Carg01500 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01500
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein S13, putative
Location	Cucurbita_argyrosperma_scaffold_004 : 1321959 .. 1326376 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAAGTAATTCTAGAAGAGCCCACGGATGTAACTCGTTTTCTTAATGGGCTTTCTCGGGCGAGCGGGTTGGATTTGAAAACCGTGGGCTTCGTTTGGCCTAACAATACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAGTGAGTTCGTTAACGTTGCGTAATTATTTGTTGATTGCGATGCGACAAGAGTAATAGGATCTAGGGCTTGTGAATCTCTGGAGTTTTGTAATTCGATTTGATTTTTGAGTTTAAAACATTTGTGCGTTGGAAGATTTTGAATGTTTGTTGATGATATGTGTAGATCGAGTCGATTCACATAAAAGCGGGTGTGGAGATTCCCGATAACAAGCCGCTTAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCTAAGTACATGGTCGGACATGAGTTGGTAAATTAGCGGCTCTCTCCACCATATTTCTTCCCATGAATTTCAAATATGTTTGCAGGGACTAACAGGATGTTTATTTTTTGTGTCTGTGTTGCAGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCGTTGAAAATGGTTCTGCAATTCCTTCTCTTTTTTGCATTTGTAAAGCTTCATATGCACTTGATACATCACATTTAGCATAAGACTTCAATAGCTGTTGAAATTATGAACTGGTTATTAACAAATGGTTCTGGAATTCCTCCTCTTTAGAAACGTTTAAATGCCTCAATTTGCATTTCTACTGGTTTAATTGCTTAAACTGTTCGTAATTTGTTCACTTCTCTTAATCTGTTTGTTTTCATTGCATCAAGCTCATAGTTGGATTCAAAAGAGGAATTACGAACTGTTCGTGTTAATTTTCACCATTTCAGAAGGCCCATATACCCAATATTAGATACAATATAATATACATACTATATGAGAAGAAAAGAAAAAAAAAACAATAACACATTTATTTAGCTATACATTATTTTCATTGCATCAAGCTCATAGTTGGATTCAAAAGAGGAACTGATATCAACTTTAGCACCGCAATAAGCGTAGATGATAGGTTGTTAGATGTCACAATCGCACTTTCCTTGGCAATGGATTTTTGCGATTGTGCGACACTCAATCTCAACACCGAGTGAGTCAAGCCAACCTAGATTTGTGTCATCTATAGTCATACAATGTATGCTCAAGCCTTTGACTCCGTTTTGAGAAGAATGTTTTGGAAAAATAGGGGTAGAGAGATTTTTGAAGAAGAGTTTGAAAGCAAGATTGAAAGAAGGTGTGCTTGCAAAGAAAGAAACACAACTTAAATATTATATAACTCGGGTAAGAAGAATTGGTAGGAAGACTTGACAACTAGTCGCATCTCCCTACCGTAGACTCTCTACTGTACATTTTGAAATGATTTAGGACTGACAAACCTAGACGTAACATAATTTCGCCGAATGATTATACAATATCTAGGTGGGAGGAGTTAACAACGGGTCGTATCCCCTATAGTACATTTTTGGACGATCGCTACATAGTCAAAATACAATATGAAATTAAATAAAGGATATAGCGTTGGCATGATATGGACATGCAACCATGGGCAACATGCCCTAGACGAAGATGATCATGATCATGATACTTGGCACATTAGTTTAAATGATAAAAATATTAATATTTTAAATATGATTTATAATTCAATAAGAAGTTTCGAAGAAAAAGTAATAATTAAACTTGGGCCTGGATTTGGGCCAAGCCCATTCTAAAACGAATAAGTTTGGGCTGGCCTTTATCCACATTTTTGTAAGCGGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAATAAGGTGGGCATTGAAACCAGAGAGCCGCTCGGAGTTCAATCGGATTGAAGAAATCCACTAATGTGCTGATTGCCGTTTGGTGAGTGAGAATTTTGAAGAGAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTAAATCTTCTCTTCTTTGGACTTCAACTATGGAGTTCCTTTCTTCAATTTTACCTTCTTCCTCCGTTCAATTACTTACTTCGGCTCTACAGTTTCCGCTTCGTGCTTTAATTTCATGTATTTTTTTCGATGTGGAGGGATTTTGCCAATTATATTTATCCTGCGGAACTTGGCTATTGTCTTCTTGATTTCATATTGTATCTGTTTCTTGATTTCTTCATTCCCTTTGCTTGTGAGTATTGCTGCTTGATTCTGTGAAACTATTATTACAGAACCTACTCTCAACTCAGCTTCTTCTTTTTTTTCTTTCGTTTGAATTTCCTTTTTGTGATGCTCTACACTCAGTTTTTCCGTAGTTTTTCCTCGGTTACAGTACTAGACTCTGCCTCTACACTTTCATTGAACAGTGTGATGAAACAAAAATTCCTGCGTTTCGTTTCCCTAATTGCTAGTGTCTAAATGAATCAAATTCAGGATCCTAATTCCCATTTTCCCTCACCCTTTCTGTGCATGATGGATTATAAAGATTAAGCAGATATAATTGGACAGAAAGAGTAGATTATGCCAACGAATGGCTGACCTTAAATGGAAATTTGACTTGCTAGTCTATGCTGGACAGGATAAAGTTTGTAACCCATTAGCTTAAGATTTTGAGTTGATTTAACTTGGTATCGGAGTAGGAGGTCCGGTGTTTAACTCCTACGAAGTTTCAAACTCACATGATATCCCTGTTTCTTCTTGAATGATTCCCTCATTTTTTGTTCCTTCAATTTTGAACCATTCAGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCTCTTTCTCTATCTCTGTGTGTGTGTGTGTGTGTGTGTGTTAGAATTACAAACGTTGGTTGCCTCTGTTACTTTTGTGAAGTGCTTAAAAATGTAATTGTTGGGTTTTGCAGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGCCTTTGCCATTGAATCTCTTGTAAAAGCTTAGAGACGTATTGTTTAAACTCTGGATTTGCATCTGATTTCCTCATGAAAATACTTTTGTGTTATTGATGTGTCATGTTCTATCTTACAGATGCGCTCACCCTCTTCAAATGCTAGAGTAGTTAACGAGGGGTCCATTATTATAACTCATTTTACTAACACAATCTTTTCTATTGGATCTCTGGGGACGGTGAACTAGTCTAAACCATCAACAAGATTGCTAATAAAATGATATGCTCTGTGGAGTTATTGTTCGTCAGCGCCAGGCCTTGGACGTGGCATCAATTTGAATAAAGAGGCTTTGGGGAGAAATAACCGATTTCAATCGCGAAAAAGTAAGTGGGTTTTAATTTAAAATTTATTGAATCCAAAAATCTAAAAGGATGATTAGGTATCCATGATTAGATTACTATACTATGTTCTTATTGATGATATGTTCATGCATGATATGTTTATTTTGTTATATGGGAATGATTAAGAGTTAGTTGGTGAACTTGATTCGATCGTTGGGTATTTTTAACATTTTTAGAAGTAACTATGATGACTTGTATATTGTGGAGATGATTATAACTTCTTTAACTAATTTCTTATTAGAGAACGATCCCAATTCTACAATAATACATGAATTTGTAGAACTAGAGTTAGAGCTCTTAAATGCATGAATTTTATTTTAGGACCCTACAACAACTCATGTAGAAGAACACGGAACATGAGAACTCGA

mRNA sequence

ATGGATCAAGTAATTCTAGAAGAGCCCACGGATGTAACTCGTTTTCTTAATGGGCTTTCTCGGGCGAGCGGGTTGGATTTGAAAACCGTGGGCTTCGTTTGGCCTAACAATACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAATCGAGTCGATTCACATAAAAGCGGGTGTGGAGATTCCCGATAACAAGCCGCTTAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCTAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGCCTTTGCCATTGAATCTCTTGTAAAAGCTTAGAGACGTATTGTTTAAACTCTGGATTTGCATCTGATTTCCTCATGAAAATACTTTTGTGTTATTGATGTGTCATGTTCTATCTTACAGATGCGCTCACCCTCTTCAAATGCTAGAGTAGTTAACGAGGGGTCCATTATTATAACTCATTTTACTAACACAATCTTTTCTATTGGATCTCTGGGGACGGTGAACTAGTCTAAACCATCAACAAGATTGCTAATAAAATGATATGCTCTGTGGAGTTATTGTTCGTCAGCGCCAGGCCTTGGACGTGGCATCAATTTGAATAAAGAGGCTTTGGGGAGAAATAACCGATTTCAATCGCGAAAAAGTAAGTGGGTTTTAATTTAAAATTTATTGAATCCAAAAATCTAAAAGGATGATTAGGTATCCATGATTAGATTACTATACTATGTTCTTATTGATGATATGTTCATGCATGATATGTTTATTTTGTTATATGGGAATGATTAAGAGTTAGTTGGTGAACTTGATTCGATCGTTGGGTATTTTTAACATTTTTAGAAGTAACTATGATGACTTGTATATTGTGGAGATGATTATAACTTCTTTAACTAATTTCTTATTAGAGAACGATCCCAATTCTACAATAATACATGAATTTGTAGAACTAGAGTTAGAGCTCTTAAATGCATGAATTTTATTTTAGGACCCTACAACAACTCATGTAGAAGAACACGGAACATGAGAACTCGA

Coding sequence (CDS)

ATGGATCAAGTAATTCTAGAAGAGCCCACGGATGTAACTCGTTTTCTTAATGGGCTTTCTCGGGCGAGCGGGTTGGATTTGAAAACCGTGGGCTTCGTTTGGCCTAACAATACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAATCGAGTCGATTCACATAAAAGCGGGTGTGGAGATTCCCGATAACAAGCCGCTTAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCTAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCAGGAGATAATGGCGCACACTTTAGCATTGCCCGTCGCTCCTTCGCTCTCCCTTATCTGCAATTCTCGAACCTCCAATCCTCTCTCTAACGCCATCTCCTTCCCCATTTCAAACCCTCGGGTTCCTGGTCTTCAAATCAAGTGTGTCCGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCTATACTCCCTTCAGTATATACATGGAATTGGGCGCAACAATGCTAAGAAAATACTGTTTGATCTAAACGTGGAGAATAAGATCACCAAGGACTTAGCTGAGGAGGAACTCATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATCCAGGGGTTGCCATGCCGGGGGCAGCGAACGAAAAACAACTGCAGGACGTTGAAGGGTAAGAAGGTCGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MDQVILEEPTDVTRFLNGLSRASGLDLKTVGFVWPNNTSALSFLRRLNSLFRFTGTLLRRIMFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

Homology

[Close]

BLAST of Carg01500 vs. NCBI nr
Match: XP_023550656.1 (30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 614.0 bits (1582), Expect = 3.4e-172
Identity = 314/319 (98.43%), Postives = 317/319 (99.37%), Query Frame = 0


Query: 62  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVL 121
           MFGVRRSLG+VSNDLLHRFRSLSIESIHIKAG+EIPDNKPLKYALQYINGIGRSRAPQVL
Sbjct: 1   MFGVRRSLGIVSNDLLHRFRSLSIESIHIKAGMEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 122 AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 181
           AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 182 PCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNA 241
           PCRGQRTKTNARTMKSKQIGSGKKKAS  +EIMAHTLALPVAPSLSLICNSRTSNPLSNA
Sbjct: 121 PCRGQRTKTNARTMKSKQIGSGKKKASRREEIMAHTLALPVAPSLSLICNSRTSNPLSNA 180

Query: 242 ISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKIT 301
           ISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKIT
Sbjct: 181 ISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKIT 240

Query: 302 KDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN 361
           KDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
Sbjct: 241 KDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN 300

Query: 362 CRTLKGKKVAIAGKKKAPR 379
           CRTLKGKKVAIAGKKKAPR
Sbjct: 301 CRTLKGKKVAIAGKKKAPR 319

[Close]

BLAST of Carg01500 vs. NCBI nr
Match: XP_022939154.1 (30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 612.1 bits (1577), Expect = 1.3e-171
Identity = 314/319 (98.43%), Postives = 316/319 (99.06%), Query Frame = 0


Query: 62  MFGVRRSLGVVSNDLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSRAPQVL 121
           MFGVRRSLGVVSNDLLHRFRSLSI SIHIKAG+EIPDNKPLKYALQYINGIGRSRAPQVL
Sbjct: 1   MFGVRRSLGVVSNDLLHRFRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVL 60

Query: 122 AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 181
           AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL
Sbjct: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120

Query: 182 PCRGQRTKTNARTMKSKQIGSGKKKAS--QEIMAHTLALPVAPSLSLICNSRTSNPLSNA 241
           PCRGQRTKTNARTMKSKQIGSGKKKAS  +EIMAHTLALPVAPSLSLICNSRTSNPLSNA
Sbjct: 121 PCRGQRTKTNARTMKSKQIGSGKKKASRREEIMAHTLALPVAPSLSLICNSRTSNPLSNA 180

Query: 242 ISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKIT 301
           ISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKIT
Sbjct: 181 ISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKIT 240

Query: 302 KDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN 361
           KDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN
Sbjct: 241 KDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNN 300

Query: 362 CRTLKGKKVAIAGKKKAPR 379
           CRTLKGKKVAIAGKKKAPR
Sbjct: 301 CRTLKGKKVAIAGKKKAPR 319

[Close]

BLAST of Carg01500 vs. NCBI nr
Match: XP_012078160.2 (uncharacterized protein LOC105638882 [Jatropha curcas])

HSP 1 Score: 383.3 bits (983), Expect = 9.8e-103
Identity = 213/341 (62.46%), Postives = 256/341 (75.07%), Query Frame = 0


Query: 58  LRRIMFGVRRSLGVVSN---DLLHR--FRSLSIESIHIKAGVEIPDNKPLKYALQYINGI 117
           LRR+  G R S+G++SN    LL    FR   ++ + I    EIP+ K L+YALQ+I GI
Sbjct: 3   LRRL--GSRGSVGILSNIGQSLLQNLSFRCQRVQCLRI-GNAEIPNEKRLRYALQHIQGI 62

Query: 118 GRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCH 177
           GR RA ++L +L LENK AKDLT  E+  L +E+SKY++G +L + VK DI+RL  IQCH
Sbjct: 63  GRQRAHKILVDLSLENKPAKDLTGFELHSLREEVSKYLIGDDLRRHVKADIERLVGIQCH 122

Query: 178 RGIRHGEGLPCRGQRTKTNARTMKSKQIGS--GKKKASQEI------------MAHTLAL 237
           RG  H   +PCRGQRTKTNART K ++ G+  G+   ++ I            MA  LA+
Sbjct: 123 RGFNHVCMMPCRGQRTKTNARTRKGQRRGNLDGRLSLAESIQRRQERGGQIEKMAQALAM 182

Query: 238 PVAPSLSLICNSRTSNPLSNAISFPI-SNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYI 297
           PVAPSLS+ICN+R SN L   +S PI S P+V GL I+C RVGGVEIPNNKRV YSLQYI
Sbjct: 183 PVAPSLSVICNNRRSNSLFAFVSLPIASPPKVHGLSIQCARVGGVEIPNNKRVEYSLQYI 242

Query: 298 HGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEI 357
           HGIGR+ A++IL DL+ ENKITKDL+EEELI++RDEVSKYMIEGDLRRFNAL IRRLKEI
Sbjct: 243 HGIGRSRARQILADLSFENKITKDLSEEELITLRDEVSKYMIEGDLRRFNALNIRRLKEI 302

Query: 358 QCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           QCYRGIRHIQGLPCRGQRTKNNCRTLKGK+V +AGKKKAPR
Sbjct: 303 QCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVTVAGKKKAPR 340

[Close]

BLAST of Carg01500 vs. NCBI nr
Match: XP_011027702.1 (PREDICTED: uncharacterized protein LOC105127921 [Populus euphratica])

HSP 1 Score: 349.4 bits (895), Expect = 1.6e-92
Identity = 207/402 (51.49%), Postives = 245/402 (60.95%), Query Frame = 0


Query: 62  MFGVR---RSLGVVSNDLLHR--FRSLSIESIHIKAGVEIPDNKPLKYALQYINGIGRSR 121
           M G+R   R L  V+  LL    FR   ++ + +    EIP++K L+ ALQYI+GIGR R
Sbjct: 1   MLGLRGSVRLLTEVNQSLLQNATFRCQRVQGLRV-GNTEIPNDKKLEVALQYIHGIGRKR 60

Query: 122 APQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIR 181
           A Q+L EL L NK  KDLT  E+  L +E+SKY+ G +L + VK D+ RL  I+C+RG R
Sbjct: 61  AHQILCELSLVNKPTKDLTGIELNSLREEVSKYLTGPDLARRVKADVQRLVDIECYRGYR 120

Query: 182 HGEGLPCRGQRTKTNARTMKSKQ------------------------------------- 241
           H EGLPCRGQRT TNART K  Q                                     
Sbjct: 121 HVEGLPCRGQRTSTNARTRKEHQKYGSQEVAERIRKHQERNQAKWFHLNNLIDDGHYTEL 180

Query: 242 ------------------------------------------IGSGKKKASQEIMAHTLA 301
                                                       + K   +++ MA TLA
Sbjct: 181 LMVIILAILAKPMQKLSSTLRCGPRNMLSKLALDDASKSNNDCSTSKAALTEKKMAQTLA 240

Query: 302 LPVAPSLSLICNSRTSNPLSNAISFPISNPRVPG-LQIKCVRVGGVEIPNNKRVLYSLQY 361
           +PV PSLS ICN   S  LSN+IS PISNP   G L I+C RVGGVEIPNNKRV YSLQY
Sbjct: 241 MPVVPSLSAICNGLKSTCLSNSISLPISNPPKAGSLSIRCARVGGVEIPNNKRVEYSLQY 300

Query: 362 IHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKE 379
           IHGIGR+ A++IL DL +ENKITKDL+E+ELI++RDEVSKYMIEGDLRRFNAL IRRLKE
Sbjct: 301 IHGIGRSIARQILSDLTMENKITKDLSEDELITLRDEVSKYMIEGDLRRFNALNIRRLKE 360

[Close]

BLAST of Carg01500 vs. NCBI nr
Match: GAV76224.1 (Ribosomal_S13 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 334.0 bits (855), Expect = 6.8e-88
Identity = 177/321 (55.14%), Postives = 220/321 (68.54%), Query Frame = 0


Query: 62  MFGVRRSLGVVSNDLLHRFRSLSIESIHIK----AGVEIPDNKPLKYALQYINGIGRSRA 121
           M GVR S+G +S+  L    + S   + ++       EIPDNK L+ ALQ+I+GIGR++A
Sbjct: 1   MLGVRCSVGKLSDIGLRLLENTSFHGLRVRCLRVGNTEIPDNKKLEVALQHIHGIGRNKA 60

Query: 122 PQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRH 181
            ++L +L++ENKL ++L+ RE+  L DE+S+Y++G +L +C++ DI RL  IQC+RGIRH
Sbjct: 61  HRILCDLNIENKLTRELSGRELNSLRDELSRYLIGEDLRRCIRNDIARLVGIQCYRGIRH 120

Query: 182 GEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLS 241
            +GLPCRGQRT TNART K K+                                      
Sbjct: 121 ADGLPCRGQRTSTNARTAKGKK-------------------------------------- 180

Query: 242 NAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENK 301
                      V  L I+C RVGGVEIPNNKRV YSLQYIHGIGR  +++IL DLN+ENK
Sbjct: 181 ----------GVGILNIRCARVGGVEIPNNKRVEYSLQYIHGIGRTRSRQILNDLNMENK 240

Query: 302 ITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 361
           ITKDL+EEEL+ IRDEVSKYMIEG+L+RFN L I RLKEIQCYRGIRHI+GLPCRGQRTK
Sbjct: 241 ITKDLSEEELVIIRDEVSKYMIEGELKRFNQLNINRLKEIQCYRGIRHIKGLPCRGQRTK 273

Query: 362 NNCRTLKGKKVAIAGKKKAPR 379
           NNCRTLKGK+VAIAGKKKAPR
Sbjct: 301 NNCRTLKGKRVAIAGKKKAPR 273

[Close]

BLAST of Carg01500 vs. TAIR10
Match: AT5G14320.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 248.8 bits (634), Expect = 5.2e-66
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 212 MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 271
           MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 272 VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 331
           + YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 332 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Carg01500 vs. TAIR10
Match: AT1G77750.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 135.6 bits (340), Expect = 6.5e-32
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 231 RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILF 290
           R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 291 DLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 350
            L + NK+ +DL  +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 351 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Carg01500 vs. TAIR10
Match: AT1G22780.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-06
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 96  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS------- 155
           +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 156 --------------KY--MVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTN 207
                         KY  +V + L+  ++ D++RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

[Close]

BLAST of Carg01500 vs. TAIR10
Match: AT1G34030.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-06
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 96  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS------- 155
           +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 156 --------------KY--MVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTN 207
                         KY  +V + L+  ++ D++RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

[Close]

BLAST of Carg01500 vs. TAIR10
Match: AT4G09800.1 (S18 ribosomal protein)

HSP 1 Score: 50.4 bits (119), Expect = 2.7e-06
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 0


Query: 96  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS------- 155
           +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 156 --------------KY--MVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTN 207
                         KY  +V + L+  ++ D++RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

[Close]

BLAST of Carg01500 vs. Swiss-Prot
Match: sp|P42732|RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 9.4e-65
Identity = 128/169 (75.74%), Postives = 143/169 (84.62%), Query Frame = 0


Query: 212 MAHTLALPVAPSLSLICNSRTSNPLS-NAISFPISN-PRVPGLQIKCVRVGGVEIPNNKR 271
           MA  +A+PVA SLSLICN   SNPLS N ++ P SN P    L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 272 VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 331
           + YSLQYIHGIGR  A++IL DL +ENKITKD+AEEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 332 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Carg01500 vs. Swiss-Prot
Match: sp|P82163|RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 243.8 bits (621), Expect = 3.0e-63
Identity = 125/169 (73.96%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 212 MAHTLALPVAPSLSLICNSRTSNPL-SNAISF-PISNPRVPGLQIKCVRVGGVEIPNNKR 271
           MAHTLA PVAPS+SLICN++ S  L S++++F P++     GL IKCVRVG VEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 272 VLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNAL 331
           V YSLQYIHGIGR+ A++IL DL +ENK+TK+L+E+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 332 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKVAIAGKKKAP 378
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK+V IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 169

[Close]

BLAST of Carg01500 vs. Swiss-Prot
Match: sp|Q8LPW2|RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.5e-33
Identity = 75/148 (50.68%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 62  MFGVRRSLGVVSNDLLHRF--RSLSIESIHIKAGV--EIPDNKPLKYALQYINGIGRSRA 121
           MFG  R L  V+  L        + +++I+I  GV  EIPDNK L YALQ ++GIGRS+A
Sbjct: 1   MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKA 60

Query: 122 PQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRH 181
             ++AEL +ENK  KDL+KRE+  + + +SKY++G++L KCV++D+ RL  IQC+RGIRH
Sbjct: 61  QHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRH 120

Query: 182 GEGLPCRGQRTKTNARTMKSKQIGSGKK 206
            + LPCRGQRT TNART +S++  SG +
Sbjct: 121 VDSLPCRGQRTHTNARTRRSRKTFSGSR 148

[Close]

BLAST of Carg01500 vs. Swiss-Prot
Match: sp|Q9CA19|RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-30
Identity = 70/148 (47.30%), Postives = 96/148 (64.86%), Query Frame = 0


Query: 231 RTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILF 290
           R++  L +     + N    GL+++ +RVG  E+PNNK +   LQ ++GIGR  + ++L 
Sbjct: 6   RSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLC 65

Query: 291 DLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLP 350
            L + NK+ +DL  +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLP
Sbjct: 66  HLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLP 125

Query: 351 CRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           CRGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 126 CRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Carg01500 vs. Swiss-Prot
Match: sp|B1VAC3|RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-28
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 0


Query: 258 RVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLAEEELISIRDEVSK 317
           R+ G++IP++KRV+ +L YI+G+G+  ++KIL +LN+ + I  K+L E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 318 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 376
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

[Close]

BLAST of Carg01500 vs. TrEMBL
Match: tr|A0A1Q3C7S2|A0A1Q3C7S2_CEPFO (Ribosomal_S13 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19699 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.5e-88
Identity = 177/321 (55.14%), Postives = 220/321 (68.54%), Query Frame = 0


Query: 62  MFGVRRSLGVVSNDLLHRFRSLSIESIHIK----AGVEIPDNKPLKYALQYINGIGRSRA 121
           M GVR S+G +S+  L    + S   + ++       EIPDNK L+ ALQ+I+GIGR++A
Sbjct: 1   MLGVRCSVGKLSDIGLRLLENTSFHGLRVRCLRVGNTEIPDNKKLEVALQHIHGIGRNKA 60

Query: 122 PQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRH 181
            ++L +L++ENKL ++L+ RE+  L DE+S+Y++G +L +C++ DI RL  IQC+RGIRH
Sbjct: 61  HRILCDLNIENKLTRELSGRELNSLRDELSRYLIGEDLRRCIRNDIARLVGIQCYRGIRH 120

Query: 182 GEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRTSNPLS 241
            +GLPCRGQRT TNART K K+                                      
Sbjct: 121 ADGLPCRGQRTSTNARTAKGKK-------------------------------------- 180

Query: 242 NAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDLNVENK 301
                      V  L I+C RVGGVEIPNNKRV YSLQYIHGIGR  +++IL DLN+ENK
Sbjct: 181 ----------GVGILNIRCARVGGVEIPNNKRVEYSLQYIHGIGRTRSRQILNDLNMENK 240

Query: 302 ITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTK 361
           ITKDL+EEEL+ IRDEVSKYMIEG+L+RFN L I RLKEIQCYRGIRHI+GLPCRGQRTK
Sbjct: 241 ITKDLSEEELVIIRDEVSKYMIEGELKRFNQLNINRLKEIQCYRGIRHIKGLPCRGQRTK 273

Query: 362 NNCRTLKGKKVAIAGKKKAPR 379
           NNCRTLKGK+VAIAGKKKAPR
Sbjct: 301 NNCRTLKGKRVAIAGKKKAPR 273

[Close]

BLAST of Carg01500 vs. TrEMBL
Match: tr|B9RJA5|B9RJA5_RICCO (30S ribosomal protein S13, putative OS=Ricinus communis OX=3988 GN=RCOM_1032660 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 1.1e-86
Identity = 176/326 (53.99%), Postives = 220/326 (67.48%), Query Frame = 0


Query: 62  MFGVRRSLGVVSN---------DLLHRFRSLSIESIHIKAGVEIPDNKPLKYALQYINGI 121
           MFG R S+G++++           + +FR   ++ + +    EIPD+K L++ALQ+I GI
Sbjct: 1   MFGSRGSIGLLTDIGHCVLKNLSTILQFRYQRVQCLRV-GNAEIPDDKQLRFALQHIRGI 60

Query: 122 GRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCH 181
           GR RA Q+L +L LENK  KDLT  E+  L +E+SKY++G EL +CV+ DI RL  IQC+
Sbjct: 61  GRQRAHQILIDLSLENKRTKDLTGLELHTLRNEVSKYLIGEELTRCVRSDIQRLADIQCY 120

Query: 182 RGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKASQEIMAHTLALPVAPSLSLICNSRT 241
           RG  H   LPCRGQ T+TNART K  +          + +A                   
Sbjct: 121 RGYNHACLLPCRGQLTRTNARTRKGMRTLERSNWDGHQSLA------------------- 180

Query: 242 SNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVLYSLQYIHGIGRNNAKKILFDL 301
                           V GL I+C RVGGVEIPNNKR+ YSLQYIHG+GR+ A++IL DL
Sbjct: 181 ----------------VHGLSIRCARVGGVEIPNNKRIEYSLQYIHGVGRSRARQILSDL 240

Query: 302 NVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCR 361
           ++ENKITK+L+EEELI++RDEVSKYMIEGDLRRFNAL IRRLKEIQCYRG+RHIQGLPCR
Sbjct: 241 SMENKITKELSEEELITLRDEVSKYMIEGDLRRFNALNIRRLKEIQCYRGVRHIQGLPCR 290

Query: 362 GQRTKNNCRTLKGKKVAIAGKKKAPR 379
           GQRTKNNCRTLKGK+V +AGKKK PR
Sbjct: 301 GQRTKNNCRTLKGKRVTVAGKKKTPR 290

[Close]

BLAST of Carg01500 vs. TrEMBL
Match: tr|A0A1S3CPR4|A0A1S3CPR4_CUCME (30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.5e-80
Identity = 154/167 (92.22%), Postives = 161/167 (96.41%), Query Frame = 0


Query: 212 MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 271
           MA TLA+P+APSLSLICNSR SNPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 272 YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 331
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDL+EEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 332 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Carg01500 vs. TrEMBL
Match: tr|A0A0A0KN28|A0A0A0KN28_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.6e-77
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 212 MAHTLALPVAPSLSLICNSRTSNPLSNAISFPISNPRVPGLQIKCVRVGGVEIPNNKRVL 271
           MA T A+P+A SLSLI NSR  NPLSN +SFPISNP+V GLQIKCVRVGGVEIPNNKRV 
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 272 YSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNALAI 331
           YSLQY+HGIGRNNAKKILFDLNVENKITKDL+EEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 332 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Carg01500 vs. TrEMBL
Match: tr|A0A2P5D3F4|A0A2P5D3F4_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_263800 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.7e-71
Identity = 139/170 (81.76%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 210 EIMAHTLALPVAPSLSLICNSRTSNPLSNAISFPI-SNPRVPGLQIKCVRVGGVEIPNNK 269
           E MA TLA+PVAPSLS+ICN RTSNPLSN +SFPI S P++ GL +KC RVGGVEIPNNK
Sbjct: 32  EKMAQTLAMPVAPSLSVICNGRTSNPLSNRLSFPIASPPKIGGLSVKCARVGGVEIPNNK 91

Query: 270 RVLYSLQYIHGIGRNNAKKILFDLNVENKITKDLAEEELISIRDEVSKYMIEGDLRRFNA 329
           R+ +SLQYIHGIGR  A+KIL DL++ENK+TKD +EEEL++IRDEVSKYMIEGDLRRFNA
Sbjct: 92  RIEFSLQYIHGIGRTRARKILNDLSIENKLTKDFSEEELVTIRDEVSKYMIEGDLRRFNA 151

Query: 330 LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 379
           LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGK+VAIAGKKKA R
Sbjct: 152 LAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKRVAIAGKKKASR 201

The following BLAST results are available for this feature:

BLAST of Carg01500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550656.1	3.4e-172	98.43	30S ribosomal protein S13, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022939154.1	1.3e-171	98.43	30S ribosomal protein S13, chloroplastic-like [Cucurbita moschata]	[more]
XP_012078160.2	9.8e-103	62.46	uncharacterized protein LOC105638882 [Jatropha curcas]	[more]
XP_011027702.1	1.6e-92	51.49	PREDICTED: uncharacterized protein LOC105127921 [Populus euphratica]	[more]
GAV76224.1	6.8e-88	55.14	Ribosomal_S13 domain-containing protein [Cephalotus follicularis]	[more]

BLAST of Carg01500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14320.1	5.2e-66	75.74	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	6.5e-32	47.30	Ribosomal protein S13/S18 family	[more]
AT1G22780.1	2.7e-06	31.11	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	2.7e-06	31.11	Ribosomal protein S13/S18 family	[more]
AT4G09800.1	2.7e-06	31.11	S18 ribosomal protein	[more]

BLAST of Carg01500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P42732\|RR13_ARATH	9.4e-65	75.74	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
sp\|P82163\|RR13_SPIOL	3.0e-63	73.96	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
sp\|Q8LPW2\|RT13_SOYBN	1.5e-33	50.68	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP...	[more]
sp\|Q9CA19\|RT13_ARATH	1.2e-30	47.30	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
sp\|B1VAC3\|RS13_PHYAS	1.9e-28	52.94	30S ribosomal protein S13 OS=Phytoplasma australiense OX=59748 GN=rpsM PE=3 SV=1	[more]

BLAST of Carg01500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1Q3C7S2\|A0A1Q3C7S2_CEPFO	4.5e-88	55.14	Ribosomal_S13 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CF...	[more]
tr\|B9RJA5\|B9RJA5_RICCO	1.1e-86	53.99	30S ribosomal protein S13, putative OS=Ricinus communis OX=3988 GN=RCOM_1032660 ...	[more]
tr\|A0A1S3CPR4\|A0A1S3CPR4_CUCME	4.5e-80	92.22	30S ribosomal protein S13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503408...	[more]
tr\|A0A0A0KN28\|A0A0A0KN28_CUCSA	1.6e-77	90.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381830 PE=3 SV=1	[more]
tr\|A0A2P5D3F4\|A0A2P5D3F4_9ROSA	1.7e-71	81.76	Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_263800 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR010979	Ribosomal_S13-like_H2TH
IPR018269	Ribosomal_S13_CS
IPR019980	Ribosomal_S13_bac-type
IPR027437	30s_Rbsml_prot_S13_C
IPR001892	Ribosomal_S13

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01500-RA	Carg01500-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 93..194 e-value: 1.3E-25 score: 90.1 coord: 258..362 e-value: 1.5E-30 score: 106.1
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 88..204 score: 21.324
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 259..365 score: 34.482
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 256..372 score: 24.017
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 92..197 score: 30.659
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	G3DSA:4.10.910.10		coord: 159..210 e-value: 1.6E-19 score: 71.1 coord: 328..378 e-value: 1.8E-23 score: 83.8
IPR019980	Ribosomal protein S13, bacterial-type	TIGRFAM	TIGR03631	TIGR03631	coord: 258..367 e-value: 5.7E-39 score: 131.1
None	No IPR available	GENE3D	G3DSA:1.10.8.50		coord: 89..156 e-value: 1.4E-16 score: 62.2 coord: 256..325 e-value: 1.5E-24 score: 87.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 187..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..203
None	No IPR available	PANTHER	PTHR10871:SF11	SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL	coord: 243..374 coord: 75..200
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 243..374 coord: 75..200
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 173..186
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 341..354
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	SSF46946	S13-like H2TH domain	coord: 92..197
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	SSF46946	S13-like H2TH domain	coord: 257..368

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01500	Cla002792	Watermelon (97103) v1	carwmB0828
Carg01500	Csa5G381830	Cucumber (Chinese Long) v2	carcuB0845
Carg01500	ClCG03G009300	Watermelon (Charleston Gray)	carwcgB0802
Carg01500	CSPI05G14250	Wild cucumber (PI 183967)	carcpiB0865
Carg01500	CmaCh15G007060	Cucurbita maxima (Rimu)	carcmaB1148
Carg01500	CmoCh15G007240	Cucurbita moschata (Rifu)	carcmoB1118
Carg01500	Lsi09G009910	Bottle gourd (USVL1VR-Ls)	carlsiB754
Carg01500	Cp4.1LG13g04960	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01500	CsGy5G014220	Cucumber (Gy14) v2	carcgybB0819
Carg01500	CsaV3_5G023320	Cucumber (Chinese Long) v3	carcucB0869
Carg01500	Cla97C03G060460	Watermelon (97103) v2	carwmbB0861
Carg01500	Bhi12G001132	Wax gourd	carwgoB0962

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01500	Silver-seed gourd	carcarB500
Carg01500	Silver-seed gourd	carcarB568
Carg01500	Cucumber (Gy14) v2	carcgybB0815
Carg01500	Cucurbita maxima (Rimu)	carcmaB1149
Carg01500	Cucurbita maxima (Rimu)	carcmaB1150
Carg01500	Cucurbita moschata (Rifu)	carcmoB1119
Carg01500	Cucurbita moschata (Rifu)	carcmoB1121
Carg01500	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01500	Cucurbita pepo (Zucchini)	carcpeB1160
Carg01500	Wild cucumber (PI 183967)	carcpiB0861
Carg01500	Cucumber (Chinese Long) v2	carcuB0841
Carg01500	Cucumber (Chinese Long) v3	carcucB0865
Carg01500	Bottle gourd (USVL1VR-Ls)	carlsiB755
Carg01500	Bottle gourd (USVL1VR-Ls)	carlsiB757
Carg01500	Melon (DHL92) v3.5.1	carmeB0826
Carg01500	Melon (DHL92) v3.5.1	carmeB0822
Carg01500	Melon (DHL92) v3.6.1	carmedB0838
Carg01500	Melon (DHL92) v3.6.1	carmedB0833
Carg01500	Watermelon (Charleston Gray)	carwcgB0799
Carg01500	Watermelon (97103) v1	carwmB0829
Carg01500	Watermelon (97103) v1	carwmB0833
Carg01500	Watermelon (97103) v2	carwmbB0860
Carg01500	Wax gourd	carwgoB0969