CmoCh15G007240 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G007240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description30S ribosomal protein S13
LocationCmo_Chr15 : 3534207 .. 3536121 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAAGGTTGGCATTGAAACCAGAGAGCCGCTCGGAGTTCAATCGGATTGAAGAAATCCACTAATGTGCTGATTGCCGTTTGGTGAGTGAGAAGTTTGAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTAAATCTTCTCTTCTTTGGACTTCAACTATGGAGTTCCTTTCTTCAATTTTACCTTCTTCCTCCGTTCAATTACTTACTTCGGCTCTACAGTTTCCACTTCGTGCTTTAATTTCATGTATTTTTTTCGATGTGGAGGGATTTTGCCCAATTATATTTATCCTGCGGAACTTGGCTATTGTCTTCTTGATTTCATATTGTATCTGTTTCTTGATTTCTGCATTCCCTTTGCTCGTGAGTATTGCAGCTTGATTCTGTGAAACTATTATTACAGAACCTACTCTCAACTCAGCTTCTTTTTTTTTTTCTTTCGTTTGAATTTCCTTTTTGTGATGCTCTACACTCAGTTTGTCCGTAGTTTTTCCTCGGTTACAGTACTAGACTCTGCCTCTACACTTCATTGAACAGTGTGATGAAACAAAAATTCCTGCGTTTCGTTTCCCTAATTGCTAGTGTCTAAATGAATCAAATTCAGGATCCCAATTCCCATTTTCCTCACCCTTTCTGTGCATGATGGATTATAAAGATTAAGCAGATATAATTGGACGAAAAGAGTAGATTATGGCAACGAATGGCTGACCTTAAATGGAAATTTGACTTGCTAGTCTATGCTGGACAGGATAAAGTTTGTATCCCATTAGCTTAAGATTTTGAGTTGATTTGTGATTTAACTTGGTATCGGAGTAGGAGGTCCGGTGTTTAACTCCTACGAAGTTTCAAACTCACATGATATCCCTGTTTCTTCTTGAATGATTCCCTCATTTTTTGTTCCTTCAATTTTGAACCATTCAGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTCTTTCTCTATCTCTGTGTGTGTGTGTGTTAGAATTACAGACGTTGGTTGTCTCTGTTTCTTTTGTGAAGTGCTTAAAAATGTAATTGTTGGGTTTTGCAGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGAGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGCCTTTGCCATTGAATCTCTTGTAAAAGCTTAGAGACGTATTGTTTTAAACTCTGGATTTGCATCTGATTTCCTCATGAAAATACTTTTGTGTTATTGCTGTGTCATGTTCTATCTTACAGATGCGCTCACCCTCTTCAAATGCTCGAGTAGTTAATGAGGGGTCCATTATTATAACTCATTTTACTAACACAATCTTTTCTATTGGATCTCTGGGGACGGTGAACTAGTCTAAACCATCAACAAGATCGCTAATAAAATGATATGCTCTGTGGAGGTATTGTTCGTCAGCGCCAGGCCTTGGACGTGGCATCAATTTGAATAAAGAGGCTTTGGGGAGAACCAATTTCAATCGCGATAAAGTAAGTGGG

mRNA sequence

GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAAGGTTGGCATTGAAACCAGAGAGCCGCTCGGAGTTCAATCGGATTGAAGAAATCCACTAATGTGCTGATTGCCGTTTGGTGAGTGAGAAGTTTGAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGAGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGCCTTTGCCATTGAATCTCTTGTAAAAGCTTAGAGACGTATTGTTTTAAACTCTGGATTTGCATCTGATTTCCTCATGAAAATACTTTTGTGTTATTGCTGTGTCATGTTCTATCTTACAGATGCGCTCACCCTCTTCAAATGCTCGAGTAGTTAATGAGGGGTCCATTATTATAACTCATTTTACTAACACAATCTTTTCTATTGGATCTCTGGGGACGGTGAACTAGTCTAAACCATCAACAAGATCGCTAATAAAATGATATGCTCTGTGGAGGTATTGTTCGTCAGCGCCAGGCCTTGGACGTGGCATCAATTTGAATAAAGAGGCTTTGGGGAGAACCAATTTCAATCGCGATAAAGTAAGTGGG

Coding sequence (CDS)

ATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGAGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA
Homology
[Close]
BLAST of CmoCh15G007240 vs. Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.0e-65
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 60
           MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 120
           + YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of CmoCh15G007240 vs. Swiss-Prot
Match: RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2)

HSP 1 Score: 158.7 bits (400), Expect = 5.6e-38
Identity = 88/154 (57.14%), Postives = 111/154 (72.08%), Query Frame = 1 

Query: 5   LALPVAPS-LSLICNSRTSNPLSNAISFPISNPRV---PGLQIKCVRVGGVEIPNNKRVL 64
           +++P+A S L L    R+S+     +SFP          GLQI+C+R+GGVEIPN+KRV 
Sbjct: 7   VSVPIATSSLPLSARGRSSS-----VSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVE 66

Query: 65  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 124
           YSLQYIHGIGR+ +++IL DLN +NK+TKDL+EEE+I +R E          +RFN +AI
Sbjct: 67  YSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRKE----------KRFNRVAI 126

Query: 125 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKG 155
            RLKEI+CYRGIRH  GLP RGQRTKNNCRTLKG
Sbjct: 127 ERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG 145

[Close]
BLAST of CmoCh15G007240 vs. Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 5.1e-31
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 20  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL  +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]
BLAST of CmoCh15G007240 vs. Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.1e-29
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 1 

Query: 47  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLAEEELISIRDEVSK 106
           R+ G++IP++KRV+ +L YI+G+G+  ++KIL +LN+ + I  K+L E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

[Close]
BLAST of CmoCh15G007240 vs. Swiss-Prot
Match: RS13_ONYPE (30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain OY-M) GN=rpsM PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-28
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = 1 

Query: 47  RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLAEEELISIRDEVSK 106
           R+ G++IP++KRV+ +L YI+G+G   + KIL +LN++  I  K+L E++L ++R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  AIAGKKK
Sbjct: 63  YNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121

[Close]
BLAST of CmoCh15G007240 vs. TrEMBL
Match: A0A0A0KN28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 6.6e-78
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60
           MA T A+P+A SLSLI NSR  NPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]
BLAST of CmoCh15G007240 vs. TrEMBL
Match: M5XM26_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012483mg PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.8e-68
Identity = 134/166 (80.72%), Postives = 148/166 (89.16%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNP-RVPGLQIKCVRVGGVEIPNNKRV 60
           MA TLA+P+APSLS+ICN R  NPLSN++SFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSLSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  LYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA 120
            +SLQY+HGIGR  A+ IL DLN+ENKITKDL+EEEL  IRDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]
BLAST of CmoCh15G007240 vs. TrEMBL
Match: V4SI28_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002692mg PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.2e-68
Identity = 133/169 (78.70%), Postives = 151/169 (89.35%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNA-ISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 60
           M  TLA+PVAP+LS+ICN   +N L+NA +SFP+S  P+ PGL I+C RVGGVEIPNNKR
Sbjct: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60

Query: 61  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 120
           + YSLQYIHG+GR  A++IL DL +ENKITKD++EEELI+IRDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AIRRLKEIQCYRGIRHIQGLPCRGQ TKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169

[Close]
BLAST of CmoCh15G007240 vs. TrEMBL
Match: A0A067GQ31_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030930mg PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 6.2e-68
Identity = 133/169 (78.70%), Postives = 151/169 (89.35%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNA-ISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 60
           M  TLA+PVAP+LS+ICN   +N L+NA +SFP+S  P+ PGL I+C RVGGVEIPNNKR
Sbjct: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60

Query: 61  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 120
           + YSLQYIHG+GR  A++IL DL +ENKITKD++EEELI+IRDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AIRRLKEIQCYRGIRHIQGLPCRGQ TKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169

[Close]
BLAST of CmoCh15G007240 vs. TrEMBL
Match: W9QNB6_9ROSA (30S ribosomal protein S13 OS=Morus notabilis GN=L484_020141 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-67
Identity = 131/168 (77.98%), Postives = 151/168 (89.88%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNP-RVPGLQIKCVRVGGVEIPNNKRV 60
           MA TLA+PVAPSLS ICN  +S  LSN +SFP +NP ++ GL +KC RVGGVEIPNNKR+
Sbjct: 1   MAQTLAMPVAPSLSAICNGLSSISLSNRLSFPTTNPLQIGGLSVKCARVGGVEIPNNKRI 60

Query: 61  LYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA 120
            +SLQY+HGIGR +A+KIL DL++ENK+TKD +E+ELI +RDEVSKYMIEGDLRRFNALA
Sbjct: 61  EFSLQYVHGIGRTSARKILNDLSMENKLTKDFSEDELIILRDEVSKYMIEGDLRRFNALA 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           IRRLKEIQCYRG+RHI+GLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 IRRLKEIQCYRGVRHIKGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168

[Close]
BLAST of CmoCh15G007240 vs. TAIR10
Match: AT5G14320.1 (AT5G14320.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-66
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 60
           MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 120
           + YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]
BLAST of CmoCh15G007240 vs. TAIR10
Match: AT1G77750.1 (AT1G77750.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-32
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 20  RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILF 79
           R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 80  DLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 139
            L + NK+ +DL  +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 140 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]
BLAST of CmoCh15G007240 vs. NCBI nr
Match: gi|659131717|ref|XP_008465819.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 2.7e-80
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60
           MA TLA+P+APSLSLICNSR SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDL+EEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]
BLAST of CmoCh15G007240 vs. NCBI nr
Match: gi|449445132|ref|XP_004140327.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 9.4e-78
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 60
           MA T A+P+A SLSLI NSR  NPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]
BLAST of CmoCh15G007240 vs. NCBI nr
Match: gi|645256353|ref|XP_008233913.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Prunus mume])

HSP 1 Score: 266.5 bits (680), Expect = 3.0e-68
Identity = 134/166 (80.72%), Postives = 148/166 (89.16%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNP-RVPGLQIKCVRVGGVEIPNNKRV 60
           MA TLA+P+APSLS+ICN R  NPLSN++SFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSVSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  LYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA 120
            +SLQY+HGIGR  A+ IL DLN+ENKITKDL+EEEL  IRDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]
BLAST of CmoCh15G007240 vs. NCBI nr
Match: gi|596288565|ref|XP_007225958.1| (hypothetical protein PRUPE_ppa012483mg [Prunus persica])

HSP 1 Score: 266.2 bits (679), Expect = 4.0e-68
Identity = 134/166 (80.72%), Postives = 148/166 (89.16%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNP-RVPGLQIKCVRVGGVEIPNNKRV 60
           MA TLA+P+APSLS+ICN R  NPLSN++SFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSLSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  LYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALA 120
            +SLQY+HGIGR  A+ IL DLN+ENKITKDL+EEEL  IRDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]
BLAST of CmoCh15G007240 vs. NCBI nr
Match: gi|567883119|ref|XP_006434118.1| (hypothetical protein CICLE_v10002692mg [Citrus clementina])

HSP 1 Score: 265.0 bits (676), Expect = 8.9e-68
Identity = 133/169 (78.70%), Postives = 151/169 (89.35%), Query Frame = 1 

Query: 1   MAHTLALPVAPSLSLICNSRTSNPLSNA-ISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 60
           M  TLA+PVAP+LS+ICN   +N L+NA +SFP+S  P+ PGL I+C RVGGVEIPNNKR
Sbjct: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60

Query: 61  VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 120
           + YSLQYIHG+GR  A++IL DL +ENKITKD++EEELI+IRDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AIRRLKEIQCYRGIRHIQGLPCRGQ TKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169

The following BLAST results are available for this feature:
BLAST of CmoCh15G007240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR13_ARATH7.0e-6575.7430S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 S... [more]
RR13_SPIOL5.6e-3857.1430S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2[more]
RT13_ARATH5.1e-3147.30Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RP... [more]
RS13_PHYAS8.1e-2952.9430S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1[more]
RS13_ONYPE1.4e-2852.9430S ribosomal protein S13 OS=Onion yellows phytoplasma (strain OY-M) GN=rpsM PE=... [more]
BLAST of CmoCh15G007240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KN28_CUCSA6.6e-7890.42Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381830 PE=3 SV=1[more]
M5XM26_PRUPE2.8e-6880.72Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012483mg PE=3 SV=1[more]
V4SI28_9ROSI6.2e-6878.70Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002692mg PE=3 SV=1[more]
A0A067GQ31_CITSI6.2e-6878.70Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030930mg PE=3 SV=1[more]
W9QNB6_9ROSA1.1e-6777.9830S ribosomal protein S13 OS=Morus notabilis GN=L484_020141 PE=3 SV=1[more]
BLAST of CmoCh15G007240 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14320.13.9e-6675.74 Ribosomal protein S13/S18 family[more]
AT1G77750.12.9e-3247.30 Ribosomal protein S13/S18 family[more]
BLAST of CmoCh15G007240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131717|ref|XP_008465819.1|2.7e-8092.22PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo][more]
gi|449445132|ref|XP_004140327.1|9.4e-7890.42PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus][more]
gi|645256353|ref|XP_008233913.1|3.0e-6880.72PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Prunus mume][more]
gi|596288565|ref|XP_007225958.1|4.0e-6880.72hypothetical protein PRUPE_ppa012483mg [Prunus persica][more]
gi|567883119|ref|XP_006434118.1|8.9e-6878.70hypothetical protein CICLE_v10002692mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001892Ribosomal_S13
IPR010979Ribosomal_S13-like_H2TH
IPR018269Ribosomal_S13_CS
IPR019980Ribosomal_S13_bac-type
IPR02743730s_Rbsml_prot_S13_C
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G007240.1CmoCh15G007240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 45..162
score: 24
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 47..151
score: 2.9
IPR001892Ribosomal protein S13PROFILEPS50159RIBOSOMAL_S13_2coord: 48..154
score: 34
IPR010979Ribosomal protein S13-like, H2THunknownSSF46946S13-like H2TH domaincoord: 46..157
score: 4.32
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 130..143
scor
IPR019980Ribosomal protein S13, bacterial-typeTIGRFAMsTIGR03631TIGR03631coord: 47..156
score: 8.0
IPR02743730s ribosomal protein S13, C-terminalGENE3DG3DSA:4.10.910.10coord: 119..165
score: 3.8
NoneNo IPR availableGENE3DG3DSA:1.10.8.50coord: 45..114
score: 2.2
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 41..167
score: 8.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G007240CmaCh15G007060Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G007240Cla002792Watermelon (97103) v1cmowmB254
CmoCh15G007240Csa5G381830Cucumber (Chinese Long) v2cmocuB280
CmoCh15G007240MELO3C003061Melon (DHL92) v3.5.1cmomeB240
CmoCh15G007240ClCG03G009300Watermelon (Charleston Gray)cmowcgB250
CmoCh15G007240CSPI05G14250Wild cucumber (PI 183967)cmocpiB289
CmoCh15G007240Lsi09G009910Bottle gourd (USVL1VR-Ls)cmolsiB256
CmoCh15G007240Cp4.1LG13g04960Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G007240MELO3C003061.2Melon (DHL92) v3.6.1cmomedB273
CmoCh15G007240CsaV3_5G023320Cucumber (Chinese Long) v3cmocucB0337
CmoCh15G007240Cla97C03G060460Watermelon (97103) v2cmowmbB283
CmoCh15G007240Bhi12G001132Wax gourdcmowgoB0367
CmoCh15G007240CsGy5G014220Cucumber (Gy14) v2cgybcmoB574
CmoCh15G007240Carg01500Silver-seed gourdcarcmoB1118
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G007240Wild cucumber (PI 183967)cmocpiB284
CmoCh15G007240Cucumber (Chinese Long) v2cmocuB276
CmoCh15G007240Melon (DHL92) v3.5.1cmomeB273
CmoCh15G007240Watermelon (Charleston Gray)cmowcgB242
CmoCh15G007240Watermelon (97103) v1cmowmB253
CmoCh15G007240Watermelon (97103) v1cmowmB279
CmoCh15G007240Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G007240Cucurbita pepo (Zucchini)cmocpeB289
CmoCh15G007240Bottle gourd (USVL1VR-Ls)cmolsiB251
CmoCh15G007240Bottle gourd (USVL1VR-Ls)cmolsiB271
CmoCh15G007240Cucumber (Gy14) v2cgybcmoB459
CmoCh15G007240Melon (DHL92) v3.6.1cmomedB307
CmoCh15G007240Silver-seed gourdcarcmoB0714
CmoCh15G007240Silver-seed gourdcarcmoB0915
CmoCh15G007240Cucumber (Chinese Long) v3cmocucB0333
CmoCh15G007240Watermelon (97103) v2cmowmbB280
CmoCh15G007240Wax gourdcmowgoB0404
CmoCh15G007240Cucurbita moschata (Rifu)cmocmoB245
CmoCh15G007240Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G007240Cucurbita maxima (Rimu)cmacmoB465
CmoCh15G007240Cucurbita maxima (Rimu)cmacmoB693