYDERGAKYELP YVLSEPTNL
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110

[Close]
BLAST of CmoCh16G004650 vs. TAIR10
Match: AT5G45740.1 (AT5G45740.1 Ubiquitin domain-containing protein)

HSP 1 Score: 179.1 bits (453), Expect = 1.6e-45
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIK--KIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDA 60
           MGC GSSQ   +G  K  KI KPK W H +PITR+QL  +REEFWDT+PHYGG++EIW+A
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query: 61  LRAAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRD 114
           LRAAAEA+L LAQ I+DSAGVI+QN DLT+C+DERGA+YELP YVLSEPTNLIR+
Sbjct: 61  LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLIRE 115

[Close]
BLAST of CmoCh16G004650 vs. TAIR10
Match: AT1G16960.1 (AT1G16960.1 Ubiquitin domain-containing protein)

HSP 1 Score: 174.1 bits (440), Expect = 5.0e-44
Identity = 81/112 (72.32%), Postives = 99/112 (88.39%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGC+ SS+T  +G  +KIR+PK+WKHPQPI+R +L Q+REEFWDTAPHYGG+KEIWDALR
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 60

Query: 61  AAAEA-ELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLI 112
           AAAE  +LSLAQ I++SAGVI+QN DLTICYDE+G+KYELP YVL +P+NLI
Sbjct: 61  AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

[Close]
BLAST of CmoCh16G004650 vs. NCBI nr
Match: gi|449438909|ref|XP_004137230.1| (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 4.8e-57
Identity = 109/115 (94.78%), Postives = 112/115 (97.39%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQT  DGSIKKIRKPKSWKHPQPITRSQL QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 116
           AAAEAELSLAQAI+DSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIRDSS
Sbjct: 61  AAAEAELSLAQAIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDSS 115

[Close]
BLAST of CmoCh16G004650 vs. NCBI nr
Match: gi|659101695|ref|XP_008451743.1| (PREDICTED: ubiquitin domain-containing protein 2-like [Cucumis melo])

HSP 1 Score: 223.0 bits (567), Expect = 2.7e-55
Identity = 106/114 (92.98%), Postives = 109/114 (95.61%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSS T  DGSIKKIRKPKSWKHPQPITRSQL QLR+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSLTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AAAEAELSLAQ I+DSAGVI+QNADLTICYDERGAKYELPNYVLSEPTNLIRDS
Sbjct: 61  AAAEAELSLAQVIVDSAGVIVQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 114

[Close]
BLAST of CmoCh16G004650 vs. NCBI nr
Match: gi|595904566|ref|XP_007213986.1| (hypothetical protein PRUPE_ppa013589mg [Prunus persica])

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-54
Identity = 100/114 (87.72%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQT GDG++KK+RKPK WKHPQP+T+SQL+QLREEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTKGDGALKKVRKPKPWKHPQPLTKSQLLQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AAAEA+LSLAQAI+DSAGVI+Q+ADLTICYDERGAKYELP YVLSEPTNLIR+S
Sbjct: 61  AAAEADLSLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLIRES 114

[Close]
BLAST of CmoCh16G004650 vs. NCBI nr
Match: gi|694411304|ref|XP_009334023.1| (PREDICTED: ubiquitin domain-containing protein 1-like [Pyrus x bretschneideri])

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-53
Identity = 98/114 (85.96%), Postives = 111/114 (97.37%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQT GDG++KK+RKPK WKHPQP+T+SQL+QLREEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQTKGDGTLKKVRKPKPWKHPQPLTKSQLLQLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AA+EA++SLAQAI+DSAGVI+QNADLTICYDERGAKYELP YVLSEPTNLI++S
Sbjct: 61  AASEADISLAQAIVDSAGVIVQNADLTICYDERGAKYELPKYVLSEPTNLIQES 114

[Close]
BLAST of CmoCh16G004650 vs. NCBI nr
Match: gi|590610771|ref|XP_007021914.1| (Ubiquitin domain-containing protein [Theobroma cacao])

HSP 1 Score: 215.3 bits (547), Expect = 5.5e-53
Identity = 99/114 (86.84%), Postives = 109/114 (95.61%), Query Frame = 1 

Query: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGRKEIWDALR 60
           MGCAGS+   GDG++KKIRKPK WKHPQPIT+SQLVQ+REEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSTPAKGDGNVKKIRKPKPWKHPQPITKSQLVQMREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEAELSLAQAIIDSAGVIIQNADLTICYDERGAKYELPNYVLSEPTNLIRDS 115
           AAAEA+L+LAQAI+DSAGVI+QNADLTICYDERGAKYELP YVLSEPTNLI+DS
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQNADLTICYDERGAKYELPKYVLSEPTNLIQDS 114

The following BLAST results are available for this feature:
BLAST of CmoCh16G004650 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UBTD2_DANRE3.5e-2349.19Ubiquitin domain-containing protein 2 OS=Danio rerio GN=ubtd2 PE=2 SV=1[more]
UBTD2_MOUSE1.3e-2248.80Ubiquitin domain-containing protein 2 OS=Mus musculus GN=Ubtd2 PE=2 SV=1[more]
UBTD1_DANRE1.7e-2247.73Ubiquitin domain-containing protein 1 OS=Danio rerio GN=ubtd1 PE=2 SV=1[more]
UBTD1_XENLA2.3e-2248.80Ubiquitin domain-containing protein 1 OS=Xenopus laevis GN=ubtd1 PE=2 SV=1[more]
UBTD2_BOVIN3.0e-2249.57Ubiquitin domain-containing protein 2 OS=Bos taurus GN=UBTD2 PE=2 SV=1[more]
BLAST of CmoCh16G004650 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVJ9_CUCSA3.4e-5794.78Uncharacterized protein OS=Cucumis sativus GN=Csa_4G083480 PE=4 SV=1[more]
M5X7X0_PRUPE6.0e-5487.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013589mg PE=4 SV=1[more]
A0A061FG33_THECC3.9e-5386.84Ubiquitin domain-containing protein OS=Theobroma cacao GN=TCM_032011 PE=4 SV=1[more]
B9I1R9_POPTR8.6e-5385.96Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10900g PE=4 SV=1[more]
W9RUD2_9ROSA8.6e-5386.84Uncharacterized protein OS=Morus notabilis GN=L484_002639 PE=4 SV=1[more]
BLAST of CmoCh16G004650 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G53400.12.2e-5282.73 Ubiquitin domain-containing protein[more]
AT5G45740.11.6e-4571.30 Ubiquitin domain-containing protein[more]
AT1G16960.15.0e-4472.32 Ubiquitin domain-containing protein[more]
BLAST of CmoCh16G004650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449438909|ref|XP_004137230.1|4.8e-5794.78PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus][more]
gi|659101695|ref|XP_008451743.1|2.7e-5592.98PREDICTED: ubiquitin domain-containing protein 2-like [Cucumis melo][more]
gi|595904566|ref|XP_007213986.1|8.5e-5487.72hypothetical protein PRUPE_ppa013589mg [Prunus persica][more]
gi|694411304|ref|XP_009334023.1|2.5e-5385.96PREDICTED: ubiquitin domain-containing protein 1-like [Pyrus x bretschneideri][more]
gi|590610771|ref|XP_007021914.1|5.5e-5386.84Ubiquitin domain-containing protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Molecular Function
TermDefinition
GO:0043130ubiquitin binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0043130 ubiquitin binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G004650.1CmoCh16G004650.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13609UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATEDcoord: 1..115
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G004650Cucsa.273680Cucumber (Gy14) v1cgycmoB0750
CmoCh16G004650CmaCh04G006650Cucurbita maxima (Rimu)cmacmoB702
CmoCh16G004650Csa4G083480Cucumber (Chinese Long) v2cmocuB325
CmoCh16G004650MELO3C016122Melon (DHL92) v3.5.1cmomeB294
CmoCh16G004650ClCG07G010180Watermelon (Charleston Gray)cmowcgB293
CmoCh16G004650CSPI04G07920Wild cucumber (PI 183967)cmocpiB332
CmoCh16G004650Lsi04G020030Bottle gourd (USVL1VR-Ls)cmolsiB299
CmoCh16G004650Lsi07G002840Bottle gourd (USVL1VR-Ls)cmolsiB318
CmoCh16G004650Cp4.1LG01g00630Cucurbita pepo (Zucchini)cmocpeB314
CmoCh16G004650Cp4.1LG14g03530Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G004650MELO3C016122.2Melon (DHL92) v3.6.1cmomedB337
CmoCh16G004650CsaV3_4G008140Cucumber (Chinese Long) v3cmocucB0388
CmoCh16G004650Cla97C07G136860Watermelon (97103) v2cmowmbB335
CmoCh16G004650Bhi09G002880Wax gourdcmowgoB0448
CmoCh16G004650Bhi01G002489Wax gourdcmowgoB0433
CmoCh16G004650CsGy4G007790Cucumber (Gy14) v2cgybcmoB467
CmoCh16G004650Carg13089Silver-seed gourdcarcmoB0057
CmoCh16G004650Carg11362Silver-seed gourdcarcmoB0898
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G004650Silver-seed gourdcarcmoB0054
CmoCh16G004650Silver-seed gourdcarcmoB0055
CmoCh16G004650Cucumber (Chinese Long) v3cmocucB0393
CmoCh16G004650Cucurbita moschata (Rifu)cmocmoB286
CmoCh16G004650Cucurbita moschata (Rifu)cmocmoB287
CmoCh16G004650Cucurbita moschata (Rifu)cmocmoB288
CmoCh16G004650Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G004650Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G004650Cucurbita maxima (Rimu)cmacmoB703
CmoCh16G004650Watermelon (97103) v1cmowmB302
CmoCh16G004650Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G004650Cucurbita pepo (Zucchini)cmocpeB315
CmoCh16G004650Cucumber (Gy14) v2cgybcmoB470