Carg19714 (gene) Silver-seed gourd

NameCarg19714
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionMediator of RNA polymerase II transcription subunit like
LocationCucurbita_argyrosperma_scaffold_133 : 296663 .. 297151 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTCGCAATCAATCTTCGTTTTCCTCGCGTCCATGGCCAGATCCATAATTTCCAATTTCAATCTTGGCCGTCGCCGGCCCTTTCTAGGAGTCGGCTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTGGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGAGCTCTGCGGATTTCTAGGGCTTAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTGATTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGCGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCGCCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

mRNA sequence

ATGATGTTCGCAATCAATCTTCGTTTTCCTCGCGTCCATGGCCAGATCCATAATTTCCAATTTCAATCTTGGCCGTCGCCGGCCCTTTCTAGGAGTCGGCTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTGGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGAGCTCTGCGGATTTCTAGGGCTTAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTGATTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGCGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCGCCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

Coding sequence (CDS)

ATGATGTTCGCAATCAATCTTCGTTTTCCTCGCGTCCATGGCCAGATCCATAATTTCCAATTTCAATCTTGGCCGTCGCCGGCCCTTTCTAGGAGTCGGCTGCCATGCCAGATCACCTACTGCAGAAAGAAATTCAGCGACGCGGATCTCGCCTCCGATCTCGCTATGGAAGTGGCGAAAATCAACACCAATTTGATTCAGGGAGAGGAGGCGATGACGAAGAGCAGAGAAATTTTGTTCACAGAGCTCTGCGGATTTCTAGGGCTTAAATCGGAGGAGACGAAGAGATGCTGGAAGAAGATGGACGAGGAGGCGAAATTGACATTGATTAAAGAGTTTGTGTCCGAGTGGGGGTTCAATTTCCAACCATTGTCGCCTAGGTCTGCGAAGGAAATGGTGGAAGAATACGTTATTAATGGAGAAAATTCGCCTGCAATTTCTTCTGCTTCGTCGTTGATTTCTTCGTTGAAGAAATCGATTGGATTGTGA

Protein sequence

MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFNFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL
BLAST of Carg19714 vs. NCBI nr
Match: XP_022922671.1 (uncharacterized protein LOC111430603 [Cucurbita moschata])

HSP 1 Score: 322.8 bits (826), Expect = 6.7e-85
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0

Query: 1   MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           MMFAINLRFP VHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK
Sbjct: 1   MMFAINLRFPSVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN
Sbjct: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL
Sbjct: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 162

BLAST of Carg19714 vs. NCBI nr
Match: XP_023551996.1 (uncharacterized protein LOC111809798 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.4 bits (825), Expect = 8.8e-85
Identity = 159/162 (98.15%), Postives = 162/162 (100.00%), Query Frame = 0

Query: 1   MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK
Sbjct: 1   MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTL+KEFVSEWGFN
Sbjct: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKK++GL
Sbjct: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKTMGL 162

BLAST of Carg19714 vs. NCBI nr
Match: XP_022984827.1 (uncharacterized protein LOC111482994 [Cucurbita maxima])

HSP 1 Score: 314.3 bits (804), Expect = 2.4e-82
Identity = 156/162 (96.30%), Postives = 159/162 (98.15%), Query Frame = 0

Query: 1   MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M+FAINLRFPRVHGQIHNFQFQSWPS ALSRSRLPCQITYCRKKFSDADLASDLAMEVAK
Sbjct: 1   MIFAINLRFPRVHGQIHNFQFQSWPSSALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQGEEAMTKSREILFT+LCGFL LKSEETKRCWKKMDEEAKLTL+KEFVSEWGFN
Sbjct: 61  INTNLIQGEEAMTKSREILFTDLCGFLELKSEETKRCWKKMDEEAKLTLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLSPRS KEMVEEYVINGENSPAISSASSLISSLKKSIGL
Sbjct: 121 FQPLSPRSVKEMVEEYVINGENSPAISSASSLISSLKKSIGL 162

BLAST of Carg19714 vs. NCBI nr
Match: XP_022149245.1 (uncharacterized protein LOC111017712 [Momordica charantia])

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 125/163 (76.69%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MMFAINL-RFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVA 60
           M+FAINL R P    +IH+F+FQS PSPALSR+RLPCQI+YC KK SDA+LASDLA EVA
Sbjct: 1   MIFAINLFRLPHGRSEIHSFRFQSPPSPALSRNRLPCQISYCIKKLSDAELASDLATEVA 60

Query: 61  KINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGF 120
           K++TNLIQ EEAM KS+E LFTELCGFLGLKSEETK+ WKKMDEEAKL L+KEFV+EWGF
Sbjct: 61  KMSTNLIQREEAMKKSKEFLFTELCGFLGLKSEETKKSWKKMDEEAKLALVKEFVTEWGF 120

Query: 121 NFQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           NFQPLSPRS KE+VEEYV NGEN  AISSA SLI SLK+ +GL
Sbjct: 121 NFQPLSPRSVKELVEEYV-NGENISAISSAPSLIPSLKRIMGL 162

BLAST of Carg19714 vs. NCBI nr
Match: XP_004147515.1 (PREDICTED: uncharacterized protein LOC101216824 [Cucumis sativus] >KGN53879.1 hypothetical protein Csa_4G179140 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 2.0e-57
Identity = 125/162 (77.16%), Postives = 134/162 (82.72%), Query Frame = 0

Query: 1   MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M+ AINLR P     IH+F+FQ  PSP LSR+R+P QITYCRKK SDADLASDLA EVAK
Sbjct: 1   MISAINLRLP-----IHSFRFQPSPSPTLSRNRMPRQITYCRKKLSDADLASDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQ EEAM KSRE LFTELC FLGLKSEETKR W KM+EEAKL L+KEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSREFLFTELCEFLGLKSEETKRKWMKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R  KEMVEEYV NGEN   ISSASS ISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSFISSLKKTMGL 156

BLAST of Carg19714 vs. TAIR10
Match: AT5G64480.1 (unknown protein)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-22
Identity = 58/126 (46.03%), Postives = 77/126 (61.11%), Query Frame = 0

Query: 42  RKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKM 101
           +K  +D++LA+DLA E+ K NT   Q  EAM KS EIL+ E C  + LK +E K  W K+
Sbjct: 57  KKIMTDSELATDLAREIGKANTVAEQRREAMKKSGEILWAEFCRHMDLKEDEMKIKWNKI 116

Query: 102 DEEAKLTLIKEFVSEWGFNFQPLSPRSAKEMVE------EYVINGENSPAISSASSLISS 161
            EE KL L++EFV EW  +FQPLS  S KEMV+      +  I   +S ++SS S L   
Sbjct: 117 GEEEKLVLVREFVDEWAGDFQPLSITSVKEMVDQECLDSDKTIESSSSSSMSSFSGLFPG 176

BLAST of Carg19714 vs. TrEMBL
Match: tr|A0A0A0KYF6|A0A0A0KYF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179140 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.4e-57
Identity = 125/162 (77.16%), Postives = 134/162 (82.72%), Query Frame = 0

Query: 1   MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M+ AINLR P     IH+F+FQ  PSP LSR+R+P QITYCRKK SDADLASDLA EVAK
Sbjct: 1   MISAINLRLP-----IHSFRFQPSPSPTLSRNRMPRQITYCRKKLSDADLASDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQ EEAM KSRE LFTELC FLGLKSEETKR W KM+EEAKL L+KEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSREFLFTELCEFLGLKSEETKRKWMKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R  KEMVEEYV NGEN   ISSASS ISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSFISSLKKTMGL 156

BLAST of Carg19714 vs. TrEMBL
Match: tr|A0A1S3BZE3|A0A1S3BZE3_CUCME (LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 OS=Cucumis melo OX=3656 GN=LOC103494847 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.1e-54
Identity = 121/162 (74.69%), Postives = 133/162 (82.10%), Query Frame = 0

Query: 1   MMFAINLRFPRVHGQIHNFQFQSWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAK 60
           M+ AINLR PR  G+IHNF+FQ  PSP L R+R+P QITYCRKK SDADLA DLA EVAK
Sbjct: 1   MISAINLRPPR--GEIHNFRFQPSPSPTLFRNRMPRQITYCRKKLSDADLAFDLATEVAK 60

Query: 61  INTNLIQGEEAMTKSREILFTELCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFN 120
           INTNLIQ EEAM KSR  ++  +  FLGLKSEETKR WKKM+EEAKL L+KEFVSEWGFN
Sbjct: 61  INTNLIQREEAMKKSRAFVYRAV-EFLGLKSEETKRKWKKMEEEAKLRLVKEFVSEWGFN 120

Query: 121 FQPLSPRSAKEMVEEYVINGENSPAISSASSLISSLKKSIGL 163
           FQPLS R  KEMVEEYV NGEN   ISSASSLISSLKK++GL
Sbjct: 121 FQPLSGRCVKEMVEEYV-NGENLYGISSASSLISSLKKTMGL 158

BLAST of Carg19714 vs. TrEMBL
Match: tr|A0A2P4JJZ8|A0A2P4JJZ8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_62277 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 78/137 (56.93%), Postives = 98/137 (71.53%), Query Frame = 0

Query: 25  PSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTELC 84
           PS  L  ++   QI+  +KK SDA+LASDLA+EVAKINT+ +Q EEAM KS+E+LFTELC
Sbjct: 25  PSTTLLSNKPRTQISCAKKKISDAELASDLALEVAKINTHFVQREEAMKKSKELLFTELC 84

Query: 85  GFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFNFQPLSPRSAKEMVEEYVINGENSP 144
            +L LK EE K  W+KMDEE K  L+K FVS+W  +F PLS RS KE+VEEY++  EN  
Sbjct: 85  QYLALKGEEVKMKWRKMDEEEKWVLVKGFVSDWSMDFHPLSARSVKELVEEYLLE-ENPS 144

Query: 145 AISSASSLISSLKKSIG 162
           A SS S L   LK+ +G
Sbjct: 145 AKSSLSVLFPGLKRLMG 160

BLAST of Carg19714 vs. TrEMBL
Match: tr|A0A2P4MNE2|A0A2P4MNE2_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_42385 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 7.5e-32
Identity = 77/137 (56.20%), Postives = 97/137 (70.80%), Query Frame = 0

Query: 25  PSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTELC 84
           P   L  ++   QI+  +KK SDA+LASDLA+EVAKINT+ +Q EEAM KS+E+LFTELC
Sbjct: 25  PFTTLLSNKPRTQISCAKKKISDAELASDLALEVAKINTHFVQREEAMKKSKELLFTELC 84

Query: 85  GFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFNFQPLSPRSAKEMVEEYVINGENSP 144
            +L LK EE K  W+KMDEE K  L+K FVS+W  +F PLS RS KE+VEEY++  EN  
Sbjct: 85  QYLALKGEEVKMKWRKMDEEEKWVLVKGFVSDWSMDFHPLSARSVKELVEEYLLE-ENPS 144

Query: 145 AISSASSLISSLKKSIG 162
           A SS S L   LK+ +G
Sbjct: 145 AKSSLSVLFPGLKRLMG 160

BLAST of Carg19714 vs. TrEMBL
Match: tr|A0A2P4JK13|A0A2P4JK13_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_62266 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 76/139 (54.68%), Postives = 98/139 (70.50%), Query Frame = 0

Query: 23  SWPSPALSRSRLPCQITYCRKKFSDADLASDLAMEVAKINTNLIQGEEAMTKSREILFTE 82
           ++PS  L  ++   QI+  +KK SDA+LASDLA+EVAKINT+ +Q EEAM KS+E+LFTE
Sbjct: 23  TFPSTTLLSNKPRTQISCAKKKISDAELASDLALEVAKINTHFVQREEAMKKSKELLFTE 82

Query: 83  LCGFLGLKSEETKRCWKKMDEEAKLTLIKEFVSEWGFNFQPLSPRSAKEMVEEYVINGEN 142
           LC +L LK EE K  W+KMDEE K  L+K FVS+W  +F PLS RS KE+VEEY++  EN
Sbjct: 83  LCQYLALKGEEVKMKWRKMDEEEKWVLVKGFVSDWSMDFHPLSARSVKELVEEYLLE-EN 142

Query: 143 SPAISSASSLISSLKKSIG 162
             A  S S     LK+ +G
Sbjct: 143 PSAKFSLSVFFPGLKRLMG 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022922671.16.7e-8599.38uncharacterized protein LOC111430603 [Cucurbita moschata][more]
XP_023551996.18.8e-8598.15uncharacterized protein LOC111809798 [Cucurbita pepo subsp. pepo][more]
XP_022984827.12.4e-8296.30uncharacterized protein LOC111482994 [Cucurbita maxima][more]
XP_022149245.11.5e-6076.69uncharacterized protein LOC111017712 [Momordica charantia][more]
XP_004147515.12.0e-5777.16PREDICTED: uncharacterized protein LOC101216824 [Cucumis sativus] >KGN53879.1 hy... [more]
Match NameE-valueIdentityDescription
AT5G64480.12.0e-2246.03unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KYF6|A0A0A0KYF6_CUCSA1.4e-5777.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179140 PE=4 SV=1[more]
tr|A0A1S3BZE3|A0A1S3BZE3_CUCME9.1e-5474.69LOW QUALITY PROTEIN: uncharacterized protein LOC103494847 OS=Cucumis melo OX=365... [more]
tr|A0A2P4JJZ8|A0A2P4JJZ8_QUESU1.5e-3256.93Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_62277 PE=4 SV=1[more]
tr|A0A2P4MNE2|A0A2P4MNE2_QUESU7.5e-3256.20Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_42385 PE=4 SV=1[more]
tr|A0A2P4JK13|A0A2P4JK13_QUESU1.3e-3154.68Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_62266 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19714-RACarg19714-RAmRNA


The following gene(s) are paralogous to this gene:

None