Carg18258 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18258
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Tetratricopeptide repeat-like superfamily protein
Location	Cucurbita_argyrosperma_scaffold_120 : 258007 .. 258543 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATTACCATCCTTCTCCCTCAACCCCTTCCCCGACCGGAAGAACCCAACGCCGACACAACCCACCCTCGCCGCCGACGACTTAGCGGCGGAGAAGGCGGCGGCCTGGGCATGGTACCATCATGGGTCAGGCTCCGAATCCAAGCCCATGCGGGAATTCGGCCTCACCAGGCCCATCTCTGTCCCCAAGCCCTCTCGCTACAGGCTCGAGGCCATAAGAATCGCCCAAAATTTCTTTCAGGACAATTCACAAACACCTTGTCTGCACAATTCTCTTCTCGACAGCTACGAAGTCGCGAGCATTTCTAGGCGCATATCTGACTTATTAGACCCCACTGATCGTAACAATTTTAGCCTTAGGAGCTTCGAATCTGAAATTTTGGATCTGGGTCGAGAAATTGAGAGGAAATCCACCAAGCCCAAGAAATTTGGAGCCTTCTGGCGCAGACGGTCGATGATGTGCGGCAAAATTGAGGATGTGGCTCTTGGCAGCCTCGTCCGGCCGCCGGGAAAACAACAGCCAAGGCCGACGTGA

mRNA sequence

ATGCCATTACCATCCTTCTCCCTCAACCCCTTCCCCGACCGGAAGAACCCAACGCCGACACAACCCACCCTCGCCGCCGACGACTTAGCGGCGGAGAAGGCGGCGGCCTGGGCATGGTACCATCATGGGTCAGGCTCCGAATCCAAGCCCATGCGGGAATTCGGCCTCACCAGGCCCATCTCTGTCCCCAAGCCCTCTCGCTACAGGCTCGAGGCCATAAGAATCGCCCAAAATTTCTTTCAGGACAATTCACAAACACCTTGTCTGCACAATTCTCTTCTCGACAGCTACGAAGTCGCGAGCATTTCTAGGCGCATATCTGACTTATTAGACCCCACTGATCGTAACAATTTTAGCCTTAGGAGCTTCGAATCTGAAATTTTGGATCTGGGTCGAGAAATTGAGAGGAAATCCACCAAGCCCAAGAAATTTGGAGCCTTCTGGCGCAGACGGTCGATGATGTGCGGCAAAATTGAGGATGTGGCTCTTGGCAGCCTCGTCCGGCCGCCGGGAAAACAACAGCCAAGGCCGACGTGA

Coding sequence (CDS)

ATGCCATTACCATCCTTCTCCCTCAACCCCTTCCCCGACCGGAAGAACCCAACGCCGACACAACCCACCCTCGCCGCCGACGACTTAGCGGCGGAGAAGGCGGCGGCCTGGGCATGGTACCATCATGGGTCAGGCTCCGAATCCAAGCCCATGCGGGAATTCGGCCTCACCAGGCCCATCTCTGTCCCCAAGCCCTCTCGCTACAGGCTCGAGGCCATAAGAATCGCCCAAAATTTCTTTCAGGACAATTCACAAACACCTTGTCTGCACAATTCTCTTCTCGACAGCTACGAAGTCGCGAGCATTTCTAGGCGCATATCTGACTTATTAGACCCCACTGATCGTAACAATTTTAGCCTTAGGAGCTTCGAATCTGAAATTTTGGATCTGGGTCGAGAAATTGAGAGGAAATCCACCAAGCCCAAGAAATTTGGAGCCTTCTGGCGCAGACGGTCGATGATGTGCGGCAAAATTGAGGATGTGGCTCTTGGCAGCCTCGTCCGGCCGCCGGGAAAACAACAGCCAAGGCCGACGTGA

Protein sequence

MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPISVPKPSRYRLEAIRIAQNFFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSLRSFESEILDLGREIERKSTKPKKFGAFWRRRSMMCGKIEDVALGSLVRPPGKQQPRPT

Homology

[Close]

BLAST of Carg18258 vs. NCBI nr
Match: XP_023541987.1 (uncharacterized protein LOC111801939 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352.4 bits (903), Expect = 8.7e-94
Identity = 170/178 (95.51%), Postives = 175/178 (98.31%), Query Frame = 0


Query: 1   MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPI 60
           MPLPSFS NPFPDRK+PTPTQPT+AADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRP+
Sbjct: 1   MPLPSFSFNPFPDRKSPTPTQPTVAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPV 60

Query: 61  SVPKPSRYRLEAIRIAQNFFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSL 120
           SVPKPSRYRLEAIRIAQNFFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSL
Sbjct: 61  SVPKPSRYRLEAIRIAQNFFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSL 120

Query: 121 RSFESEILDLGREIERKSTKPKKFGAFWRRRSMMCGKIEDVALGSLVRPPGKQQPRPT 179
           RSFESEILDLGREIERKSTKPKKFG FWRRRS+MCGKIEDVA+GSLVRPPGKQQ RPT
Sbjct: 121 RSFESEILDLGREIERKSTKPKKFGGFWRRRSVMCGKIEDVAIGSLVRPPGKQQQRPT 178

[Close]

BLAST of Carg18258 vs. NCBI nr
Match: XP_022959523.1 (uncharacterized protein LOC111460520 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 1.6e-92
Identity = 170/178 (95.51%), Postives = 173/178 (97.19%), Query Frame = 0


Query: 1   MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPI 60
           MPLPSFS N FPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRP+
Sbjct: 1   MPLPSFSFNHFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPV 60

Query: 61  SVPKPSRYRLEAIRIAQNFFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSL 120
           SVPKPSRYRLEAIRIAQ FFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSL
Sbjct: 61  SVPKPSRYRLEAIRIAQTFFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSL 120

Query: 121 RSFESEILDLGREIERKSTKPKKFGAFWRRRSMMCGKIEDVALGSLVRPPGKQQPRPT 179
           RSFESEILDLGREIERKSTKPKKFGAFWRRRS+MCGKIEDVA+GSLVR PGKQQ RPT
Sbjct: 121 RSFESEILDLGREIERKSTKPKKFGAFWRRRSVMCGKIEDVAIGSLVRSPGKQQQRPT 178

[Close]

BLAST of Carg18258 vs. NCBI nr
Match: XP_022990803.1 (uncharacterized protein LOC111487585 [Cucurbita maxima])

HSP 1 Score: 342.0 bits (876), Expect = 1.2e-90
Identity = 166/178 (93.26%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPI 60
           MPLPSFS NPF DRK+PTPTQPT+AADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRP+
Sbjct: 1   MPLPSFSFNPFSDRKSPTPTQPTVAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPV 60

Query: 61  SVPKPSRYRLEAIRIAQNFFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPTDRNNFSL 120
           SVPKPSRYRLEAIRIAQ F QDNSQTPCLHNSLLDSYEVASISR ISDLLDPTDRNNFSL
Sbjct: 61  SVPKPSRYRLEAIRIAQTFIQDNSQTPCLHNSLLDSYEVASISRGISDLLDPTDRNNFSL 120

Query: 121 RSFESEILDLGREIERKSTKPKKFGAFWRRRSMMCGKIEDVALGSLVRPPGKQQPRPT 179
           RSFESEILDLGREIERKSTKPKKFG FWRRRS+MCGKIEDVA+GSLVR PGKQQPRPT
Sbjct: 121 RSFESEILDLGREIERKSTKPKKFGGFWRRRSVMCGKIEDVAIGSLVRSPGKQQPRPT 178

[Close]

BLAST of Carg18258 vs. NCBI nr
Match: XP_011656214.1 (PREDICTED: uncharacterized protein LOC105435673 [Cucumis sativus] >KGN51031.1 hypothetical protein Csa_5G410720 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 6.1e-63
Identity = 128/172 (74.42%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 1   MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPI 60
           MP PS SLNPFPDRKNPTPT+PT A DDLAA KAAAWAWY HGSGSESKPMREFGLTRPI
Sbjct: 1   MPFPSLSLNPFPDRKNPTPTEPTAAHDDLAAVKAAAWAWYQHGSGSESKPMREFGLTRPI 60

Query: 61  SVPKPSRYRLEAIRIAQN--FFQDNSQTPCLH-NSLLDSYEVASISRRISDLLDPTDRNN 120
           +VPKPSRYRLEA   +      QD  QTP  H NSLLDSYE+ASISRR+SDLLDP DRNN
Sbjct: 61  TVPKPSRYRLEATNRSDPTILIQDKLQTPTPHTNSLLDSYEIASISRRLSDLLDPNDRNN 120

Query: 121 FSLRSFESEILDLGREIERKSTKPKKFGAFWRRR----SMMCGKIEDVALGS 166
           FSLRSFESEI+DLGR+IE K+TKP KF   WR R    S+MCGK+EDV L +
Sbjct: 121 FSLRSFESEIMDLGRQIEGKTTKPNKFSGLWRWRRRKPSLMCGKMEDVVLAT 172

[Close]

BLAST of Carg18258 vs. NCBI nr
Match: XP_016902559.1 (PREDICTED: uncharacterized protein LOC103499304 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 3.7e-60
Identity = 127/184 (69.02%), Postives = 144/184 (78.26%), Query Frame = 0


Query: 1   MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPI 60
           MP PSFSLNPFPDR  PTPT+ T A D+LAA KAAAWAWY HGSGSESKPMREFGLTRPI
Sbjct: 1   MPFPSFSLNPFPDRDKPTPTESTAAHDELAAVKAAAWAWYQHGSGSESKPMREFGLTRPI 60

Query: 61  SVPKPSRYRLEAIRIAQNF-FQDNSQTPCLH-NSLLDSYEVASISRRISDLLDPTDRNNF 120
           SVPKPSRYRLEA   + +   +DN QTP  + NSLLDSYE+ASISRR+SDLLDP DRNNF
Sbjct: 61  SVPKPSRYRLEATNRSPSISIEDNLQTPSPNSNSLLDSYEIASISRRLSDLLDPNDRNNF 120

Query: 121 SLRSFESEILDLGREIERKSTKPKKFGAFW----RRRSMMCGKIEDVALGSLVRPPGKQQ 179
           SLRSFESEI+DLGR+IE K+TK  KF   W    R+ S+MCGK+EDV L +  + P +  
Sbjct: 121 SLRSFESEIMDLGRQIEGKTTKANKFSGLWRWQRRKPSLMCGKMEDVVLAT-KKHPRRPM 180

[Close]

BLAST of Carg18258 vs. TAIR10
Match: AT5G37550.1 (unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-12
Identity = 59/171 (34.50%), Postives = 82/171 (47.95%), Query Frame = 0


Query: 33  KAAAWAWYHHGSGSESKP-MREFGLT-RPISVPKPSRYRLEAIRI------------AQN 92
           KAAAWAWY      E KP MREF L+ R I  P+PSRY+LEA +             + +
Sbjct: 56  KAAAWAWYQR---HEGKPMMREFDLSKRAIRTPRPSRYKLEANKTMILSENKVSKPHSNH 115

Query: 93  FFQDNSQTPCLHNSLLDSYEVASISRRISDLLDPT-----DRNNFSLRSFESEILDLGRE 152
           F + + +T    +SLLDSYE+ SIS+RI +   PT     D       +   + L+   +
Sbjct: 116 FLRGDQETKL--SSLLDSYEIKSISKRIDEGSLPTIGFWNDHGQHYDHNMLQKKLEYDSK 175

Query: 153 IERKSTKPKKFGAFWRRRSMM-----CGKIEDVALGSLVR-PPGKQQPRPT 179
            E    K       W+   MM     CG+ +DV LG+  R  P  ++  PT
Sbjct: 176 QENGLVKKMSIRNLWKGMIMMAPRTVCGRSDDVDLGAYHRVGPRTKKVAPT 221

[Close]

BLAST of Carg18258 vs. TAIR10
Match: AT1G66190.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 2.4e-05
Identity = 29/93 (31.18%), Postives = 44/93 (47.31%), Query Frame = 0


Query: 37  WAWYHHGSGSESKP-MREFGLTRPISVPKPSRYRLEAIR--------------------- 96
           WAWY      E KP MREF +TR   +P+PSRY++EA +                     
Sbjct: 54  WAWYLR---KEGKPIMREFDVTRAQRIPRPSRYKIEATKNMIXXXXXXXXXXXXXSTKSP 113

Query: 97  IAQNFFQDNSQTPCLHNSLLDSYEVASISRRIS 108
           +    +Q        ++ LLD+YE  +IS+R++
Sbjct: 114 LWYTNYQFRGDQETYYSRLLDTYETKNISKRLN 143

[Close]

BLAST of Carg18258 vs. TrEMBL
Match: tr|A0A0A0KTL9|A0A0A0KTL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G410720 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 4.0e-63
Identity = 128/172 (74.42%), Postives = 139/172 (80.81%), Query Frame = 0


Query: 1   MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPI 60
           MP PS SLNPFPDRKNPTPT+PT A DDLAA KAAAWAWY HGSGSESKPMREFGLTRPI
Sbjct: 1   MPFPSLSLNPFPDRKNPTPTEPTAAHDDLAAVKAAAWAWYQHGSGSESKPMREFGLTRPI 60

Query: 61  SVPKPSRYRLEAIRIAQN--FFQDNSQTPCLH-NSLLDSYEVASISRRISDLLDPTDRNN 120
           +VPKPSRYRLEA   +      QD  QTP  H NSLLDSYE+ASISRR+SDLLDP DRNN
Sbjct: 61  TVPKPSRYRLEATNRSDPTILIQDKLQTPTPHTNSLLDSYEIASISRRLSDLLDPNDRNN 120

Query: 121 FSLRSFESEILDLGREIERKSTKPKKFGAFWRRR----SMMCGKIEDVALGS 166
           FSLRSFESEI+DLGR+IE K+TKP KF   WR R    S+MCGK+EDV L +
Sbjct: 121 FSLRSFESEIMDLGRQIEGKTTKPNKFSGLWRWRRRKPSLMCGKMEDVVLAT 172

[Close]

BLAST of Carg18258 vs. TrEMBL
Match: tr|A0A1S4E2U9|A0A1S4E2U9_CUCME (uncharacterized protein LOC103499304 OS=Cucumis melo OX=3656 GN=LOC103499304 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.5e-60
Identity = 127/184 (69.02%), Postives = 144/184 (78.26%), Query Frame = 0


Query: 1   MPLPSFSLNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPI 60
           MP PSFSLNPFPDR  PTPT+ T A D+LAA KAAAWAWY HGSGSESKPMREFGLTRPI
Sbjct: 1   MPFPSFSLNPFPDRDKPTPTESTAAHDELAAVKAAAWAWYQHGSGSESKPMREFGLTRPI 60

Query: 61  SVPKPSRYRLEAIRIAQNF-FQDNSQTPCLH-NSLLDSYEVASISRRISDLLDPTDRNNF 120
           SVPKPSRYRLEA   + +   +DN QTP  + NSLLDSYE+ASISRR+SDLLDP DRNNF
Sbjct: 61  SVPKPSRYRLEATNRSPSISIEDNLQTPSPNSNSLLDSYEIASISRRLSDLLDPNDRNNF 120

Query: 121 SLRSFESEILDLGREIERKSTKPKKFGAFW----RRRSMMCGKIEDVALGSLVRPPGKQQ 179
           SLRSFESEI+DLGR+IE K+TK  KF   W    R+ S+MCGK+EDV L +  + P +  
Sbjct: 121 SLRSFESEIMDLGRQIEGKTTKANKFSGLWRWQRRKPSLMCGKMEDVVLAT-KKHPRRPM 180

[Close]

BLAST of Carg18258 vs. TrEMBL
Match: tr|A0A2K2ARR1|A0A2K2ARR1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G085100v3 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-22
Identity = 76/184 (41.30%), Postives = 103/184 (55.98%), Query Frame = 0


Query: 3   LPSFS-LNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPIS 62
           +PS +  N F ++K P     T   DDLA  KAAAWAWYHHGSGSE +P+ EF +TR   
Sbjct: 1   MPSITPFNIFMEKKKPKGGGST---DDLALVKAAAWAWYHHGSGSEGRPICEFDVTRTRQ 60

Query: 63  VPKPSRYRLEAIR-IAQNFFQDNSQTPC---LHNSLLDSYEVASISRRISDL-------- 122
            P+PSRY+LEA R + ++     S+TP      NSLLD YEV SIS+++  L        
Sbjct: 61  APRPSRYKLEATRTMKEDTMGSGSETPSPIRTDNSLLDKYEVESISKQLDYLIESSSNRF 120

Query: 123 ----LDPTDRNNFSLRSFESEILDLGREIERKSTKPKKF-GAFWRRRSMMCGKIEDVALG 169
               +D  D +  S+ S +S+    G + ++K  K K F   FW R S++CG   DV   
Sbjct: 121 YGFKIDHLDHDQRSISSLDSDQTG-GMKQKKKDKKKKTFLQGFWPRHSVVCGTKGDVDTR 180

[Close]

BLAST of Carg18258 vs. TrEMBL
Match: tr|A0A2P4M9Z3|A0A2P4M9Z3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14879 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 8.5e-21
Identity = 70/166 (42.17%), Postives = 95/166 (57.23%), Query Frame = 0


Query: 8   LNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPISVPKPSR 67
           +NPF +RK         + D+LA  KAAAWAWY HGSGSE K MREF +TR    P PS+
Sbjct: 1   MNPFKERKKTRG-----STDELAVGKAAAWAWYQHGSGSEGKQMREFDITRSRQAPGPSQ 60

Query: 68  YRLEAIRIAQNFFQ---DNSQTPCLH--NSLLDSYEVASISRRISDLLDPTDRNNFSLR- 127
           YRLEA+R A+   +    +S    +H  NSLLD++E+ SISR++ D L  +  NNF  R 
Sbjct: 61  YRLEAMRTAKEAMEGSRSSSAHSSIHTSNSLLDAFEIESISRQL-DCLVGSSGNNFYTRF 120

Query: 128 ----SFESEILDLGREIER--KSTKPKKFGAFWRRRSMMCGKIEDV 162
               +   E ++L  +++      K KK   FW R ++ CG  EDV
Sbjct: 121 LAGDNVHQEHVNLLDKVDTGGMKKKNKKVKGFWPRHAIACGTREDV 160

[Close]

BLAST of Carg18258 vs. TrEMBL
Match: tr|A0A2P4KZP6|A0A2P4KZP6_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14878 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.5e-20
Identity = 70/166 (42.17%), Postives = 94/166 (56.63%), Query Frame = 0


Query: 8   LNPFPDRKNPTPTQPTLAADDLAAEKAAAWAWYHHGSGSESKPMREFGLTRPISVPKPSR 67
           +NPF  RK         + ++LA  KAAAWAWY HGSGSE K MREF +TR    P PSR
Sbjct: 1   MNPFMKRKKTRG-----STNELAVVKAAAWAWYQHGSGSEGKQMREFDITRSRQAPGPSR 60

Query: 68  YRLEAIRIAQNFFQ---DNSQTPCLH--NSLLDSYEVASISRRISDLLDPTDRNNFSLR- 127
           YRLEA+R A+   +    +S+   +H  NSLLD++E+ SISR++ D L  +  NNF  R 
Sbjct: 61  YRLEAMRTAKEAMEGSRSSSEHSSIHTSNSLLDAFEIESISRQL-DCLVGSSGNNFYTRF 120

Query: 128 ----SFESEILDLGREIER--KSTKPKKFGAFWRRRSMMCGKIEDV 162
               +   E + L  +++      K KK   FW R ++ CG  EDV
Sbjct: 121 LAGDNVHQENVKLLDKVDTGGMKKKNKKVKGFWPRHAIACGTREDV 160

The following BLAST results are available for this feature:

BLAST of Carg18258 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023541987.1	8.7e-94	95.51	uncharacterized protein LOC111801939 [Cucurbita pepo subsp. pepo]	[more]
XP_022959523.1	1.6e-92	95.51	uncharacterized protein LOC111460520 [Cucurbita moschata]	[more]
XP_022990803.1	1.2e-90	93.26	uncharacterized protein LOC111487585 [Cucurbita maxima]	[more]
XP_011656214.1	6.1e-63	74.42	PREDICTED: uncharacterized protein LOC105435673 [Cucumis sativus] >KGN51031.1 hy...	[more]
XP_016902559.1	3.7e-60	69.02	PREDICTED: uncharacterized protein LOC103499304 [Cucumis melo]	[more]

BLAST of Carg18258 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37550.1	3.5e-12	34.50	unknown protein	[more]
AT1G66190.1	2.4e-05	31.18	unknown protein	[more]

BLAST of Carg18258 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18258 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTL9\|A0A0A0KTL9_CUCSA	4.0e-63	74.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G410720 PE=4 SV=1	[more]
tr\|A0A1S4E2U9\|A0A1S4E2U9_CUCME	2.5e-60	69.02	uncharacterized protein LOC103499304 OS=Cucumis melo OX=3656 GN=LOC103499304 PE=...	[more]
tr\|A0A2K2ARR1\|A0A2K2ARR1_POPTR	5.9e-22	41.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G085100v3 PE=...	[more]
tr\|A0A2P4M9Z3\|A0A2P4M9Z3_QUESU	8.5e-21	42.17	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14879 PE=4 SV=1	[more]
tr\|A0A2P4KZP6\|A0A2P4KZP6_QUESU	2.5e-20	42.17	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_14878 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18258-RA	Carg18258-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR34665:SF2	SUBFAMILY NOT NAMED	coord: 8..169
None	No IPR available	PANTHER	PTHR34665	FAMILY NOT NAMED	coord: 8..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18258	Cla019778	Watermelon (97103) v1	carwmB0523
Carg18258	Csa5G410720	Cucumber (Chinese Long) v2	carcuB0556
Carg18258	MELO3C022825	Melon (DHL92) v3.5.1	carmeB0531
Carg18258	ClCG03G008850	Watermelon (Charleston Gray)	carwcgB0512
Carg18258	CSPI05G14780	Wild cucumber (PI 183967)	carcpiB0562
Carg18258	Cucsa.034710	Cucumber (Gy14) v1	carcgyB0604
Carg18258	CmaCh04G023060	Cucurbita maxima (Rimu)	carcmaB0738
Carg18258	CmaCh15G007330	Cucurbita maxima (Rimu)	carcmaB0737
Carg18258	CmoCh04G024090	Cucurbita moschata (Rifu)	carcmoB0716
Carg18258	CmoCh15G007560	Cucurbita moschata (Rifu)	carcmoB0714
Carg18258	Lsi09G009440	Bottle gourd (USVL1VR-Ls)	carlsiB480
Carg18258	Cp4.1LG13g05250	Cucurbita pepo (Zucchini)	carcpeB0746
Carg18258	Cp4.1LG01g19950	Cucurbita pepo (Zucchini)	carcpeB0747
Carg18258	CsGy5G014670	Cucumber (Gy14) v2	carcgybB0533
Carg18258	MELO3C022825.2	Melon (DHL92) v3.6.1	carmedB0536
Carg18258	CsaV3_5G023910	Cucumber (Chinese Long) v3	carcucB0564
Carg18258	Cla97C03G060030	Watermelon (97103) v2	carwmbB0554
Carg18258	Bhi12G001088	Wax gourd	carwgoB0637

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18258	Carg01474	Silver-seed gourd	carcarB500

The following block(s) are covering this gene:

None