CmoCh15G007560 (gene) Cucurbita moschata (Rifu)

NameCmoCh15G007560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTetratricopeptide repeat-like superfamily protein
LocationCmo_Chr15 : 3710874 .. 3711374 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATTGCCGGCATCCATCTCCCTCTGCCCAATCCCCCCGACGGAACCGACCACCGATGACTTAGCGGCGGTGAAGGCAGCGGCATGGGCCTGGTACCAGCATGGGTCCGGCTCCGATTCCAAGCCCATGCGCGAATTCGGCCTGACAAGGCCCACTACACACCCCAAGCCCTCTCGCTACAGGCTCGAGGCCGTCAGACGCTCCCAAACACCCTCTCTACTCGACAGCTACGAAGTCGCCAGCATTTCACGGCGGTTATCCGATCTCCTGGACCCCACTGATCGGAATAATTTTAGCCTCAGGAGCTTTGAATCTGAACTTTTGGATCTGGGTCGACAAATTGAAAGGAAGACCACGAAGCCCAAGAAGTTTAGAACAGGTTTGTGGCGGCGGAGACCGTCGGTGATGTGTGGCAAACTGGAGGATGTGGTCGTTGGCACTCTCGTCCATCCGCCCGGAAAACAACCGCGCCGGAGCACCGCCGGTCATGATCATTAA

mRNA sequence

ATGCCATTGCCGGCATCCATCTCCCTCTGCCCAATCCCCCCGACGGAACCGACCACCGATGACTTAGCGGCGGTGAAGGCAGCGGCATGGGCCTGGTACCAGCATGGGTCCGGCTCCGATTCCAAGCCCATGCGCGAATTCGGCCTGACAAGGCCCACTACACACCCCAAGCCCTCTCGCTACAGGCTCGAGGCCGTCAGACGCTCCCAAACACCCTCTCTACTCGACAGCTACGAAGTCGCCAGCATTTCACGGCGGTTATCCGATCTCCTGGACCCCACTGATCGGAATAATTTTAGCCTCAGGAGCTTTGAATCTGAACTTTTGGATCTGGGTCGACAAATTGAAAGGAAGACCACGAAGCCCAAGAAGTTTAGAACAGGTTTGTGGCGGCGGAGACCGTCGGTGATGTGTGGCAAACTGGAGGATGTGGTCGTTGGCACTCTCGTCCATCCGCCCGGAAAACAACCGCGCCGGAGCACCGCCGGTCATGATCATTAA

Coding sequence (CDS)

ATGCCATTGCCGGCATCCATCTCCCTCTGCCCAATCCCCCCGACGGAACCGACCACCGATGACTTAGCGGCGGTGAAGGCAGCGGCATGGGCCTGGTACCAGCATGGGTCCGGCTCCGATTCCAAGCCCATGCGCGAATTCGGCCTGACAAGGCCCACTACACACCCCAAGCCCTCTCGCTACAGGCTCGAGGCCGTCAGACGCTCCCAAACACCCTCTCTACTCGACAGCTACGAAGTCGCCAGCATTTCACGGCGGTTATCCGATCTCCTGGACCCCACTGATCGGAATAATTTTAGCCTCAGGAGCTTTGAATCTGAACTTTTGGATCTGGGTCGACAAATTGAAAGGAAGACCACGAAGCCCAAGAAGTTTAGAACAGGTTTGTGGCGGCGGAGACCGTCGGTGATGTGTGGCAAACTGGAGGATGTGGTCGTTGGCACTCTCGTCCATCCGCCCGGAAAACAACCGCGCCGGAGCACCGCCGGTCATGATCATTAA
BLAST of CmoCh15G007560 vs. TrEMBL
Match: A0A0A0KTL9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410720 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-54
Identity = 127/184 (69.02%), Postives = 137/184 (74.46%), Query Frame = 1

Query: 1   MPLPASISLCPIP------PTEPTT--DDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRP 60
           MP P S+SL P P      PTEPT   DDLAAVKAAAWAWYQHGSGS+SKPMREFGLTRP
Sbjct: 1   MPFP-SLSLNPFPDRKNPTPTEPTAAHDDLAAVKAAAWAWYQHGSGSESKPMREFGLTRP 60

Query: 61  TTHPKPSRYRLEAVRRS----------QTP-----SLLDSYEVASISRRLSDLLDPTDRN 120
            T PKPSRYRLEA  RS          QTP     SLLDSYE+ASISRRLSDLLDP DRN
Sbjct: 61  ITVPKPSRYRLEATNRSDPTILIQDKLQTPTPHTNSLLDSYEIASISRRLSDLLDPNDRN 120

Query: 121 NFSLRSFESELLDLGRQIERKTTKPKKFRTGLW---RRRPSVMCGKLEDVVVGTLVHPPG 159
           NFSLRSFESE++DLGRQIE KTTKP KF +GLW   RR+PS+MCGK+EDVV+ T  H   
Sbjct: 121 NFSLRSFESEIMDLGRQIEGKTTKPNKF-SGLWRWRRRKPSLMCGKMEDVVLATQKHHRR 180

BLAST of CmoCh15G007560 vs. TrEMBL
Match: B9H3C3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s08350g PE=4 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 1

Query: 18  TTDDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRPTTHPKPSRYRLEAVRR--------- 77
           +TDDLA VKAAAWAWY HGSGS+ +P+ EF +TR    P+PSRY+LEA R          
Sbjct: 24  STDDLALVKAAAWAWYHHGSGSEGRPICEFDVTRTRQAPRPSRYKLEATRTMKEDTMGSG 83

Query: 78  SQTP-------SLLDSYEVASISRRLSDL------------LDPTDRNNFSLRSFESELL 137
           S+TP       SLLD YEV SIS++L  L            +D  D +  S+ S +S+  
Sbjct: 84  SETPSPIRTDNSLLDKYEVESISKQLDYLIESSSNRFYGFKIDHLDHDQRSISSLDSDQT 143

Query: 138 DLGRQIERKTTKPKKFRTGLWRRRPSVMCGKLEDVVVGTLV 151
             G + ++K  K K F  G W R  SV+CG   DV    LV
Sbjct: 144 G-GMKQKKKDKKKKTFLQGFWPRH-SVVCGTKGDVDTRALV 182

BLAST of CmoCh15G007560 vs. TrEMBL
Match: A0A067JPK1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22519 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-17
Identity = 64/150 (42.67%), Postives = 86/150 (57.33%), Query Frame = 1

Query: 20  DDLAAVKAAAWAWYQHGSGSD-SKPMREFGLTRPTTHPKPSRYRLEA----VRRSQT--- 79
           +D++ VKAAAWAWYQHGSGSD  K MREF + R    PKPSRY+LEA    ++ S T   
Sbjct: 18  NDISIVKAAAWAWYQHGSGSDEEKLMREFDVYRTPQAPKPSRYKLEAMDKKIKESTTHTN 77

Query: 80  PSLLDSYEVASISRRLSDLLDPTDRNNFSLRSF-------ESELLDL----------GRQ 139
            SLLD+YE+ASIS+RL DL+   +  N S+R +       +  ++ +             
Sbjct: 78  NSLLDAYEIASISKRLDDLI--IESRNSSIRFYDRTFNGDQESIVSMSSPSPDGSYSSNS 137

Query: 140 IERKTTKPKKFRTGLWRRRPSVMCGKLEDV 145
             +   K K+F  GLW R P V+CG  +DV
Sbjct: 138 AMKSKKKKKRFLKGLWLRHP-VVCGTTKDV 164

BLAST of CmoCh15G007560 vs. TrEMBL
Match: A0A0R0GPZ9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G213100 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-17
Identity = 63/149 (42.28%), Postives = 78/149 (52.35%), Query Frame = 1

Query: 11  PIPPTEPTTDDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRPTTHPKPSRYRLEAVR--- 70
           P        +DLA VKAAAWAWYQH SGS  K + EF  T     P+PSRY+LEA+R   
Sbjct: 17  PSKDNNNNNNDLAFVKAAAWAWYQHNSGSKGKTISEFDATITRRVPRPSRYKLEAMRIMA 76

Query: 71  -----------RSQTPSLLDSYEVASISRRLSDLLDPTDRNNFSLRSFESELLDLGRQIE 130
                      R++  SLLD YEV SISR+LS L+    ++N +                
Sbjct: 77  QEAPSEGSPTIRAKKLSLLDEYEVQSISRQLSGLVAEDSKSN-NDNKHNKLFKGADNSTN 136

Query: 131 RKTTKPKKFRTGLWRRRPSVMCGKLEDVV 146
           R+TTK KK R G W    +V CG+ EDVV
Sbjct: 137 RRTTKKKKVRKGFWLGHGAV-CGREEDVV 163

BLAST of CmoCh15G007560 vs. TrEMBL
Match: A0A0B2S5I9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_016859 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.8e-17
Identity = 63/149 (42.28%), Postives = 78/149 (52.35%), Query Frame = 1

Query: 11  PIPPTEPTTDDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRPTTHPKPSRYRLEAVR--- 70
           P        +DLA VKAAAWAWYQH SGS  K + EF  T     P+PSRY+LEA+R   
Sbjct: 17  PSKDNNNNNNDLAFVKAAAWAWYQHNSGSKGKTISEFDATITRRVPRPSRYKLEAMRIMA 76

Query: 71  -----------RSQTPSLLDSYEVASISRRLSDLLDPTDRNNFSLRSFESELLDLGRQIE 130
                      R++  SLLD YEV SISR+LS L+    ++N +                
Sbjct: 77  QEAPSEGSPTIRAKKLSLLDEYEVQSISRQLSGLVAEDSKSN-NDNKHNKLFKGADNSTN 136

Query: 131 RKTTKPKKFRTGLWRRRPSVMCGKLEDVV 146
           R+TTK KK R G W    +V CG+ EDVV
Sbjct: 137 RRTTKKKKVRKGFWLGHGAV-CGREEDVV 163

BLAST of CmoCh15G007560 vs. TAIR10
Match: AT5G37550.1 (AT5G37550.1 unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 7.3e-12
Identity = 55/160 (34.38%), Postives = 75/160 (46.88%), Query Frame = 1

Query: 20  DDLAAVKAAAWAWYQHGSGSDSKPM-REFGLT-RPTTHPKPSRYRLEAVR---------- 79
           D+LA VKAAAWAWYQ   G   KPM REF L+ R    P+PSRY+LEA +          
Sbjct: 50  DELATVKAAAWAWYQRHEG---KPMMREFDLSKRAIRTPRPSRYKLEANKTMILSENKVS 109

Query: 80  ------------RSQTPSLLDSYEVASISRRLSDLLDPT-----DRNNFSLRSFESELLD 139
                        ++  SLLDSYE+ SIS+R+ +   PT     D       +   + L+
Sbjct: 110 KPHSNHFLRGDQETKLSSLLDSYEIKSISKRIDEGSLPTIGFWNDHGQHYDHNMLQKKLE 169

Query: 140 LGRQIERKTTKPKKFRT---GLWRRRPSVMCGKLEDVVVG 148
              + E    K    R    G+    P  +CG+ +DV +G
Sbjct: 170 YDSKQENGLVKKMSIRNLWKGMIMMAPRTVCGRSDDVDLG 206

BLAST of CmoCh15G007560 vs. TAIR10
Match: AT1G66190.1 (AT1G66190.1 unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 7.5e-09
Identity = 40/96 (41.67%), Postives = 51/96 (53.12%), Query Frame = 1

Query: 20  DDLAAVKAAAWAWYQHGSGSDSKP-MREFGLTRPTTHPKPSRYRLEAVRRSQTPSLLDSY 79
           DDLA VKAAAWAWY    G   KP MREF +TR    P+PSRY++EA     T +++ S 
Sbjct: 44  DDLAVVKAAAWAWYLRKEG---KPIMREFDVTRAQRIPRPSRYKIEA-----TKNMILSE 103

Query: 80  EVASISRRLSDLLDPTDRNNFSLR----SFESELLD 111
                  R+S    P    N+  R    ++ S LLD
Sbjct: 104 NRVLAENRVSSTKSPLWYTNYQFRGDQETYYSRLLD 131

BLAST of CmoCh15G007560 vs. NCBI nr
Match: gi|778708494|ref|XP_011656214.1| (PREDICTED: uncharacterized protein LOC105435673 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 2.5e-54
Identity = 127/184 (69.02%), Postives = 137/184 (74.46%), Query Frame = 1

Query: 1   MPLPASISLCPIP------PTEPTT--DDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRP 60
           MP P S+SL P P      PTEPT   DDLAAVKAAAWAWYQHGSGS+SKPMREFGLTRP
Sbjct: 1   MPFP-SLSLNPFPDRKNPTPTEPTAAHDDLAAVKAAAWAWYQHGSGSESKPMREFGLTRP 60

Query: 61  TTHPKPSRYRLEAVRRS----------QTP-----SLLDSYEVASISRRLSDLLDPTDRN 120
            T PKPSRYRLEA  RS          QTP     SLLDSYE+ASISRRLSDLLDP DRN
Sbjct: 61  ITVPKPSRYRLEATNRSDPTILIQDKLQTPTPHTNSLLDSYEIASISRRLSDLLDPNDRN 120

Query: 121 NFSLRSFESELLDLGRQIERKTTKPKKFRTGLW---RRRPSVMCGKLEDVVVGTLVHPPG 159
           NFSLRSFESE++DLGRQIE KTTKP KF +GLW   RR+PS+MCGK+EDVV+ T  H   
Sbjct: 121 NFSLRSFESEIMDLGRQIEGKTTKPNKF-SGLWRWRRRKPSLMCGKMEDVVLATQKHHRR 180

BLAST of CmoCh15G007560 vs. NCBI nr
Match: gi|566165569|ref|XP_002305221.2| (hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa])

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-19
Identity = 69/161 (42.86%), Postives = 88/161 (54.66%), Query Frame = 1

Query: 18  TTDDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRPTTHPKPSRYRLEAVRR--------- 77
           +TDDLA VKAAAWAWY HGSGS+ +P+ EF +TR    P+PSRY+LEA R          
Sbjct: 24  STDDLALVKAAAWAWYHHGSGSEGRPICEFDVTRTRQAPRPSRYKLEATRTMKEDTMGSG 83

Query: 78  SQTP-------SLLDSYEVASISRRLSDL------------LDPTDRNNFSLRSFESELL 137
           S+TP       SLLD YEV SIS++L  L            +D  D +  S+ S +S+  
Sbjct: 84  SETPSPIRTDNSLLDKYEVESISKQLDYLIESSSNRFYGFKIDHLDHDQRSISSLDSDQT 143

Query: 138 DLGRQIERKTTKPKKFRTGLWRRRPSVMCGKLEDVVVGTLV 151
             G + ++K  K K F  G W R  SV+CG   DV    LV
Sbjct: 144 G-GMKQKKKDKKKKTFLQGFWPRH-SVVCGTKGDVDTRALV 182

BLAST of CmoCh15G007560 vs. NCBI nr
Match: gi|743916440|ref|XP_011002196.1| (PREDICTED: uncharacterized protein LOC105109260 [Populus euphratica])

HSP 1 Score: 97.8 bits (242), Expect = 1.9e-17
Identity = 67/161 (41.61%), Postives = 85/161 (52.80%), Query Frame = 1

Query: 18  TTDDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRPTTHPKPSRYRLEAVR---------R 77
           +TDDLA  KAAAWAWY HGSGS+ +P+ EF +TR    P+PSRY+LEA R          
Sbjct: 21  STDDLALAKAAAWAWYHHGSGSEGRPICEFDVTRTRHAPRPSRYKLEATRIMKEDAMGSG 80

Query: 78  SQTP-------SLLDSYEVASISRRLSDL------------LDPTDRNNFSLRSFESELL 137
           S+TP       SLLD YEV SIS++L  L            +D  D +  S+ S +S+  
Sbjct: 81  SETPSPIRTDNSLLDKYEVESISKQLDYLIESSSNRFYGFKIDHLDHDQRSISSLDSD-- 140

Query: 138 DLGRQIERKTTKPKKFRTGLWRRRPSVMCGKLEDVVVGTLV 151
             G   ++K  K K F  G   R  SV+CG   DV    LV
Sbjct: 141 KTGEMKQKKDKKKKTFLQGFLLRH-SVVCGTRGDVDTRALV 178

BLAST of CmoCh15G007560 vs. NCBI nr
Match: gi|950990246|ref|XP_014504289.1| (PREDICTED: uncharacterized protein LOC106764529 [Vigna radiata var. radiata])

HSP 1 Score: 97.1 bits (240), Expect = 3.2e-17
Identity = 60/143 (41.96%), Postives = 80/143 (55.94%), Query Frame = 1

Query: 15  TEPTTDDLAAVKAAAWAWYQHGSGSDSKPMREFGLTRPTTHPKPSRYRLEAVR------- 74
           T   T+DL+ VKAAAWAWYQH SGS  K + EF  T     P+PSRYRLEA+R       
Sbjct: 24  TNTNTNDLSFVKAAAWAWYQHNSGSKGKTITEFHATVTRHEPRPSRYRLEAMRTAMEARE 83

Query: 75  -----RSQTPSLLDSYEVASISRRLSDLLDPTDRNNFSLRSFESELLDLGRQIERKTTKP 134
                 ++  SLLD YEV SISR+L+ L++ +++  F      ++      + + K  K 
Sbjct: 84  GFPNLHAKKLSLLDEYEVQSISRQLNSLVEDSNQKPF----IGADNNSTNGRTQTKKKKK 143

Query: 135 KKFRTGLWRRRPSVMCGKLEDVV 146
           KK R G W R   V+CG  +DVV
Sbjct: 144 KKVRKGFWLRH-GVVCGGEKDVV 161

BLAST of CmoCh15G007560 vs. NCBI nr
Match: gi|643712536|gb|KDP25797.1| (hypothetical protein JCGZ_22519 [Jatropha curcas])

HSP 1 Score: 96.7 bits (239), Expect = 4.1e-17
Identity = 64/150 (42.67%), Postives = 86/150 (57.33%), Query Frame = 1

Query: 20  DDLAAVKAAAWAWYQHGSGSD-SKPMREFGLTRPTTHPKPSRYRLEA----VRRSQT--- 79
           +D++ VKAAAWAWYQHGSGSD  K MREF + R    PKPSRY+LEA    ++ S T   
Sbjct: 18  NDISIVKAAAWAWYQHGSGSDEEKLMREFDVYRTPQAPKPSRYKLEAMDKKIKESTTHTN 77

Query: 80  PSLLDSYEVASISRRLSDLLDPTDRNNFSLRSF-------ESELLDL----------GRQ 139
            SLLD+YE+ASIS+RL DL+   +  N S+R +       +  ++ +             
Sbjct: 78  NSLLDAYEIASISKRLDDLI--IESRNSSIRFYDRTFNGDQESIVSMSSPSPDGSYSSNS 137

Query: 140 IERKTTKPKKFRTGLWRRRPSVMCGKLEDV 145
             +   K K+F  GLW R P V+CG  +DV
Sbjct: 138 AMKSKKKKKRFLKGLWLRHP-VVCGTTKDV 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KTL9_CUCSA1.7e-5469.02Uncharacterized protein OS=Cucumis sativus GN=Csa_5G410720 PE=4 SV=1[more]
B9H3C3_POPTR1.4e-1942.86Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s08350g P... [more]
A0A067JPK1_JATCU2.9e-1742.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22519 PE=4 SV=1[more]
A0A0R0GPZ9_SOYBN3.8e-1742.28Uncharacterized protein OS=Glycine max GN=GLYMA_14G213100 PE=4 SV=1[more]
A0A0B2S5I9_GLYSO3.8e-1742.28Uncharacterized protein OS=Glycine soja GN=glysoja_016859 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G37550.17.3e-1234.38 unknown protein[more]
AT1G66190.17.5e-0941.67 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778708494|ref|XP_011656214.1|2.5e-5469.02PREDICTED: uncharacterized protein LOC105435673 [Cucumis sativus][more]
gi|566165569|ref|XP_002305221.2|2.0e-1942.86hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa][more]
gi|743916440|ref|XP_011002196.1|1.9e-1741.61PREDICTED: uncharacterized protein LOC105109260 [Populus euphratica][more]
gi|950990246|ref|XP_014504289.1|3.2e-1741.96PREDICTED: uncharacterized protein LOC106764529 [Vigna radiata var. radiata][more]
gi|643712536|gb|KDP25797.1|4.1e-1742.67hypothetical protein JCGZ_22519 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G007560.1CmoCh15G007560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34665FAMILY NOT NAMEDcoord: 18..145
score: 5.9
NoneNo IPR availablePANTHERPTHR34665:SF2SUBFAMILY NOT NAMEDcoord: 18..145
score: 5.9