Lsi09G009910 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G009910
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	30S ribosomal protein S13
Location	chr09 : 13504924 .. 13506933 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAGAGCTGGCCTTTATCCATATCCTTCGAGCGGGATGAAGAAGATAAGGTAGCCATTGAAACCGAAACCAGAGAGCCGCTTGGAGTTGTGAATCGAATTGAAAGCCACTTCCTATTCCTAATTTCCTAATGTGCTGATCGCTGTTTGTTGAGTGAGAACTTGGAACACGGGAGATAATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTCTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTAAATTTTCTCTTCTTCCTACCCCAACTTTGGACTTCCTTTCTCCAATTTTACTCTCTTCCTTCGTTCAATTGCTTGGGTTCTACAATTTCTATTTCCTTCATTTCTTTGTCCTTTAATTTCATGCATTTTTTAGGATATTCTGCAAGTTTCTTTTTGTCTTTACTTAATTCGTGTTCCATTGTCTTCTTGATTTCTGCTTCCCCTTTGCGTGTATGCTAGTATTGCAACTTGATTCTTTGACACTATTATTACATAACATACCCTAAACAGTTTATTCCTTGATTCTTCCTCGGTTACAGTACTACACTTTATCTCTATTTGGAAGTAATTTATCTCTATCTTGATTGAACAGTGTGATGAAACCAAGGTTCTGCATTTCGTTTCCCTAACTGCTATTGTCTGGAGGAACCAAATTCAGATCCTAAATCCAACCCCCCTCCCCCCCCCCAAAAAAAAAAAAAATAAATAAATAAAAATATAAATTATAATTATAAAATCCTTAAGAGTCTCAGTTTCTCTCGCACTGTCTGTGCATGATTGATCATAAAGATTAAGCAGATATAATTGGACTGAAAGAGGAGATTCTGCTGATTAATGGCTGACCTTAAATGGCAATTTGTCATGCTAGTCTGTGCTTCACATTATCAATGTTGAATTATTGATATAATTAAATTTATTCTAATCCATTAACTTAGGATTTTGGGTTGATTGCTGAGCTAAGATTGGCTAGGAGGTTTTGTATTCGTACTCTGTAAATTAATATTAACATTAAATTAATATTGATATTTCTACTCGTGGGATCTTCTACAAATCAAGGCCATAAGTAAGGAGGATTGAAATGTTGATGTATCTAAATTTACTGTAACCTACCCATTGAAGTTTTTTGGGTGATTGGTGATTTTACAGAATTCTGGCTCTTCTTGAATGATCCTTCATTTTTCTTCCCTCAATTCTCTTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATATTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTTTCTTTCTCTATCAGTGTGTGTGTGTTGAAATTACAAACGTTGGTTGTCCCTATACTTGTGTGAAGTGCTTACAAATGGCGATTATTGGTTTTTGCAGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGTCAGCGAACAAAAAACAACTGCAGAACCTTGAAGGGCAAGAAGGTTGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCTATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTAATTTCCTCATGGAAATATAGTTTCTTGCAAATACTGTGTTATTGCTGTGCCATATTCTACTTTACAGATGTGCTCACCCTCTTAAACAAATGCTCAATGTTTCTCTATATGAGTGGTGTTATCTTAACAGATCATTTAGTTCGTTCTGCAACCAAACAACAAATAATAAGTGTTGAAAGTT

mRNA sequence

GTTAGAGCTGGCCTTTATCCATATCCTTCGAGCGGGATGAAGAAGATAAGGTAGCCATTGAAACCGAAACCAGAGAGCCGCTTGGAGTTGTGAATCGAATTGAAAGCCACTTCCTATTCCTAATTTCCTAATGTGCTGATCGCTGTTTGTTGAGTGAGAACTTGGAACACGGGAGATAATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTCTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATATTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGTCAGCGAACAAAAAACAACTGCAGAACCTTGAAGGGCAAGAAGGTTGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGAGGTCTTTGCTATCGAACCGAGTAAATCTCTTCTAAAACCTTTGAGATGTATTGTTTTAACTCTGGAATTGCATCTAATTTCCTCATGGAAATATAGTTTCTTGCAAATACTGTGTTATTGCTGTGCCATATTCTACTTTACAGATGTGCTCACCCTCTTAAACAAATGCTCAATGTTTCTCTATATGAGTGGTGTTATCTTAACAGATCATTTAGTTCGTTCTGCAACCAAACAACAAATAATAAGTGTTGAAAGTT

Coding sequence (CDS)

ATGGCGCAGACTTTAGCAATGCCCCTCGCTCCTTCGCTCTCCGTTATCTGCAATGCTCGGAACTCCAATCCTCTCTCTAACACCCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCAAACAACAAGCGAGTTCAATACTCCCTTCAATATATACATGGTATTGGTCGCAACAATGCTAAGAAAATATTGTTTGATCTAAACGTGGAGAATAAGATAACCAAGGACTTATCTGAGGAGGAACTAATATCTATCAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAACGCACTTGCCATAAGGAGATTGAAAGAGATTCAGTGTTATAGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGTCAGCGAACAAAAAACAACTGCAGAACCTTGAAGGGCAAGAAGGTTGCCATTGCAGGGAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR

Homology

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BLAST of Lsi09G009910 vs. Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.7e-66
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Lsi09G009910 vs. Swiss-Prot
Match: RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 8.6e-39
Identity = 89/153 (58.17%), Postives = 114/153 (74.51%), Query Frame = 1


Query: 5   LAMPLAPSLSVICNARNSNPLSNTLSFPISNPQV---RGLQIKCVRVGGVEIPNNKRVQY 64
           +++P+A S S+  +AR     S+++SFP          GLQI+C+R+GGVEIPN+KRV+Y
Sbjct: 7   VSVPIATS-SLPLSARGR---SSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEY 66

Query: 65  SLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIR 124
           SLQYIHGIGR+ +++IL DLN +NK+TKDLSEEE+I +R E          +RFN +AI 
Sbjct: 67  SLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRKE----------KRFNRVAIE 126

Query: 125 RLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKG 155
           RLKEI+CYRGIRH  GLP RGQRTKNNCRTLKG
Sbjct: 127 RLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG 145

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BLAST of Lsi09G009910 vs. Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-31
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 1


Query: 26  SNTLSFPISNPQVR-----GLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Lsi09G009910 vs. Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 63/119 (52.94%), Postives = 92/119 (77.31%), Query Frame = 1


Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKI-TKDLSEEELISIRDEVSK 106
           R+ G++IP++KRV  +L YI+G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

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BLAST of Lsi09G009910 vs. Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-28
Identity = 64/125 (51.20%), Postives = 88/125 (70.40%), Query Frame = 1


Query: 35  NPQVRGLQIKCVRVGGV---EIPNNKRVQYSLQYIHGIGRNNAKKILFDLNVENKITKDL 94
           N  V G++++ + +GG    EIP+NKR+ Y+LQ +HGIGR+ A+ I+ +L VENK  KDL
Sbjct: 18  NLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDL 77

Query: 95  SEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRT 154
           S+ EL SIR+ +SKY+I  DL++     + RL  IQCYRGIRH+  LPCRGQRT  N RT
Sbjct: 78  SKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNART 137

Query: 155 LKGKK 157
            + +K
Sbjct: 138 RRSRK 142

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BLAST of Lsi09G009910 vs. TrEMBL
Match: A0A0A0KN28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 5.7e-82
Identity = 158/167 (94.61%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT A+PLA SLS+I N+RN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. TrEMBL
Match: M5XM26_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012483mg PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 1.6e-71
Identity = 141/166 (84.94%), Postives = 151/166 (90.96%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLAMPLAPSLSVICN RN NPLSN+LSFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSLSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  IRDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]

BLAST of Lsi09G009910 vs. TrEMBL
Match: W9QNB6_9ROSA (30S ribosomal protein S13 OS=Morus notabilis GN=L484_020141 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.0e-70
Identity = 135/168 (80.36%), Postives = 153/168 (91.07%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLAMP+APSLS ICN  +S  LSN LSFP +NP Q+ GL +KC RVGGVEIPNNKR+
Sbjct: 1   MAQTLAMPVAPSLSAICNGLSSISLSNRLSFPTTNPLQIGGLSVKCARVGGVEIPNNKRI 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR +A+KIL DL++ENK+TKD SE+ELI +RDEVSKYMIEGDLRRFNALA
Sbjct: 61  EFSLQYVHGIGRTSARKILNDLSMENKLTKDFSEDELIILRDEVSKYMIEGDLRRFNALA 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           IRRLKEIQCYRG+RHI+GLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 IRRLKEIQCYRGVRHIKGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168

[Close]

BLAST of Lsi09G009910 vs. TrEMBL
Match: A0A067GQ31_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030930mg PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.6e-70
Identity = 137/169 (81.07%), Postives = 153/169 (90.53%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSN-TLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           M QTLAMP+AP+LSVICN  N+N L+N +LSFP+S  PQ  GL I+C RVGGVEIPNNKR
Sbjct: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHG+GR  A++IL DL +ENKITKD+SEEELI+IRDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AIRRLKEIQCYRGIRHIQGLPCRGQ TKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169

[Close]

BLAST of Lsi09G009910 vs. TrEMBL
Match: V4SI28_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002692mg PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 8.6e-70
Identity = 137/169 (81.07%), Postives = 153/169 (90.53%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSN-TLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           M QTLAMP+AP+LSVICN  N+N L+N +LSFP+S  PQ  GL I+C RVGGVEIPNNKR
Sbjct: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHG+GR  A++IL DL +ENKITKD+SEEELI+IRDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AIRRLKEIQCYRGIRHIQGLPCRGQ TKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169

[Close]

BLAST of Lsi09G009910 vs. TAIR10
Match: AT5G14320.1 (AT5G14320.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 253.4 bits (646), Expect = 9.4e-68
Identity = 129/169 (76.33%), Postives = 147/169 (86.98%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +AMP+A SLS+ICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEELI +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of Lsi09G009910 vs. TAIR10
Match: AT1G77750.1 (AT1G77750.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 137.9 bits (346), Expect = 5.8e-33
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 1


Query: 26  SNTLSFPISNPQVR-----GLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: gi|659131717|ref|XP_008465819.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 320.1 bits (819), Expect = 2.3e-84
Identity = 161/167 (96.41%), Postives = 166/167 (99.40%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLA+PLAPSLS+ICN+RNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: gi|449445132|ref|XP_004140327.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 8.2e-82
Identity = 158/167 (94.61%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT A+PLA SLS+I N+RN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: gi|596288565|ref|XP_007225958.1| (hypothetical protein PRUPE_ppa012483mg [Prunus persica])

HSP 1 Score: 276.9 bits (707), Expect = 2.3e-71
Identity = 141/166 (84.94%), Postives = 151/166 (90.96%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLAMPLAPSLSVICN RN NPLSN+LSFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSLSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  IRDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: gi|657963317|ref|XP_008373269.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Malus domestica])

HSP 1 Score: 276.6 bits (706), Expect = 2.9e-71
Identity = 143/166 (86.14%), Postives = 149/166 (89.76%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLAMPLAPSLSVICN RN NPLSNTLSFPI  P QV GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNLNPLSNTLSFPIRPPNQVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           +YSLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  IRDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EYSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRH QGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHSQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]

BLAST of Lsi09G009910 vs. NCBI nr
Match: gi|645256353|ref|XP_008233913.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Prunus mume])

HSP 1 Score: 275.8 bits (704), Expect = 5.0e-71
Identity = 140/166 (84.34%), Postives = 151/166 (90.96%), Query Frame = 1


Query: 1   MAQTLAMPLAPSLSVICNARNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLAMPLAPSLSVICN RN NPLSN++SFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSVSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  IRDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

The following BLAST results are available for this feature:

BLAST of Lsi09G009910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR13_ARATH	1.7e-66	76.33	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 S...	[more]
RR13_SPIOL	8.6e-39	58.17	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2	[more]
RT13_ARATH	1.0e-31	49.66	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RP...	[more]
RS13_PHYAS	2.4e-28	52.94	30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1	[more]
RT13_SOYBN	2.4e-28	51.20	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 ...	[more]

BLAST of Lsi09G009910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN28_CUCSA	5.7e-82	94.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381830 PE=3 SV=1	[more]
M5XM26_PRUPE	1.6e-71	84.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012483mg PE=3 SV=1	[more]
W9QNB6_9ROSA	5.0e-70	80.36	30S ribosomal protein S13 OS=Morus notabilis GN=L484_020141 PE=3 SV=1	[more]
A0A067GQ31_CITSI	8.6e-70	81.07	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g030930mg PE=3 SV=1	[more]
V4SI28_9ROSI	8.6e-70	81.07	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002692mg PE=3 SV=1	[more]

BLAST of Lsi09G009910 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14320.1	9.4e-68	76.33	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	5.8e-33	49.66	Ribosomal protein S13/S18 family	[more]

BLAST of Lsi09G009910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131717\|ref\|XP_008465819.1\|	2.3e-84	96.41	PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]	[more]
gi\|449445132\|ref\|XP_004140327.1\|	8.2e-82	94.61	PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus]	[more]
gi\|596288565\|ref\|XP_007225958.1\|	2.3e-71	84.94	hypothetical protein PRUPE_ppa012483mg [Prunus persica]	[more]
gi\|657963317\|ref\|XP_008373269.1\|	2.9e-71	86.14	PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Malus domestica]	[more]
gi\|645256353\|ref\|XP_008233913.1\|	5.0e-71	84.34	PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR027437	30s_Rbsml_prot_S13_C
IPR019980	Ribosomal_S13_bac-type
IPR018269	Ribosomal_S13_CS
IPR010979	Ribosomal_S13-like_H2TH
IPR001892	Ribosomal_S13

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G009910.1	Lsi09G009910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 45..162 score: 25
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 47..151 score: 6.7
IPR001892	Ribosomal protein S13	PROFILE	PS50159	RIBOSOMAL_S13_2	coord: 48..154 score: 34
IPR010979	Ribosomal protein S13-like, H2TH	unknown	SSF46946	S13-like H2TH domain	coord: 46..157 score: 1.53
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 130..143 scor
IPR019980	Ribosomal protein S13, bacterial-type	TIGRFAMs	TIGR03631	TIGR03631	coord: 47..156 score: 1.8
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	G3DSA:4.10.910.10		coord: 119..165 score: 3.8
None	No IPR available	GENE3D	G3DSA:1.10.8.50		coord: 45..114 score: 2.0
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 41..167 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G009910	Csa5G381830	Cucumber (Chinese Long) v2	culsiB330
Lsi09G009910	CSPI05G14250	Wild cucumber (PI 183967)	cpilsiB330
Lsi09G009910	CmaCh15G007060	Cucurbita maxima (Rimu)	cmalsiB268
Lsi09G009910	CmoCh15G007240	Cucurbita moschata (Rifu)	cmolsiB256
Lsi09G009910	Cla002792	Watermelon (97103) v1	lsiwmB009
Lsi09G009910	ClCG03G009300	Watermelon (Charleston Gray)	lsiwcgB014
Lsi09G009910	Cla97C03G060460	Watermelon (97103) v2	lsiwmbB013
Lsi09G009910	Bhi12G001132	Wax gourd	lsiwgoB009
Lsi09G009910	Cp4.1LG13g04960	Cucurbita pepo (Zucchini)	cpelsiB130
Lsi09G009910	CsGy5G014220	Cucumber (Gy14) v2	cgyblsiB302
Lsi09G009910	Carg01500	Silver-seed gourd	carlsiB754
Lsi09G009910	CsaV3_5G023320	Cucumber (Chinese Long) v3	cuclsiB353

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G009910	Cucurbita maxima (Rimu)	cmalsiB622
Lsi09G009910	Cucurbita moschata (Rifu)	cmolsiB610
Lsi09G009910	Cucurbita pepo (Zucchini)	cpelsiB311
Lsi09G009910	Melon (DHL92) v3.5.1	lsimeB014
Lsi09G009910	Watermelon (97103) v1	lsiwmB011
Lsi09G009910	Melon (DHL92) v3.6.1	lsimedB015
Lsi09G009910	Silver-seed gourd	carlsiB480