CmaCh16G002890 (gene) Cucurbita maxima (Rimu)

NameCmaCh16G002890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_1
LocationCma_Chr16 : 1356846 .. 1357334 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATTCGCAATCAATCTTCGTTTTCCTCGCGTCCATGGCCAGATCCACAATTTCCAATTTCAATCTTGGCCGTCGTCGGCCCTTTCTAGGAGTCGACTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTAGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGATCTCTGCGGATTTCTAGAGCTAAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTAGTTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGTGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCACCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

mRNA sequence

ATGATATTCGCAATCAATCTTCGTTTTCCTCGCGTCCATGGCCAGATCCACAATTTCCAATTTCAATCTTGGCCGTCGTCGGCCCTTTCTAGGAGTCGACTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTAGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGATCTCTGCGGATTTCTAGAGCTAAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTAGTTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGTGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCACCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

Coding sequence (CDS)

ATGATATTCGCAATCAATCTTCGTTTTCCTCGCGTCCATGGCCAGATCCACAATTTCCAATTTCAATCTTGGCCGTCGTCGGCCCTTTCTAGGAGTCGACTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTAGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGATCTCTGCGGATTTCTAGAGCTAAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTAGTTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGTGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCACCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

Protein sequence

MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFNFQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIGL
BLAST of CmaCh16G002890 vs. TrEMBL
Match: A0A0A0KYF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179140 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56
Identity = 125/162 (77.16%), Postives = 133/162 (82.10%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           MI AINLR P     IH+F+FQ  PS  LSR+R+P QITYCRKK SDADLASDLA EVAK
Sbjct: 1   MISAINLRLP-----IHSFRFQPSPSPTLSRNRMPRQITYCRKKLSDADLASDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFN 120
           INTNLIQ EEAM KSRE LFT+LC FL LKSEETKR W KM+EEAKL LVKEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSREFLFTELCEFLGLKSEETKRKWMKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R VKEMVEEYV NGEN   ISSASS ISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSFISSLKKTMGL 156

BLAST of CmaCh16G002890 vs. TrEMBL
Match: M5VTM1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018393mg PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.2e-30
Identity = 82/163 (50.31%), Postives = 107/163 (65.64%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQIT-YCRKK-FSDADLASDLAMEV 60
           M   +NL  P++  Q   F   S+PS     +R   QI  +C  K  SDA+LASDL+   
Sbjct: 1   MALRMNLLSPKIPKQPPKFHTNSYPSITRFNTRPKTQIIIHCNNKNISDAELASDLS--- 60

Query: 61  AKINTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWG 120
            K+NT  +Q EEAM KSRE+LFT+LC +L  KSEE K+ W+KM+EE K  L+K FVSEWG
Sbjct: 61  -KMNTLFMQREEAMKKSRELLFTELCQYLNSKSEEVKKKWRKMEEEDKWVLIKGFVSEWG 120

Query: 121 FNFQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
            NF PLS +SVKE+VEE+ ++ EN PA SSAS+    LK+ +G
Sbjct: 121 VNFHPLSAKSVKELVEEH-LHEENPPAKSSASAFFPGLKRMMG 158

BLAST of CmaCh16G002890 vs. TrEMBL
Match: B9HN68_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08390g PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.1e-29
Identity = 78/161 (48.45%), Postives = 103/161 (63.98%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M    +L FP    +   F    +P++   R+R+PC     +   +DADLAS LA EVAK
Sbjct: 1   MALRTHLFFPNTLIRPPKFHSCPFPTTTHFRTRIPCTN---KNSLTDADLASGLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFN 120
           INT+L+Q EEAM KSRE+LFT+LC +L L  EE ++ W KMD+E    LVK FV+EWG N
Sbjct: 61  INTHLVQREEAMKKSRELLFTELCNYLALDKEEVEKKWSKMDQEEIRVLVKGFVNEWGAN 120

Query: 121 FQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
           F PLS RSV+EM+EEY ++ E   + SS S L   LK+ +G
Sbjct: 121 FHPLSARSVEEMIEEY-LHEEKPSSNSSRSMLFPGLKRIMG 157

BLAST of CmaCh16G002890 vs. TrEMBL
Match: A0A067KIJ2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09909 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 3.2e-29
Identity = 74/166 (44.58%), Postives = 104/166 (62.65%), Query Frame = 1

Query: 1   MIFAINLRFPR-----VHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLA 60
           M   I   FP      +  Q H F F   P++     R+  QI   +++ SDADLASDLA
Sbjct: 1   MALRIQFLFPNTLSEPLKSQTHPFSF---PTATHFTKRIKTQIPCAKRRISDADLASDLA 60

Query: 61  MEVAKINTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVS 120
            EVA+IN +L Q EEAM KS+E+LF +LC +L ++ EE KR W K+D++ K  L++ FV+
Sbjct: 61  TEVARINADLAQREEAMKKSKELLFIELCHYLAIEKEEVKRKWSKIDQQEKWVLLEGFVN 120

Query: 121 EWGFNFQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
           EWG NF PLS RS++EM++EY+   E   A S++S L   LK+ +G
Sbjct: 121 EWGVNFHPLSIRSIREMIDEYL--NEEKTAASNSSDLFPGLKRMMG 161

BLAST of CmaCh16G002890 vs. TrEMBL
Match: B9RX40_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0817010 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.2e-29
Identity = 75/145 (51.72%), Postives = 98/145 (67.59%), Query Frame = 1

Query: 19  FQFQSWPSSALSRSRLPCQITYCRK--KFSDADLASDLAMEVAKINTNLIQGEEAMTKSR 78
           F++  +P++    +RL   I  C    K SDADLASDLA EVAKINT L+Q EEAM K +
Sbjct: 2   FRYFPFPTATHFSNRLKTHIQ-CNNNNKVSDADLASDLATEVAKINTQLVQKEEAMRKGK 61

Query: 79  EILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFNFQPLSPRSVKEMVEEY 138
           E+LFT+LC +L+++ EE KR W  +D+E K  L+  FV EWG NF PLS RSV+ M+EEY
Sbjct: 62  ELLFTELCHYLDMEKEEVKRKWSNLDQEEKWVLIIGFVDEWGINFHPLSARSVRAMIEEY 121

Query: 139 VINGENSPAISSASSLISSLKKSIG 162
            IN + S + SSAS L   LK+ +G
Sbjct: 122 -INEKKSSSSSSASELFPGLKRLMG 144

BLAST of CmaCh16G002890 vs. TAIR10
Match: AT5G64480.1 (AT5G64480.1 unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-22
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 1

Query: 42  RKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKM 101
           +K  +D++LA+DLA E+ K NT   Q  EAM KS EIL+ + C  ++LK +E K  W K+
Sbjct: 57  KKIMTDSELATDLAREIGKANTVAEQRREAMKKSGEILWAEFCRHMDLKEDEMKIKWNKI 116

Query: 102 DEEAKLTLVKEFVSEWGFNFQPLSPRSVKEMVE------EYVINGENSPAISSASSLISS 161
            EE KL LV+EFV EW  +FQPLS  SVKEMV+      +  I   +S ++SS S L   
Sbjct: 117 GEEEKLVLVREFVDEWAGDFQPLSITSVKEMVDQECLDSDKTIESSSSSSMSSFSGLFPG 176

BLAST of CmaCh16G002890 vs. NCBI nr
Match: gi|449459562|ref|XP_004147515.1| (PREDICTED: uncharacterized protein LOC101216824 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 3.4e-56
Identity = 125/162 (77.16%), Postives = 133/162 (82.10%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           MI AINLR P     IH+F+FQ  PS  LSR+R+P QITYCRKK SDADLASDLA EVAK
Sbjct: 1   MISAINLRLP-----IHSFRFQPSPSPTLSRNRMPRQITYCRKKLSDADLASDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFN 120
           INTNLIQ EEAM KSRE LFT+LC FL LKSEETKR W KM+EEAKL LVKEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSREFLFTELCEFLGLKSEETKRKWMKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R VKEMVEEYV NGEN   ISSASS ISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSFISSLKKTMGL 156

BLAST of CmaCh16G002890 vs. NCBI nr
Match: gi|659108891|ref|XP_008454441.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 [Cucumis melo])

HSP 1 Score: 215.7 bits (548), Expect = 6.0e-53
Identity = 123/162 (75.93%), Postives = 132/162 (81.48%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           MI AINLR PR  G+IHNF+FQ  PS  L R+R+P QITYCRKK SDADLA DLA EVAK
Sbjct: 1   MISAINLRPPR--GEIHNFRFQPSPSPTLFRNRMPRQITYCRKKLSDADLAFDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFN 120
           INTNLIQ EEAM KSR  L+  +  FL LKSEETKR WKKM+EEAKL LVKEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSRAFLYRAV-EFLGLKSEETKRKWKKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R VKEMVEEYV NGEN   ISSASSLISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSLISSLKKTMGL 158

BLAST of CmaCh16G002890 vs. NCBI nr
Match: gi|743796370|ref|XP_011005066.1| (PREDICTED: uncharacterized protein LOC105111417 [Populus euphratica])

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 81/161 (50.31%), Postives = 105/161 (65.22%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M    +L FP    +   F    +P++   R+R+PC     +   +DADLAS LA EVAK
Sbjct: 1   MALRTHLFFPNTLIRPPKFHSCPFPTTTHFRTRIPCTN---KNSLTDADLASGLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFN 120
           INT+L+Q EEAM KSRE+LFT+LC +L L  EE KR W KMD+E +  LVK FV+EWG N
Sbjct: 61  INTHLVQREEAMKKSRELLFTELCNYLALDKEEVKRKWSKMDKEERRVLVKGFVNEWGAN 120

Query: 121 FQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
           F PLS RSVKEM+EEY ++ E   + SS S+L   LK+ +G
Sbjct: 121 FHPLSARSVKEMIEEY-LHEEKPSSNSSRSTLFPGLKRIMG 157

BLAST of CmaCh16G002890 vs. NCBI nr
Match: gi|1000968001|ref|XP_002518309.2| (PREDICTED: uncharacterized protein LOC8279178 [Ricinus communis])

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 80/163 (49.08%), Postives = 103/163 (63.19%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRK--KFSDADLASDLAMEV 60
           M   I L  P    Q   F++  +P++    +RL   I  C    K SDADLASDLA EV
Sbjct: 1   MALKIQLLSPNTIPQARMFRYFPFPTATHFSNRLKTHIQ-CNNNNKVSDADLASDLATEV 60

Query: 61  AKINTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWG 120
           AKINT L+Q EEAM K +E+LFT+LC +L+++ EE KR W  +D+E K  L+  FV EWG
Sbjct: 61  AKINTQLVQKEEAMRKGKELLFTELCHYLDMEKEEVKRKWSNLDQEEKWVLIIGFVDEWG 120

Query: 121 FNFQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
            NF PLS RSV+ M+EEY IN + S + SSAS L   LK+ +G
Sbjct: 121 INFHPLSARSVRAMIEEY-INEKKSSSSSSASELFPGLKRLMG 161

BLAST of CmaCh16G002890 vs. NCBI nr
Match: gi|595790611|ref|XP_007199054.1| (hypothetical protein PRUPE_ppa018393mg [Prunus persica])

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-30
Identity = 82/163 (50.31%), Postives = 107/163 (65.64%), Query Frame = 1

Query: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQIT-YCRKK-FSDADLASDLAMEV 60
           M   +NL  P++  Q   F   S+PS     +R   QI  +C  K  SDA+LASDL+   
Sbjct: 1   MALRMNLLSPKIPKQPPKFHTNSYPSITRFNTRPKTQIIIHCNNKNISDAELASDLS--- 60

Query: 61  AKINTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWG 120
            K+NT  +Q EEAM KSRE+LFT+LC +L  KSEE K+ W+KM+EE K  L+K FVSEWG
Sbjct: 61  -KMNTLFMQREEAMKKSRELLFTELCQYLNSKSEEVKKKWRKMEEEDKWVLIKGFVSEWG 120

Query: 121 FNFQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIG 162
            NF PLS +SVKE+VEE+ ++ EN PA SSAS+    LK+ +G
Sbjct: 121 VNFHPLSAKSVKELVEEH-LHEENPPAKSSASAFFPGLKRMMG 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KYF6_CUCSA2.4e-5677.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G179140 PE=4 SV=1[more]
M5VTM1_PRUPE2.2e-3050.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018393mg PE=4 SV=1[more]
B9HN68_POPTR1.1e-2948.45Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08390g PE=4 SV=1[more]
A0A067KIJ2_JATCU3.2e-2944.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09909 PE=4 SV=1[more]
B9RX40_RICCO4.2e-2951.72Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0817010 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G64480.11.2e-2246.83 unknown protein[more]
Match NameE-valueIdentityDescription
gi|449459562|ref|XP_004147515.1|3.4e-5677.16PREDICTED: uncharacterized protein LOC101216824 [Cucumis sativus][more]
gi|659108891|ref|XP_008454441.1|6.0e-5375.93PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 [Cucumis me... [more]
gi|743796370|ref|XP_011005066.1|1.7e-3150.31PREDICTED: uncharacterized protein LOC105111417 [Populus euphratica][more]
gi|1000968001|ref|XP_002518309.2|2.4e-3049.08PREDICTED: uncharacterized protein LOC8279178 [Ricinus communis][more]
gi|595790611|ref|XP_007199054.1|3.2e-3050.31hypothetical protein PRUPE_ppa018393mg [Prunus persica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G002890.1CmaCh16G002890.1mRNA


The following gene(s) are paralogous to this gene:

None