Carg13089 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13089
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ubiquitin domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_101 : 235099 .. 238825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCTCTACAAAAAGCTTATTCTTCGGTTCTGCAAAATTCTTCCATTCCAACTCTCCACCGAGTTTCTGCTTTTCTCTGGCTTCGTTTTTGTATCTCTCTACTTGTGAATTGAGGCTTGCGTTCAAGCAAACGGCAATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGTGAGGTTCACTTCGCTTCTGTGATTCTTTCTTTGTTTATTGGAGATTTTTTGTTCTATGTTTGCCTGCTGTGTTGGCTATGAGGAATATAGATGATAATCAATGCAAGTTGATTTGTTGGGAGAGCGGGAGTGTTGGTCTTCTGGTATTGAATTTGTTCGGAATGGATTGGATTGGTCTTGATTTTCTTTGTTTGTTGCGTCTGTTTTCTTGATTTTCATTCTGTGGTTATCGCGTTGCTCGATTGTGTGCGTTTGTTTGTTTTGAGACTATGACAGTGGTTCGAAGCCTCGAGATTCTTTAACTTTACTTGCATTAGTTAGGATAATGAATTTTCAATTTAGATAATTGAGTTAAATTTTTGAAATAATTTCATCCTTCATTTATTTTGAGAATGATGGATTTTTTTTAAAAGGTTGATTAGAATTACTGCTGGCGTATTTATTGACATTTGCTGCTGGTGATTCAAATTCTACTAGTGATTCTTTCAGTTTCGGATCAATGAAGTCATCATGAATTGCATTCAAAATCTTGGCATATTTGTGGCTAAAGAATAGTTTCGCATTCAAAGAATTTGATTGGATTAAAAGTGGAGTTGTGGTATTAGAACATTACGACTAAAATTTCAGCAACTAACATATGAATGGACGGTATCTAATATTTCTACTTTATACTGCAATCAAAACGAAAAATTTGTAGAAGCTCTGTTACAACATGCTAGTTTGCGGGATGACAATTGTCTTTTGACTCTTTTCTAATCTGCAAAATGGCTAAGGTATCGCTGTACACGAATTCCTCCCTTCCCCGATCTCTATTCTCATAACAAATTCTGAAAAATAACAGGAATTGCTGAATTCTTGTATAGTAGGAAGAAAACACTTCTGAGGATACTGAAACGGAAAGAAAGCACTTAAAGAAAGTAGAGAAAATGAAAGAAAAAATAGGAAAATTTTAGGACGAAGCTTTCTAATTCTCCTTGTGTTGTTAAAGTACTGAAGGTTTAGGAATTTTATTTGAACTTTTCAAGGCTTCCCTTTGTTATCAGTGCTGCTACACTTGAACATGGTTTAGTTGGTTTGTACTTTATTCAAGCCATTTGACATATGACTGAAACTGCTTCTTTGTGTAGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACTGCACCTCACTATGGCGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGGTTAGCTGATCAAAAGAATTACTGAGAGTTTAGCTAATTAGGAATAAGCCTTACAGATTATATCATTCATGATTTCTGATTTCAGAATCTACTTTCTTTCTCGATAAAAATGTAAAACTACGGATAGATGACCATCACATTCATGGAAAAGGGTGAATACTGTAGTTGCAGGGGATCCAATGAAGGTTGGGACGAATTATCTCTTGGATATGACAATTATGTCATTCACAGCTGTATGCACAATTATTGGACCTTTTTCCAATTTCTAGGATCCTACCATTTGTCTTCCCTGTTTCCTAATAAACTAAGTTCTCGGTTTGGGAGATAAGGTTTCCTATTTTTGTGCCGATTACAGATTGCCGTTACCAACATCCAAGAATTTCATTTCACATGTAGGCTTTTCCAATTATTTCATTTCGGTTTGTGCCCATTTCGAAGGGGGATGCTTCTGGGAAGAAATGTGCTTCAGAGAGTTCGTTAAAGTTTTTGGTCCAATTGATTTAGTTTTTTTTTTTTATTACTTAGTTAACCATTAAGTATTTTATGAATATTGGCTTTTAGTTCTTGAATGGATACATCTTTAGAATCAGTTTCAATTGTAAGCCAAGATTTCTTTTGAGGACTCTCTGTGAGAGCTTAGGTTACACCAAAATGATTTTCTTTTTTCTTATGCTTAGAGTACTCATTATGTGATTTTACCTAGGATTATGGAACTTGATAACTATAGAAACTTGTGTCTGGACTTGATCTTTTGTTGGTTTATGTTTTGGGCCGGCTTCTTGTTATTTTGTTTTCTTTCTTCGTGTTTCTTTTCCCTTTTCTTGTGCCTTTTAGTGGCCTTTAGTATTTTCGTAAAAAAGTTTCCTGAAAGCCCATTGATAATCGCCACAAAATTTTGAAATGGCCTGCCTCATTCGAATTTCTCTTCGCTCATAATGTATCTTGCAATCCGTTATTGATTTGAGCTAAGAGACATTAGTTATTATTTCTCTCCAACCTTCACCTTTCACTTCCCCCGACTGATTTTTCCCCATTGCATACTAGATTGAAAGCAATGCTATTTGTAGTTCAAAGTCAAACTCTTTTGGCCCGAACTTTGTCCTGGACTACATTCTTGCTGTTTGATGCAAACTTTAACCTTTATGAAGGTTTCTGATACACATCACTATTTTCTGTTAATTTTCACTATCTTATTAAATGCCTTTTTCCAAGAGAAAACAACTTGATCTTAGTTGCCAATTGAAACGTTAGATCCCCGGGTATATGGTTGTTGGAAATAGCCAAATAAAGTGTCAGTTCCAAAGATCCTACAATCTTCTACTGGTCAATCCTCCAACGTATCTCCCCAGGATATAGAGTGAGGGTATCTCTTTGGAATCCCGAACAAATATGGAAATGATGTAGGATTTTGTACCAAAATCACAATTCACAAGAGAAAAAGATGATTGACTAATTCACAGGCCCTGCAATAAAGAGAACACTAATATAATGAGAGGGCACCATTATTTAGTTTTCTGAAAGTCAATGTATGAAAAGGATCAGAAGGCAGGCTTCTAATCGAGAAAATTAGGGAGGATCAAAGACAAATCATGAGAAACATGAATAATAAAGACGCCAAGTCTTTCTTCTTTGATTTTAAATTGGCGTCTATATGTAACTCACCTATTGGTGTTTGAATTTTTTACTCCGTTATTTCATTCATCAATTAAATTTGTCTCTTCTCTAGAAAAAGACTTAACCAAACAACCGTGATTTGAAAATTGTGTTAAAAGACATTGAAAGGTTTGGACTTCTAAGATGAGTTAGAAGTGAGCACAATTTCTAAAATAGCATTCTAGAACTTCCAATTCATCTAAAAGTATTTCAATGTCTCTTAGAAGAAAGGAAGATCAAGCCTCTCCAGTCTCTATCTTCTTTTATTTTATTTCCATCCTTGGGCTACTACACACCTTCAAGTCTTCAACATTGACCTCACCTTTCTTATACATTACTTTGTCCCTCACGGCCTGCTTACTAAAATTTACCAACAATTTTCTTTGATATCAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTCCATACCATTGCTTCATTTAA

mRNA sequence

GTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCTCTACAAAAAGCTTATTCTTCGGTTCTGCAAAATTCTTCCATTCCAACTCTCCACCGAGTTTCTGCTTTTCTCTGGCTTCGTTTTTGTATCTCTCTACTTGTGAATTGAGGCTTGCGTTCAAGCAAACGGCAATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACTGCACCTCACTATGGCGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTCCATACCATTGCTTCATTTAA

Coding sequence (CDS)

GTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTTCTCTACAAAAAGCTTATTCTTCGGTTCTGCAAAATTCTTCCATTCCAACTCTCCACCGAGTTTCTGCTTTTCTCTGGCTTCGTTTTTGTATCTCTCTACTTGTGAATTGAGGCTTGCGTTCAAGCAAACGGCAATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGGGATGAGTTTTGGGACACTGCACCTCACTATGGCGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTCCATACCATTGCTTCATTTAA

Protein sequence

VSSSSSSSSSSSSSSSSSSFSTKSLFFGSAKFFHSNSPPSFCFSLASFLYLSTCELRLAFKQTAMGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGPYHCFI

Homology

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BLAST of Carg13089 vs. NCBI nr
Match: XP_022983333.1 (ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita maxima] >XP_023527299.1 ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 2.5e-59
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
           FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG
Sbjct: 61  FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 113

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BLAST of Carg13089 vs. NCBI nr
Match: XP_022942916.1 (ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022983339.1 ubiquitin domain-containing protein 1-like isoform X2 [Cucurbita maxima] >XP_023527305.1 ubiquitin domain-containing protein 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 186.4 bits (472), Expect = 8.5e-44
Identity = 94/113 (83.19%), Postives = 94/113 (83.19%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN       
Sbjct: 1   MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRN------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                       EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG
Sbjct: 61  ------------EIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 94

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BLAST of Carg13089 vs. NCBI nr
Match: XP_022142761.1 (ubiquitin domain-containing protein 1-like [Momordica charantia] >XP_022142762.1 ubiquitin domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 3.0e-41
Identity = 89/113 (78.76%), Postives = 91/113 (80.53%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC GSS+TNGDGSTK+IRKPKPWKHPQPITRSQL QLRDEFWDTAPHYGGRN       
Sbjct: 1   MGCAGSSRTNGDGSTKRIRKPKPWKHPQPITRSQLMQLRDEFWDTAPHYGGRN------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                       EIWDALRAAAEAE SLAQAIIDSAGVIVQNADLTVCYDERG
Sbjct: 61  ------------EIWDALRAAAEAEXSLAQAIIDSAGVIVQNADLTVCYDERG 94

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BLAST of Carg13089 vs. NCBI nr
Match: XP_022931411.1 (ubiquitin domain-containing protein 2-like [Cucurbita moschata])

HSP 1 Score: 173.7 bits (439), Expect = 5.7e-40
Identity = 86/113 (76.11%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC GSSQTNGDGS KKIRKPK WKHPQPITRSQL QLR+EFWDTAPHYGGR        
Sbjct: 1   MGCAGSSQTNGDGSIKKIRKPKSWKHPQPITRSQLVQLREEFWDTAPHYGGR-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAEAELSLAQAIIDSAGVI+QNADLT+CYDERG
Sbjct: 61  -----------KEIWDALRAAAEAELSLAQAIIDSAGVIIQNADLTICYDERG 94

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BLAST of Carg13089 vs. NCBI nr
Match: XP_004137230.1 (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus] >KGN53573.1 hypothetical protein Csa_4G083480 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.3e-39
Identity = 86/113 (76.11%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC GSSQT  DGS KKIRKPK WKHPQPITRSQLTQLRDEFWDTAPHYGGR        
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGR-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAEAELSLAQAI+DSAGVIVQNADLT+CYDERG
Sbjct: 61  -----------KEIWDALRAAAEAELSLAQAIVDSAGVIVQNADLTICYDERG 94

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BLAST of Carg13089 vs. TAIR10
Match: AT1G53400.1 (Ubiquitin domain-containing protein)

HSP 1 Score: 158.3 bits (399), Expect = 4.5e-39
Identity = 76/113 (67.26%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC GS+Q+  DGS KKIRKPKPWKH QPIT+++L +LR+EFWDTAPHYGGR        
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGR-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAEA++SLAQAI+DSAGVIVQN DLTVCYDERG
Sbjct: 61  -----------KEIWDALRAAAEADISLAQAIVDSAGVIVQNTDLTVCYDERG 94

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BLAST of Carg13089 vs. TAIR10
Match: AT5G45740.1 (Ubiquitin domain-containing protein)

HSP 1 Score: 141.0 bits (354), Expect = 7.5e-34
Identity = 69/115 (60.00%), Postives = 82/115 (71.30%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGST--KKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVS 124
           MGC+GSSQ   +G    KKI KPKPW H +PITR+QLT +R+EFWDT+PHYGG+      
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQ------ 60

Query: 125 NIFVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                        REIW+ALRAAAEA+L LAQ I+DSAGVIVQN DLT+C+DERG
Sbjct: 61  -------------REIWEALRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERG 96

[Close]

BLAST of Carg13089 vs. TAIR10
Match: AT1G16960.1 (Ubiquitin domain-containing protein)

HSP 1 Score: 135.6 bits (340), Expect = 3.1e-32
Identity = 68/114 (59.65%), Postives = 83/114 (72.81%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC  SS+T  +G  +KIR+PK WKHPQPI+R +LTQ+R+EFWDTAPHYGG+        
Sbjct: 1   MGC-SSSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGK-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEA-ELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAE  +LSLAQ I++SAGVIVQN DLT+CYDE+G
Sbjct: 61  -----------KEIWDALRAAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKG 94

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BLAST of Carg13089 vs. Swiss-Prot
Match: sp|Q4V8W7|UBTD1_DANRE (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.7e-15
Identity = 54/137 (39.42%), Postives = 69/137 (50.36%), Query Frame = 0


Query: 66  GCVG--SSQTNGDGS---------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAPHY 125
           GCVG   ++T G GS          + ++K KP WK   P+T  QL   RDEFWDTAP +
Sbjct: 3   GCVGRERAETRGRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAF 62

Query: 126 GGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNADL 182
            GR                   +EIWDAL+AAA A    +  LAQAI+D A + + +  L
Sbjct: 63  EGR-------------------KEIWDALKAAAVALECSDHELAQAIVDGANITLPHGSL 120

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BLAST of Carg13089 vs. Swiss-Prot
Match: sp|Q640W6|UBTD1_XENLA (Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 55/139 (39.57%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 66  GCV-------GSSQTNGDGS------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAP 125
           GCV       GS   N DG+       + ++K KP WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGTHHDSSGSLNENSDGTGVALGRNQPLKKDKPKWKSDYPMTDGQLRSKRDEFWDTAP 62

Query: 126 HYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNA 182
            + GR                   +EIWDAL+AAA A    +  LAQAIID A + + + 
Sbjct: 63  AFEGR-------------------KEIWDALKAAAHAFESNDHELAQAIIDGASITLPHG 122

[Close]

BLAST of Carg13089 vs. Swiss-Prot
Match: sp|Q6DG43|UBTD2_DANRE (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 54/139 (38.85%), Postives = 69/139 (49.64%), Query Frame = 0


Query: 66  GCVGSS-------QTNGDGS------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAP 125
           GCVGS          N DG+       + +++ KP WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGSHHDSSGSLNENSDGTGVALGRNQPLKREKPKWKSDYPMTDGQLRSKRDEFWDTAP 62

Query: 126 HYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNA 182
            + GR                   +EIWDAL+AAA+A    +  LAQAIID A + + + 
Sbjct: 63  AFEGR-------------------KEIWDALKAAAQAFESNDHELAQAIIDGASITLPHG 122

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BLAST of Carg13089 vs. Swiss-Prot
Match: sp|Q6PGH0|UBTD2_MOUSE (Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-14
Identity = 55/139 (39.57%), Postives = 68/139 (48.92%), Query Frame = 0


Query: 66  GCV-------GSSQTNGDGS------TKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAP 125
           GCV       GS   N DG+       + ++K KP WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGAQHDSSGSLNENSDGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAP 62

Query: 126 HYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNA 182
            + GR                   +EIWDAL+AAA A    +  LAQAIID A + + + 
Sbjct: 63  AFEGR-------------------KEIWDALKAAAHAFESNDHELAQAIIDGANITLPHG 122

[Close]

BLAST of Carg13089 vs. Swiss-Prot
Match: sp|Q5EAE3|UBTD2_BOVIN (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-14
Identity = 52/139 (37.41%), Postives = 66/139 (47.48%), Query Frame = 0


Query: 66  GCVGSSQTNGD-------------GSTKKIRKPKP-WKHPQPITRSQLTQLRDEFWDTAP 125
           GCVG+   +               G  + ++K KP WK   P+T  QL   RDEFWDTAP
Sbjct: 3   GCVGAQHDSSGSLNENSEGTGVALGRNQPLKKEKPKWKSDYPMTDGQLRSKRDEFWDTAP 62

Query: 126 HYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEA----ELSLAQAIIDSAGVIVQNA 182
            + GR                   +EIWDAL+AAA A    +  LAQAIID A + + + 
Sbjct: 63  AFEGR-------------------KEIWDALKAAAHAFESNDHELAQAIIDGANITLPHG 122

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BLAST of Carg13089 vs. TrEMBL
Match: tr|A0A0A0KVJ9|A0A0A0KVJ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083480 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.4e-40
Identity = 86/113 (76.11%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC GSSQT  DGS KKIRKPK WKHPQPITRSQLTQLRDEFWDTAPHYGGR        
Sbjct: 1   MGCAGSSQTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGR-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAEAELSLAQAI+DSAGVIVQNADLT+CYDERG
Sbjct: 61  -----------KEIWDALRAAAEAELSLAQAIVDSAGVIVQNADLTICYDERG 94

[Close]

BLAST of Carg13089 vs. TrEMBL
Match: tr|A0A2P2JGW1|A0A2P2JGW1_RHIMU (Ubiquitin domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.9e-39
Identity = 84/113 (74.34%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGCVGSS   GDG+ KKIRKPKPWKHPQPITRSQL Q+RDEFWDTAPHYGGR        
Sbjct: 1   MGCVGSSHAKGDGTAKKIRKPKPWKHPQPITRSQLVQMRDEFWDTAPHYGGR-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAEA+LSLAQAI+DSAGVIVQNADLTVCYDERG
Sbjct: 61  -----------KEIWDALRAAAEADLSLAQAIVDSAGVIVQNADLTVCYDERG 94

[Close]

BLAST of Carg13089 vs. TrEMBL
Match: tr|B9SEV6|B9SEV6_RICCO (Ubiquitin domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCOM_0106280 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.2e-39
Identity = 83/113 (73.45%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGCVGSS   GDG+ KKIRKPKPWKHPQPIT+SQL Q+RDEFWDTAPHYGGR        
Sbjct: 1   MGCVGSSHAKGDGTMKKIRKPKPWKHPQPITKSQLVQMRDEFWDTAPHYGGR-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAEAELSLAQAI+DSAGVIVQNADLT+CYDERG
Sbjct: 61  -----------KEIWDALRAAAEAELSLAQAIVDSAGVIVQNADLTICYDERG 94

[Close]

BLAST of Carg13089 vs. TrEMBL
Match: tr|A0A1S4DZK7|A0A1S4DZK7_CUCME (ubiquitin domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC103492942 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.6e-38
Identity = 84/113 (74.34%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC GSS T  DGS KKIRKPK WKHPQPITRSQLTQLRDEFWDTAPHYGGR        
Sbjct: 1   MGCAGSSLTKADGSIKKIRKPKSWKHPQPITRSQLTQLRDEFWDTAPHYGGR-------- 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                      +EIWDALRAAAEAELSLAQ I+DSAGVIVQNADLT+CYDERG
Sbjct: 61  -----------KEIWDALRAAAEAELSLAQVIVDSAGVIVQNADLTICYDERG 94

[Close]

BLAST of Carg13089 vs. TrEMBL
Match: tr|A0A2K1YIG5|A0A2K1YIG5_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G107700v3 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38
Identity = 81/113 (71.68%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 65  MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNI 124
           MGC GSSQ   DG+ KKIRKPKPWKHPQPIT+SQL Q+RDEFWDTAPHYGGR G      
Sbjct: 1   MGCAGSSQAKSDGNVKKIRKPKPWKHPQPITKSQLMQMRDEFWDTAPHYGGRKG------ 60

Query: 125 FVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERG 178
                       +IWDALRAAA+AELSLAQAI+DSAGVIVQNADLT+CYDERG
Sbjct: 61  ------------KIWDALRAAADAELSLAQAIVDSAGVIVQNADLTICYDERG 95

The following BLAST results are available for this feature:

BLAST of Carg13089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983333.1	2.5e-59	100.00	ubiquitin domain-containing protein 1-like isoform X1 [Cucurbita maxima] >XP_023...	[more]
XP_022942916.1	8.5e-44	83.19	ubiquitin domain-containing protein 1-like [Cucurbita moschata] >XP_022983339.1 ...	[more]
XP_022142761.1	3.0e-41	78.76	ubiquitin domain-containing protein 1-like [Momordica charantia] >XP_022142762.1...	[more]
XP_022931411.1	5.7e-40	76.11	ubiquitin domain-containing protein 2-like [Cucurbita moschata]	[more]
XP_004137230.1	1.3e-39	76.11	PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis sativus] >KGN5357...	[more]

BLAST of Carg13089 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G53400.1	4.5e-39	67.26	Ubiquitin domain-containing protein	[more]
AT5G45740.1	7.5e-34	60.00	Ubiquitin domain-containing protein	[more]
AT1G16960.1	3.1e-32	59.65	Ubiquitin domain-containing protein	[more]

BLAST of Carg13089 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q4V8W7\|UBTD1_DANRE	9.7e-15	39.42	Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1	[more]
sp\|Q640W6\|UBTD1_XENLA	2.8e-14	39.57	Ubiquitin domain-containing protein 1 OS=Xenopus laevis OX=8355 GN=ubtd1 PE=2 SV...	[more]
sp\|Q6DG43\|UBTD2_DANRE	2.8e-14	38.85	Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1	[more]
sp\|Q6PGH0\|UBTD2_MOUSE	2.8e-14	39.57	Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=...	[more]
sp\|Q5EAE3\|UBTD2_BOVIN	8.2e-14	37.41	Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1	[more]

BLAST of Carg13089 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KVJ9\|A0A0A0KVJ9_CUCSA	8.4e-40	76.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G083480 PE=4 SV=1	[more]
tr\|A0A2P2JGW1\|A0A2P2JGW1_RHIMU	1.9e-39	74.34	Ubiquitin domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|B9SEV6\|B9SEV6_RICCO	3.2e-39	73.45	Ubiquitin domain-containing protein, putative OS=Ricinus communis OX=3988 GN=RCO...	[more]
tr\|A0A1S4DZK7\|A0A1S4DZK7_CUCME	1.6e-38	74.34	ubiquitin domain-containing protein 2-like OS=Cucumis melo OX=3656 GN=LOC1034929...	[more]
tr\|A0A2K1YIG5\|A0A2K1YIG5_POPTR	2.1e-38	71.68	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_011G107700v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038169	DC-UbP/UBTD2_N_sf
IPR032752	DC-UbP/UBTD2_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13089-RA	Carg13089-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032752	DC-UbP/UBTD2, N-terminal domain	PFAM	PF16455	UBD	coord: 79..117 e-value: 9.6E-7 score: 28.9 coord: 136..179 e-value: 7.4E-11 score: 42.1
IPR038169	DC-UbP/UBTD2, N-terminal domain superfamily	GENE3D	G3DSA:1.20.225.20		coord: 135..182 e-value: 2.9E-11 score: 45.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR13609:SF13	SUBFAMILY NOT NAMED	coord: 136..178
None	No IPR available	PANTHER	PTHR13609:SF13	SUBFAMILY NOT NAMED	coord: 65..116
None	No IPR available	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 136..178
None	No IPR available	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 65..116

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13089	Csa4G083480	Cucumber (Chinese Long) v2	carcuB0046
Carg13089	ClCG07G010180	Watermelon (Charleston Gray)	carwcgB0050
Carg13089	CSPI04G07920	Wild cucumber (PI 183967)	carcpiB0050
Carg13089	CmaCh04G006650	Cucurbita maxima (Rimu)	carcmaB0055
Carg13089	CmoCh16G004650	Cucurbita moschata (Rifu)	carcmoB0057
Carg13089	Lsi07G002840	Bottle gourd (USVL1VR-Ls)	carlsiB042
Carg13089	Cp4.1LG01g00630	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13089	Cp4.1LG14g03530	Cucurbita pepo (Zucchini)	carcpeB0060
Carg13089	CsGy4G007790	Cucumber (Gy14) v2	carcgybB0046
Carg13089	CsaV3_4G008140	Cucumber (Chinese Long) v3	carcucB0051
Carg13089	Cla97C07G136860	Watermelon (97103) v2	carwmbB0047
Carg13089	Bhi01G002489	Wax gourd	carwgoB0052

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13089	Carg11362	Silver-seed gourd	carcarB053

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13089	Silver-seed gourd	carcarB052
Carg13089	Cucurbita moschata (Rifu)	carcmoB0058
Carg13089	Cucurbita pepo (Zucchini)	carcpeB0058
Carg13089	Bottle gourd (USVL1VR-Ls)	carlsiB043
Carg13089	Watermelon (97103) v1	carwmB0043