CmoCh16G003090 (gene) Cucurbita moschata (Rifu)

NameCmoCh16G003090
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaC03g49690D protein
LocationCmo_Chr16 : 1415758 .. 1416246 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTCGCAATCAATCTTCGTTTTCCTAGCGTCCATGGCCAGATCCACAATTTCCAATTTCAATCTTGGCCGTCGCCGGCCCTTTCTAGGAGTCGGCTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTGGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGAGCTCTGCGGATTTCTAGGGCTTAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTGATTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGCGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCGCCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

mRNA sequence

ATGATGTTCGCAATCAATCTTCGTTTTCCTAGCGTCCATGGCCAGATCCACAATTTCCAATTTCAATCTTGGCCGTCGCCGGCCCTTTCTAGGAGTCGGCTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTGGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGAGCTCTGCGGATTTCTAGGGCTTAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTGATTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGCGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCGCCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

Coding sequence (CDS)

ATGATGTTCGCAATCAATCTTCGTTTTCCTAGCGTCCATGGCCAGATCCACAATTTCCAATTTCAATCTTGGCCGTCGCCGGCCCTTTCTAGGAGTCGGCTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTGGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGAGCTCTGCGGATTTCTAGGGCTTAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTGATTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGCGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCGCCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA
BLAST of CmoCh16G003090 vs. TrEMBL
Match: A0A0A0KYF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179140 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.6e-58
Identity = 125/162 (77.16%), Postives = 134/162 (82.72%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M+ AINLR P     IH+F+FQ  PSP LSR+R+P QITYCRKK SDADLASDLA EVAK
Sbjct: 1   MISAINLRLP-----IHSFRFQPSPSPTLSRNRMPRQITYCRKKLSDADLASDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQ EEAM KSRE LFTELC FLGLKSEETKR W KM+EEAKL L+KEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSREFLFTELCEFLGLKSEETKRKWMKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R  KEMVEEYV NGEN   ISSASS ISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSFISSLKKTMGL 156

BLAST of CmoCh16G003090 vs. TrEMBL
Match: M5VTM1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018393mg PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-30
Identity = 83/163 (50.92%), Postives = 105/163 (64.42%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQIT-YCRKK-FSDADLASDLAMEV 60
           M   +NL  P +  Q   F   S+PS     +R   QI  +C  K  SDA+LASDL+   
Sbjct: 1   MALRMNLLSPKIPKQPPKFHTNSYPSITRFNTRPKTQIIIHCNNKNISDAELASDLS--- 60

Query: 61  AKINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWG 120
            K+NT  +Q EEAM KSRE+LFTELC +L  KSEE K+ W+KM+EE K  LIK FVSEWG
Sbjct: 61  -KMNTLFMQREEAMKKSRELLFTELCQYLNSKSEEVKKKWRKMEEEDKWVLIKGFVSEWG 120

Query: 121 FNFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
            NF PLS +S KE+VEE+ ++ EN PA SSAS+    LK+ +G
Sbjct: 121 VNFHPLSAKSVKELVEEH-LHEENPPAKSSASAFFPGLKRMMG 158

BLAST of CmoCh16G003090 vs. TrEMBL
Match: B9HN68_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08390g PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.4e-29
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M    +L FP+   +   F    +P+    R+R+PC     +   +DADLAS LA EVAK
Sbjct: 1   MALRTHLFFPNTLIRPPKFHSCPFPTTTHFRTRIPCTN---KNSLTDADLASGLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INT+L+Q EEAM KSRE+LFTELC +L L  EE ++ W KMD+E    L+K FV+EWG N
Sbjct: 61  INTHLVQREEAMKKSRELLFTELCNYLALDKEEVEKKWSKMDQEEIRVLVKGFVNEWGAN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
           F PLS RS +EM+EEY ++ E   + SS S L   LK+ +G
Sbjct: 121 FHPLSARSVEEMIEEY-LHEEKPSSNSSRSMLFPGLKRIMG 157

BLAST of CmoCh16G003090 vs. TrEMBL
Match: A0A067KIJ2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09909 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 75/166 (45.18%), Postives = 103/166 (62.05%), Query Frame = 1

Query: 1   MMFAINLRFPS-----VHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLA 60
           M   I   FP+     +  Q H F F   P+      R+  QI   +++ SDADLASDLA
Sbjct: 1   MALRIQFLFPNTLSEPLKSQTHPFSF---PTATHFTKRIKTQIPCAKRRISDADLASDLA 60

Query: 61  MEVAKINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVS 120
            EVA+IN +L Q EEAM KS+E+LF ELC +L ++ EE KR W K+D++ K  L++ FV+
Sbjct: 61  TEVARINADLAQREEAMKKSKELLFIELCHYLAIEKEEVKRKWSKIDQQEKWVLLEGFVN 120

Query: 121 EWGFNFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
           EWG NF PLS RS +EM++EY+   E   A S++S L   LK+ +G
Sbjct: 121 EWGVNFHPLSIRSIREMIDEYL--NEEKTAASNSSDLFPGLKRMMG 161

BLAST of CmoCh16G003090 vs. TrEMBL
Match: B9GJ06_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s29290g PE=4 SV=2)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 80/161 (49.69%), Postives = 96/161 (59.63%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M    NL FP+   Q     F   P+    R+R+ C    CR        ASDLA EVAK
Sbjct: 1   MALRTNLFFPNTILQRPKSYFCPSPTTTHFRTRILCTHKKCRS-------ASDLASEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           IN +L+Q EEAM KSRE+LF ELC +L L  +E KR W KMD+E K  LIK FV EWG N
Sbjct: 61  INIHLVQREEAMKKSRELLFAELCKYLALDKDEVKRKWSKMDQEEKRVLIKGFVEEWGVN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
           F PLS RS KEM+EEY+  G+  P+ SS S L   LK+ +G
Sbjct: 121 FHPLSARSVKEMIEEYLHEGK-PPSHSSGSMLFPGLKRIMG 153

BLAST of CmoCh16G003090 vs. TAIR10
Match: AT5G64480.1 (AT5G64480.1 unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 1

Query: 42  RKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKM 101
           +K  +D++LA+DLA E+ K NT   Q  EAM KS EIL+ E C  + LK +E K  W K+
Sbjct: 57  KKIMTDSELATDLAREIGKANTVAEQRREAMKKSGEILWAEFCRHMDLKEDEMKIKWNKI 116

Query: 102 DEEAKLTLIKEFVSEWGFNFQPLSPRSAKEMVE------EYVINGENSPAISSASSLISS 161
            EE KL L++EFV EW  +FQPLS  S KEMV+      +  I   +S ++SS S L   
Sbjct: 117 GEEEKLVLVREFVDEWAGDFQPLSITSVKEMVDQECLDSDKTIESSSSSSMSSFSGLFPG 176

BLAST of CmoCh16G003090 vs. NCBI nr
Match: gi|449459562|ref|XP_004147515.1| (PREDICTED: uncharacterized protein LOC101216824 [Cucumis sativus])

HSP 1 Score: 231.1 bits (588), Expect = 1.4e-57
Identity = 125/162 (77.16%), Postives = 134/162 (82.72%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M+ AINLR P     IH+F+FQ  PSP LSR+R+P QITYCRKK SDADLASDLA EVAK
Sbjct: 1   MISAINLRLP-----IHSFRFQPSPSPTLSRNRMPRQITYCRKKLSDADLASDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQ EEAM KSRE LFTELC FLGLKSEETKR W KM+EEAKL L+KEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSREFLFTELCEFLGLKSEETKRKWMKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R  KEMVEEYV NGEN   ISSASS ISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSFISSLKKTMGL 156

BLAST of CmoCh16G003090 vs. NCBI nr
Match: gi|659108891|ref|XP_008454441.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-53
Identity = 121/162 (74.69%), Postives = 132/162 (81.48%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M+ AINLR P   G+IHNF+FQ  PSP L R+R+P QITYCRKK SDADLA DLA EVAK
Sbjct: 1   MISAINLRPP--RGEIHNFRFQPSPSPTLFRNRMPRQITYCRKKLSDADLAFDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQ EEAM KSR  L+  +  FLGLKSEETKR WKKM+EEAKL L+KEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSRAFLYRAV-EFLGLKSEETKRKWKKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R  KEMVEEYV NGEN   ISSASSLISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSLISSLKKTMGL 158

BLAST of CmoCh16G003090 vs. NCBI nr
Match: gi|743796370|ref|XP_011005066.1| (PREDICTED: uncharacterized protein LOC105111417 [Populus euphratica])

HSP 1 Score: 144.1 bits (362), Expect = 2.2e-31
Identity = 80/161 (49.69%), Postives = 104/161 (64.60%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M    +L FP+   +   F    +P+    R+R+PC     +   +DADLAS LA EVAK
Sbjct: 1   MALRTHLFFPNTLIRPPKFHSCPFPTTTHFRTRIPCTN---KNSLTDADLASGLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INT+L+Q EEAM KSRE+LFTELC +L L  EE KR W KMD+E +  L+K FV+EWG N
Sbjct: 61  INTHLVQREEAMKKSRELLFTELCNYLALDKEEVKRKWSKMDKEERRVLVKGFVNEWGAN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
           F PLS RS KEM+EEY ++ E   + SS S+L   LK+ +G
Sbjct: 121 FHPLSARSVKEMIEEY-LHEEKPSSNSSRSTLFPGLKRIMG 157

BLAST of CmoCh16G003090 vs. NCBI nr
Match: gi|225429242|ref|XP_002264192.1| (PREDICTED: uncharacterized protein LOC100267945 [Vitis vinifera])

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 76/149 (51.01%), Postives = 95/149 (63.76%), Query Frame = 1

Query: 10  PSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAKINTNLIQGE 69
           P +H     F   + P P       P  + +C    SDA+LASDLA EV K+NT+L+  +
Sbjct: 14  PKLHPPSAFFLPTNLPKPG------PRSLIHCTNSISDAELASDLATEVKKMNTHLVLRK 73

Query: 70  EAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFNFQPLSPRSA 129
           EAM KSREILFTE+C +LG+ SEE KR W+KM EE K  L+K F+SEWG NF PLS +S 
Sbjct: 74  EAMEKSREILFTEMCQYLGMGSEEVKRRWRKMGEEEKRVLLKGFISEWGVNFHPLSAKSV 133

Query: 130 KEMVEEYVINGENSPAISSASSLISSLKK 159
           KEMVEEY+   + SP  SS S L   LK+
Sbjct: 134 KEMVEEYLHEDDPSPHSSSLSLLFPGLKR 156

BLAST of CmoCh16G003090 vs. NCBI nr
Match: gi|1000968001|ref|XP_002518309.2| (PREDICTED: uncharacterized protein LOC8279178 [Ricinus communis])

HSP 1 Score: 139.8 bits (351), Expect = 4.2e-30
Identity = 81/163 (49.69%), Postives = 101/163 (61.96%), Query Frame = 1

Query: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRK--KFSDADLASDLAMEV 60
           M   I L  P+   Q   F++  +P+     +RL   I  C    K SDADLASDLA EV
Sbjct: 1   MALKIQLLSPNTIPQARMFRYFPFPTATHFSNRLKTHIQ-CNNNNKVSDADLASDLATEV 60

Query: 61  AKINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWG 120
           AKINT L+Q EEAM K +E+LFTELC +L ++ EE KR W  +D+E K  LI  FV EWG
Sbjct: 61  AKINTQLVQKEEAMRKGKELLFTELCHYLDMEKEEVKRKWSNLDQEEKWVLIIGFVDEWG 120

Query: 121 FNFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
            NF PLS RS + M+EEY IN + S + SSAS L   LK+ +G
Sbjct: 121 INFHPLSARSVRAMIEEY-INEKKSSSSSSASELFPGLKRLMG 161

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYF6_CUCSA9.6e-5877.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179140 PE=4 SV=1[more]
M5VTM1_PRUPE2.9e-3050.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018393mg PE=4 SV=1[more]
B9HN68_POPTR1.4e-2947.83Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08390g PE=4 SV=1[more]
A0A067KIJ2_JATCU2.5e-2945.18Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09909 PE=4 SV=1[more]
B9GJ06_POPTR3.2e-2949.69Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s29290g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT5G64480.12.0e-2246.03 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449459562|ref|XP_004147515.1|1.4e-5777.16PREDICTED: uncharacterized protein LOC101216824 [Cucumis sativus][more]
gi|659108891|ref|XP_008454441.1|1.6e-5374.69PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 [Cucumis me... [more]
gi|743796370|ref|XP_011005066.1|2.2e-3149.69PREDICTED: uncharacterized protein LOC105111417 [Populus euphratica][more]
gi|225429242|ref|XP_002264192.1|1.1e-3051.01PREDICTED: uncharacterized protein LOC100267945 [Vitis vinifera][more]
gi|1000968001|ref|XP_002518309.2|4.2e-3049.69PREDICTED: uncharacterized protein LOC8279178 [Ricinus communis][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G003090.1CmoCh16G003090.1mRNA


The following gene(s) are paralogous to this gene:

None