MELO3C003061 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003061
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	30S ribosomal protein S13
Location	chr9 : 11100154 .. 11101993 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTATTGATTGAAACCGAAGGCAGAAAGCGGTGGGAGCCTGAGTTGAATCATAATCCAAGTTTGTGTTCGTAATGTGCTGATCGACAAGTTGGAACAGAGGACATCATGGCGCAAACTTTAGCAATCCCACTGGCTCCTTCACTCTCCCTTATCTGCAATTCTCGCAACTCCAATCCTCTATCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTAATTTTTCTCTTCAATTTTACCCTCTTCCTTTCAGTTTCTTCGGTTCTACAATTTCCATTTCCTTGTGCATTTTTTAGGATGTGCAGGGGCTTTCCCCGCTCCAAGTTTGTTTTTGTATTCTCTTAGTTCTTGTTCCTTCTCCGTCCCCTTCGCATGTGTACTACTACGCTTTATCACTATTTGGAACTAATTTATTCTCTATCTTTGTTGAACAATGTGATGAAGCATTTCCTTTCCCCCAATGCTATTCTCTGGAGGAACCAAATTCATGGTTCCAAAACAAAACTATAATAATACTATCCTTAATATTTATCCCACTTTCTGTTTCTCTCGCTCTGTCTGTGCGTGATTGATTATAAGATTAAGCATTTATATAATTGGACTGCAAGAGGAGATTCAGTGGATTAGTGTCTGCATCTTAATGGATTTCTATTTGATCCTTGTATCGTTAGCTTAGGAGTTTTTGAGTTGATTGATATTAGATAACATGTATTCCATCTCAAAATCATCGGTAATGAGTGAGAAAAGTAACTCACCTATCTTAGGGTCGTGAGATTCCTCGGATTTTCAGAAGTGGGATTTTCGAAATTCTCCCTTAAGATGGTATCTCTTTTTGAGTTCACCATTCTTGATCAAATCACAAATCACAGTTAATAGATGTTCAATCTCAAAACCAATTAACAACAAAAGGAATAGTACATTCATCTACTTGTGCGACCTACAAATACCCAAGAATGATGTGTTGATGCATGTAACTTTAGAATAACTTACCAGTCGAGGCTATTTGGATGATTGGTGATTTGACAGTATTCATGTTCTTCCTGAATGGTCCCTCATTTTTCTTCCTTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACACGGTATCGGTCGCAACAATGCTAAGAAAATACTTTTTGATCTAAACCTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAAAATCTGTAAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGGTCTCTCACTCTCTCTCTACCTGTGTGTTTTTGTTAAAATTACAAGAGTTAGTTGTCTCTATACTTACAAATGCAATTGTTTGTTTTGCAGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGCAAGAAGAAGGCTCCTCGTTGATGTCCTTACGATTGAACCGAGTAAATCTCTTTTAAAACCTTTGAGATATATTCTTTTTAACTCTGGAATTGCGTCTAATTTCCTCATGGGAATATAGTTTCTTGCAAACACCCTGTTATGTTATTGTTGCGCCATATTCTACTTTACAGATGTCCTCACCTTCTTTGACGAATGCTCAATGTTCCGTAGATGAGTGGTGTTATCTTAACTGATCATTTAGTTCTTTATGCAACTTAGCAAATAATTAAGTATGGATACAAAGTTTATACTGATATTTTTACAAA

mRNA sequence

AGGTATTGATTGAAACCGAAGGCAGAAAGCGGTGGGAGCCTGAGTTGAATCATAATCCAAGTTTGTGTTCGTAATGTGCTGATCGACAAGTTGGAACAGAGGACATCATGGCGCAAACTTTAGCAATCCCACTGGCTCCTTCACTCTCCCTTATCTGCAATTCTCGCAACTCCAATCCTCTATCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACACGGTATCGGTCGCAACAATGCTAAGAAAATACTTTTTGATCTAAACCTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAAAATCTGTAAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGCAAGAAGAAGGCTCCTCGTTGATGTCCTTACGATTGAACCGAGTAAATCTCTTTTAAAACCTTTGAGATATATTCTTTTTAACTCTGGAATTGCGTCTAATTTCCTCATGGGAATATAGTTTCTTGCAAACACCCTGTTATGTTATTGTTGCGCCATATTCTACTTTACAGATGTCCTCACCTTCTTTGACGAATGCTCAATGTTCCGTAGATGAGTGGTGTTATCTTAACTGATCATTTAGTTCTTTATGCAACTTAGCAAATAATTAAGTATGGATACAAAGTTTATACTGATATTTTTACAAA

Coding sequence (CDS)

ATGGCGCAAACTTTAGCAATCCCACTGGCTCCTTCACTCTCCCTTATCTGCAATTCTCGCAACTCCAATCCTCTATCTAACACTCTCTCCTTCCCCATTTCAAACCCTCAGGTTCGTGGTCTTCAAATCAAGTGTGTACGTGTTGGAGGAGTTGAGATACCGAACAACAAGCGAGTTCAATACTCCCTTCAATATATACACGGTATCGGTCGCAACAATGCTAAGAAAATACTTTTTGATCTAAACCTGGAGAATAAGATAACCAAGGACTTATCTGAGGAAGAACTAAAATCTGTAAGAGATGAAGTTTCCAAGTACATGATTGAAGGAGATCTGAGGCGTTTCAATGCACTTGCCATAAGGAGATTGAAAGAAATTCAGTGTTACCGAGGGATTCGACACATTCAGGGGTTGCCTTGCAGAGGGCAGCGAACGAAAAACAACTGCAGAACCTTGAAGGGTAAGAAGGTTGCTATTGCAGGCAAGAAGAAGGCTCCTCGTTGA

Protein sequence

MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR*

Homology

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BLAST of MELO3C003061 vs. Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.0e-67
Identity = 128/169 (75.74%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +A+P+A SLSLICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEEL  +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

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BLAST of MELO3C003061 vs. Swiss-Prot
Match: RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 2.3e-39
Identity = 88/153 (57.52%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 5   LAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQV---RGLQIKCVRVGGVEIPNNKRVQY 64
           +++P+A S SL  ++R     S+++SFP          GLQI+C+R+GGVEIPN+KRV+Y
Sbjct: 7   VSVPIATS-SLPLSARGR---SSSVSFPAPKKGGIGHGGLQIECIRIGGVEIPNHKRVEY 66

Query: 65  SLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAIR 124
           SLQYIHGIGR+ +++IL DLN +NK+TKDLSEEE+  +R E          +RFN +AI 
Sbjct: 67  SLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRKE----------KRFNRVAIE 126

Query: 125 RLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKG 155
           RLKEI+CYRGIRH  GLP RGQRTKNNCRTLKG
Sbjct: 127 RLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLKG 145

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BLAST of MELO3C003061 vs. Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.0e-32
Identity = 72/147 (48.98%), Postives = 95/147 (64.63%), Query Frame = 1


Query: 26  SNTLSFPISNPQVR-----GLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +EL  +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

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BLAST of MELO3C003061 vs. Swiss-Prot
Match: RS13_PHYAS (30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-29
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = 1


Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKI-TKDLSEEELKSVRDEVSK 106
           R+ G++IP++KRV  +L YI+G+G+  ++KIL +LN+ + I  K+L+E++L S+R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGKKLSQKILNELNISHDIRVKNLTEQQLSSLRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  +IAGKKK
Sbjct: 63  YSVEGDLRREVTLNIKRLMEIGVYRGLRHRKGLPVRGQKTRNNAHTVKGKPKSIAGKKK 121

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BLAST of MELO3C003061 vs. Swiss-Prot
Match: RS13_ONYPE (30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain OY-M) GN=rpsM PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.1e-29
Identity = 63/119 (52.94%), Postives = 88/119 (73.95%), Query Frame = 1


Query: 47  RVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFDLNLENKI-TKDLSEEELKSVRDEVSK 106
           R+ G++IP++KRV  +L YI+G+G   + KIL +LN++  I  K+L+E++L ++R E++K
Sbjct: 3   RIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITK 62

Query: 107 YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 165
           Y +EGDLRR   L I+RL EI  YRG+RH +GLP RGQ+T+NN  T+KGK  AIAGKKK
Sbjct: 63  YNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121

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BLAST of MELO3C003061 vs. TrEMBL
Match: A0A0A0KN28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381830 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-83
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

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BLAST of MELO3C003061 vs. TrEMBL
Match: M5XM26_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012483mg PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.4e-72
Identity = 138/166 (83.13%), Postives = 151/166 (90.96%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLA+PLAPSLS+ICN RN NPLSN+LSFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSLSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  +RDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

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BLAST of MELO3C003061 vs. TrEMBL
Match: W9QNB6_9ROSA (30S ribosomal protein S13 OS=Morus notabilis GN=L484_020141 PE=3 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-70
Identity = 133/168 (79.17%), Postives = 152/168 (90.48%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLA+P+APSLS ICN  +S  LSN LSFP +NP Q+ GL +KC RVGGVEIPNNKR+
Sbjct: 1   MAQTLAMPVAPSLSAICNGLSSISLSNRLSFPTTNPLQIGGLSVKCARVGGVEIPNNKRI 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR +A+KIL DL++ENK+TKD SE+EL  +RDEVSKYMIEGDLRRFNALA
Sbjct: 61  EFSLQYVHGIGRTSARKILNDLSMENKLTKDFSEDELIILRDEVSKYMIEGDLRRFNALA 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           IRRLKEIQCYRG+RHI+GLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 IRRLKEIQCYRGVRHIKGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168

[Close]

BLAST of MELO3C003061 vs. TrEMBL
Match: A0A0D2PQ90_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G091500 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.0e-70
Identity = 136/168 (80.95%), Postives = 149/168 (88.69%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLA+P+APSLS ICN  +S  LSNT S P+SNP +  GL I CVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPVAPSLSFICNKVSSMSLSNTASLPVSNPPKHHGLSIVCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALA 120
           ++SLQYIHGIGR  A+KIL DL +ENKITKDLSEEEL ++RDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYIHGIGRTRARKILCDLQMENKITKDLSEEELITIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           IRRLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 121 IRRLKEIQCYRGVRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 168

[Close]

BLAST of MELO3C003061 vs. TrEMBL
Match: V4SI28_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002692mg PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.1e-70
Identity = 133/169 (78.70%), Postives = 152/169 (89.94%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSN-TLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           M QTLA+P+AP+LS+ICN  N+N L+N +LSFP+S  PQ  GL I+C RVGGVEIPNNKR
Sbjct: 1   MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHG+GR  A++IL DL +ENKITKD+SEEEL ++RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AIRRLKEIQCYRGIRHIQGLPCRGQ TKNNCRTLKGK+VAIAGKKKAPR
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 169

[Close]

BLAST of MELO3C003061 vs. TAIR10
Match: AT5G14320.1 (AT5G14320.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 256.5 bits (654), Expect = 1.1e-68
Identity = 128/169 (75.74%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLS-NTLSFPISN-PQVRGLQIKCVRVGGVEIPNNKR 60
           MAQ +A+P+A SLSLICN   SNPLS NTL+ P SN P  + L I+C RVGGVEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VQYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNAL 120
           ++YSLQYIHGIGR  A++IL DL +ENKITKD++EEEL  +RDEVSKYMIEGDLRRFNAL
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           AI+RLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKK  +
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169

[Close]

BLAST of MELO3C003061 vs. TAIR10
Match: AT1G77750.1 (AT1G77750.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 138.7 bits (348), Expect = 3.4e-33
Identity = 72/147 (48.98%), Postives = 95/147 (64.63%), Query Frame = 1


Query: 26  SNTLSFPISNPQVR-----GLQIKCVRVGGVEIPNNKRVQYSLQYIHGIGRNNAKKILFD 85
           S T  F IS   +R     GL+++ +RVG  E+PNNK ++  LQ ++GIGR  + ++L  
Sbjct: 7   SATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCH 66

Query: 86  LNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPC 145
           L + NK+ +DL+ +EL  +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPC
Sbjct: 67  LGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPC 126

Query: 146 RGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RGQRT  N RT KGK VAIAGKKKAPR
Sbjct: 127 RGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of MELO3C003061 vs. NCBI nr
Match: gi|659131717|ref|XP_008465819.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo])

HSP 1 Score: 334.3 bits (856), Expect = 1.2e-88
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 167

[Close]

BLAST of MELO3C003061 vs. NCBI nr
Match: gi|449445132|ref|XP_004140327.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 2.0e-83
Identity = 158/167 (94.61%), Postives = 162/167 (97.01%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60
           MAQT AIPLA SLSLI NSRN NPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ
Sbjct: 1   MAQTSAIPLAHSLSLISNSRNFNPLSNTLSFPISNPQVRGLQIKCVRVGGVEIPNNKRVQ 60

Query: 61  YSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALAI 120
           YSLQY+HGIGRNNAKKILFDLN+ENKITKDLSEEEL S+RDEVSKYMIEGDLRRFNALAI
Sbjct: 61  YSLQYVHGIGRNNAKKILFDLNVENKITKDLSEEELISIRDEVSKYMIEGDLRRFNALAI 120

Query: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKAPR 168
           RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKK+AIAGKKKAPR
Sbjct: 121 RRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKAPR 167

[Close]

BLAST of MELO3C003061 vs. NCBI nr
Match: gi|596288565|ref|XP_007225958.1| (hypothetical protein PRUPE_ppa012483mg [Prunus persica])

HSP 1 Score: 280.4 bits (716), Expect = 2.0e-72
Identity = 138/166 (83.13%), Postives = 151/166 (90.96%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLA+PLAPSLS+ICN RN NPLSN+LSFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSLSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  +RDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]

BLAST of MELO3C003061 vs. NCBI nr
Match: gi|657963317|ref|XP_008373269.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Malus domestica])

HSP 1 Score: 280.0 bits (715), Expect = 2.7e-72
Identity = 140/166 (84.34%), Postives = 149/166 (89.76%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLA+PLAPSLS+ICN RN NPLSNTLSFPI  P QV GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNLNPLSNTLSFPIRPPNQVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALA 120
           +YSLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  +RDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EYSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRH QGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHSQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

[Close]

BLAST of MELO3C003061 vs. NCBI nr
Match: gi|645256353|ref|XP_008233913.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Prunus mume])

HSP 1 Score: 279.3 bits (713), Expect = 4.6e-72
Identity = 137/166 (82.53%), Postives = 151/166 (90.96%), Query Frame = 1


Query: 1   MAQTLAIPLAPSLSLICNSRNSNPLSNTLSFPISNP-QVRGLQIKCVRVGGVEIPNNKRV 60
           MAQTLA+PLAPSLS+ICN RN NPLSN++SFP+ NP +V GL IKCVRVGGVEIPNNKRV
Sbjct: 1   MAQTLAMPLAPSLSVICNGRNPNPLSNSVSFPLRNPNKVGGLSIKCVRVGGVEIPNNKRV 60

Query: 61  QYSLQYIHGIGRNNAKKILFDLNLENKITKDLSEEELKSVRDEVSKYMIEGDLRRFNALA 120
           ++SLQY+HGIGR  A+ IL DLN+ENKITKDLSEEEL  +RDEVSKYMIEGDLRRFNAL 
Sbjct: 61  EFSLQYVHGIGRTRARTILIDLNMENKITKDLSEEELTIIRDEVSKYMIEGDLRRFNALN 120

Query: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKA 166
           IRRLKEIQCYRGIRHIQGLPCRGQRTKNN RTLKGK+V +AGKKKA
Sbjct: 121 IRRLKEIQCYRGIRHIQGLPCRGQRTKNNTRTLKGKRVTVAGKKKA 166

The following BLAST results are available for this feature:

BLAST of MELO3C003061 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR13_ARATH	2.0e-67	75.74	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 S...	[more]
RR13_SPIOL	2.3e-39	57.52	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2	[more]
RT13_ARATH	6.0e-32	48.98	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RP...	[more]
RS13_PHYAS	1.3e-29	52.94	30S ribosomal protein S13 OS=Phytoplasma australiense GN=rpsM PE=3 SV=1	[more]
RS13_ONYPE	2.1e-29	52.94	30S ribosomal protein S13 OS=Onion yellows phytoplasma (strain OY-M) GN=rpsM PE=...	[more]

BLAST of MELO3C003061 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KN28_CUCSA	1.4e-83	94.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381830 PE=3 SV=1	[more]
M5XM26_PRUPE	1.4e-72	83.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012483mg PE=3 SV=1	[more]
W9QNB6_9ROSA	1.7e-70	79.17	30S ribosomal protein S13 OS=Morus notabilis GN=L484_020141 PE=3 SV=1	[more]
A0A0D2PQ90_GOSRA	3.0e-70	80.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G091500 PE=3 SV=1	[more]
V4SI28_9ROSI	5.1e-70	78.70	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002692mg PE=3 SV=1	[more]

BLAST of MELO3C003061 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14320.1	1.1e-68	75.74	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	3.4e-33	48.98	Ribosomal protein S13/S18 family	[more]

BLAST of MELO3C003061 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131717\|ref\|XP_008465819.1\|	1.2e-88	100.00	PREDICTED: 30S ribosomal protein S13, chloroplastic [Cucumis melo]	[more]
gi\|449445132\|ref\|XP_004140327.1\|	2.0e-83	94.61	PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Cucumis sativus]	[more]
gi\|596288565\|ref\|XP_007225958.1\|	2.0e-72	83.13	hypothetical protein PRUPE_ppa012483mg [Prunus persica]	[more]
gi\|657963317\|ref\|XP_008373269.1\|	2.7e-72	84.34	PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Malus domestica]	[more]
gi\|645256353\|ref\|XP_008233913.1\|	4.6e-72	82.53	PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001892	Ribosomal_S13
IPR010979	Ribosomal_S13-like_H2TH
IPR018269	Ribosomal_S13_CS
IPR019980	Ribosomal_S13_bac-type
IPR027437	30s_Rbsml_prot_S13_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU43952	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003061T1	MELO3C003061T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU43952	MU43952	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 45..162 score: 25
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 47..151 score: 5.6
IPR001892	Ribosomal protein S13	PROFILE	PS50159	RIBOSOMAL_S13_2	coord: 48..154 score: 34
IPR010979	Ribosomal protein S13-like, H2TH	unknown	SSF46946	S13-like H2TH domain	coord: 46..157 score: 2.43
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 130..143 scor
IPR019980	Ribosomal protein S13, bacterial-type	TIGRFAMs	TIGR03631	TIGR03631	coord: 47..156 score: 2.2
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	G3DSA:4.10.910.10		coord: 119..165 score: 3.8
None	No IPR available	unknown	Coil	Coil	coord: 89..109 scor
None	No IPR available	GENE3D	G3DSA:1.10.8.50		coord: 45..114 score: 4.7
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 41..167 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003061	Csa5G381830	Cucumber (Chinese Long) v2	cumeB350
MELO3C003061	Cla002792	Watermelon (97103) v1	mewmB012
MELO3C003061	CSPI05G14250	Wild cucumber (PI 183967)	cpimeB343
MELO3C003061	CmaCh15G007060	Cucurbita maxima (Rimu)	cmameB252
MELO3C003061	CmoCh15G007240	Cucurbita moschata (Rifu)	cmomeB240
MELO3C003061	CsGy5G014220	Cucumber (Gy14) v2	cgybmeB294
MELO3C003061	CsaV3_5G023320	Cucumber (Chinese Long) v3	cucmeB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003061	Cucurbita maxima (Rimu)	cmameB636
MELO3C003061	Cucurbita moschata (Rifu)	cmomeB626
MELO3C003061	Wild cucumber (PI 183967)	cpimeB262
MELO3C003061	Watermelon (Charleston Gray)	mewcgB010
MELO3C003061	Watermelon (Charleston Gray)	mewcgB023
MELO3C003061	Watermelon (97103) v1	mewmB014
MELO3C003061	Cucurbita pepo (Zucchini)	cpemeB158
MELO3C003061	Cucurbita pepo (Zucchini)	cpemeB360
MELO3C003061	Bottle gourd (USVL1VR-Ls)	lsimeB280
MELO3C003061	Cucumber (Gy14) v2	cgybmeB230
MELO3C003061	Silver-seed gourd	carmeB0531
MELO3C003061	Silver-seed gourd	carmeB0822
MELO3C003061	Watermelon (97103) v2	mewmbB017
MELO3C003061	Watermelon (97103) v2	mewmbB020
MELO3C003061	Wax gourd	mewgoB015
MELO3C003061	Wax gourd	mewgoB049