CmoCh15G005370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G005370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ribosomal protein S17, component of cytosolic 80S ribosome and 40S small subunit
Location	Cmo_Chr15 : 2544398 .. 2546723 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAAACTGTATACAAAAAGCCACATAGAATCATTCCTCAGCTGGCAAGAAACCCTAAAGTAGCCCTTCACTTATATCTCCCTCTTTCGCATTAGGGTTTCTCTTAAGTCGCGGCAGCAGCAGAACTTCGCTCTCTTTCTGGTGCTCTTCCTTACTCTTTCGTTCTCCTTCCAGGTTAGTTCTTCTATCTCAGGTTTCTTATTTATCTTTTCGATCGGTCGTGTTATGCAATTGTTTGTTCCTTTTTAATGTTGAGTTTTTCATTTATCGAGTTTGTTGGATTCATGCCTTCTGTTTTGGAGAATTGAATCGGTAATGGATTGATTCTGCCTTTGCCTTTGTATAGTTATGGAAAATTTGATGAGAATTTTTTTAATCTGTTTCGTGGTTGATGAGAAAGAGAAGTCTCTATCGCCTCTTTAAGCTTTTGGGCTGTCTTTGAGGTTATATGTTGTTTGTGATGATCAATGTCTCATAAACTTATAGCTACCTGATGTTGAATGTTCAATTTTTAAGAATGTAGGTTAGAAGATATATATGTATGTATATAAACATTCTCTGTTTTAGTTTATCTGTGTGATTCTCAAGTTTTTCTTCCTAGTGTAGGATTGAAGTGTATTTGGGTTTTTACTTGAATGACGATACAGGGTGAATGTGTTGTTGTAATGTATGGAAAAACACCTTTTTTTTTATACCTAGATTACTGAGATATTGATCTATGAGTTTCTGTAATACTGTTGTATGTCCTGATTGTGAAAGTAGTGTGATACAGGTTATCCTTTTGTGTTTCTCAGGTAAAGTTTGGTAGAAGATGGGTCGTGTTCGCACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTATTACTCTAAAATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTACGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGGCCAGTCAGGGGCATCTCATTGAAGTTGCAAGAAGAAGAGCGCGAACGCCGTATGGACTTCGTGCCAGACGAATCAGCCATTAAAATTAACGAAATCAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTTGTGGAGGTTGAGCCACAGGCTATGAATCTGCCCCAAGCTTTCGGTCGGGGTGCAGGTGGCCCAAGGAGATACTAAGGTAACTGAGACCACGCAACAGGTTTTGGGAATTAGAAGTTTTTTGTTATTCAATATCATAAGACCATGGACGTTCTTGTTGCTAGTTATTTTCATATTGGTCCTTATTTTTGGTTCTTGTCTTTTTAGTTTTGATTTTGAATGGATGATAATTTTGTTTCATGTATTGGAGATCTATGAAGTAAAAGTTTTTGCCATTAGTCAGATTTCACCGCTGCCATTCTCGCTCATTTTGTGCAGCTTCCTTATGAATTTGCTCTTTTCTGAGGCATTTCTTTTGATAAATCATGTGGGGTGCTGTTTAATCTTCTTCGGTTATGAGGTTTCGAATCCCTCTTCGATTCATCGTATGATCATGCAAAGTTACTACATTGTGGTATTTTGATTTTGATTTTGATTTTGATTTTGATTTATGATTGAAACTTAAGATTTGGTTTTACGTTCTGTTGTTGAATTTTGGTTCGGGTTAAACTTTCGGGTTGCATCACTATATTTGATGCACATGGCCTTAAAATACATAAGGGTACACCCACCTAATATAAGGTATGCGATTCTATTATGTTCTGCTCGACACTACTTTGCACAACACCAACGAGGTGCGTCTAGCTAAAGAACGACTAAGACTTTCCGACTAGAATTGTGCATCAACTGATCTCAAAATTGAAATCAGAGGCAAATAATAATAATAAACATTGAGAAATAAGAAAGGGAAAGTTAGGATAGAAACTTTGGTAAAGAACCCATTGCTGTCTCGGTTGTGCTATTAGAGACTATGGAGAAGTCGGAATAGAAAAACACTCATCTTAGGGTGGGCTTACTACTTGGATGTTTTCAGCAATTATTTGCTCTTCACTTAGTTACCCACAATTTATCATGGGTACGATAACGGTGCACTAGAGGTGTATCCTTCCCGATCCTTGCAATGTTCTAATGCTCACACTGGATATGGATCGAACTATTTCATGACGTTCTAAACCCAACTCATGTATTGCTTTAGTGGGCGAATAACCCAACTCCTGGAACATAATATAGCTCTAGGTGGCAAAGAGTCGACATTGAAGTGTCAAACCTTGCCGTTGATGTGA

mRNA sequence

ATGAAAAAAACTGTATACAAAAAGCCACATAGAATCATTCCTCAGCTGGCAAGAAACCCTAAATCGCGGCAGCAGCAGAACTTCGCTCTCTTTCTGGTGCTCTTCCTTACTCTTTCGTTCTCCTTCCAGAAGATGGGTCGTGTTCGCACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTATTACTCTAAAATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTACGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGGCCAGTCAGGGGCATCTCATTGAAGTTGCAAGAAGAAGAGCGCGAACGCCGTATGGACTTCGTGCCAGACGAATCAGCCATTAAAATTAACGAAATCAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTTGTGGAGGTTGAGCCACAGGCTATGAATCTGCCCCAAGCTTTCGGTCGGGGTGCAGGTGGCAAAGAGTCGACATTGAAGTGTCAAACCTTGCCGTTGATGTGA

Coding sequence (CDS)

ATGAAAAAAACTGTATACAAAAAGCCACATAGAATCATTCCTCAGCTGGCAAGAAACCCTAAATCGCGGCAGCAGCAGAACTTCGCTCTCTTTCTGGTGCTCTTCCTTACTCTTTCGTTCTCCTTCCAGAAGATGGGTCGTGTTCGCACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTATTACTCTAAAATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTACGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGGCCAGTCAGGGGCATCTCATTGAAGTTGCAAGAAGAAGAGCGCGAACGCCGTATGGACTTCGTGCCAGACGAATCAGCCATTAAAATTAACGAAATCAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTTGTGGAGGTTGAGCCACAGGCTATGAATCTGCCCCAAGCTTTCGGTCGGGGTGCAGGTGGCAAAGAGTCGACATTGAAGTGTCAAACCTTGCCGTTGATGTGA

Homology

[Close]

BLAST of CmoCh15G005370 vs. Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 1.1e-58
Identity = 119/139 (85.61%), Postives = 128/139 (92.09%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVE- 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK + I+VDKETLDML+A GMSD+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 165 -VEPQAMNLPQAFGRGAGG 182
             EPQA+    ++GRG GG
Sbjct: 121 AAEPQAVAALPSYGRGGGG 139

[Close]

BLAST of CmoCh15G005370 vs. Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 226.5 bits (576), Expect = 2.5e-58
Identity = 116/136 (85.29%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 165 EPQAMNLPQAFGRGAG 181
           E Q    P  FGR AG
Sbjct: 121 ETQQAMAPAVFGRPAG 136

[Close]

BLAST of CmoCh15G005370 vs. Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-57
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 165 EPQAMNLP-QAFGRG 179
           EPQ    P  AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]

BLAST of CmoCh15G005370 vs. Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 218.0 bits (554), Expect = 9.0e-56
Identity = 115/133 (86.47%), Postives = 121/133 (90.98%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 165 EPQAMNLP-QAFG 177
           EPQ    P  AFG
Sbjct: 121 EPQQAMAPIAAFG 133

[Close]

BLAST of CmoCh15G005370 vs. Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3)

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-55
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 165 EPQAMNLP-QAFGRG 179
           +PQ    P  AFG G
Sbjct: 121 DPQQAMAPIPAFGGG 135

[Close]

BLAST of CmoCh15G005370 vs. TrEMBL
Match: A0A0A0KB47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046270 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.0e-65
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 165 EPQAMNLPQAFGRGAGG 182
           EPQAM  PQAFGRGAGG
Sbjct: 121 EPQAMIPPQAFGRGAGG 137

[Close]

BLAST of CmoCh15G005370 vs. TrEMBL
Match: A0A059BHN5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02685 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.0e-61
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK NEIKVDKETLDMLA+ GMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKTNEIKVDKETLDMLASLGMSDIPGLVEV 120

Query: 165 EPQAMNLPQAFGRG 179
           EPQ M  PQAFGRG
Sbjct: 121 EPQVMMPPQAFGRG 134

[Close]

BLAST of CmoCh15G005370 vs. TrEMBL
Match: A9PA24_POPTR (40S ribosomal protein S17 OS=Populus trichocarpa GN=POPTR_0010s24760g PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.2e-61
Identity = 125/138 (90.58%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI+EIKVDKET+DMLAA GMSD+PGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIHEIKVDKETIDMLAALGMSDVPGLVEV 120

Query: 165 EPQAMNLPQAFGRGAGGK 183
           EPQ M   Q FGRG G +
Sbjct: 121 EPQPMLPTQGFGRGGGAR 138

[Close]

BLAST of CmoCh15G005370 vs. TrEMBL
Match: I3NMJ1_HEVBR (40S ribosomal protein S17B OS=Hevea brasiliensis GN=RPS17B PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.5e-61
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRN+IAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNRIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI+EIKVDKET+DMLAA GMSDIPGLVE 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIDEIKVDKETIDMLAALGMSDIPGLVEF 120

Query: 165 EPQAMNLPQAFGRGAGG 182
           EPQ +  PQ FGRG  G
Sbjct: 121 EPQPLVPPQVFGRGQAG 137

[Close]

BLAST of CmoCh15G005370 vs. TrEMBL
Match: A0A067DHC4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039014mg PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.5e-61
Identity = 125/136 (91.91%), Postives = 128/136 (94.12%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETLDMLAA GMSDI GLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEV 120

Query: 165 EPQAMNLPQAFGRGAG 181
           EPQ+M  P  FGRG G
Sbjct: 121 EPQSMITPPVFGRGGG 136

[Close]

BLAST of CmoCh15G005370 vs. TAIR10
Match: AT3G10610.1 (AT3G10610.1 Ribosomal S17 family protein)

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59
Identity = 116/136 (85.29%), Postives = 125/136 (91.91%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 165 EPQAMNLPQAFGRGAG 181
           E Q    P  FGR AG
Sbjct: 121 ETQQAMAPAVFGRPAG 136

[Close]

BLAST of CmoCh15G005370 vs. TAIR10
Match: AT5G04800.1 (AT5G04800.1 Ribosomal S17 family protein)

HSP 1 Score: 222.6 bits (566), Expect = 2.1e-58
Identity = 117/135 (86.67%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 165 EPQAMNLP-QAFGRG 179
           EPQ    P  AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]

BLAST of CmoCh15G005370 vs. TAIR10
Match: AT2G05220.1 (AT2G05220.1 Ribosomal S17 family protein)

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-57
Identity = 115/133 (86.47%), Postives = 121/133 (90.98%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 165 EPQAMNLP-QAFG 177
           EPQ    P  AFG
Sbjct: 121 EPQQAMAPIAAFG 133

[Close]

BLAST of CmoCh15G005370 vs. TAIR10
Match: AT2G04390.1 (AT2G04390.1 Ribosomal S17 family protein)

HSP 1 Score: 217.6 bits (553), Expect = 6.6e-57
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK +EIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 165 EPQAMNLP-QAFGRG 179
           +PQ    P  AFG G
Sbjct: 121 DPQQAMAPIPAFGGG 135

[Close]

BLAST of CmoCh15G005370 vs. NCBI nr
Match: gi|659113508|ref|XP_008456611.1| (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 1.3e-65
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 165 EPQAMNLPQAFGRGAGG 182
           EPQAM  PQAFGRGAGG
Sbjct: 121 EPQAMIPPQAFGRGAGG 137

[Close]

BLAST of CmoCh15G005370 vs. NCBI nr
Match: gi|449446303|ref|XP_004140911.1| (PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 2.8e-65
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 165 EPQAMNLPQAFGRGAGG 182
           EPQAM  PQAFGRGAGG
Sbjct: 121 EPQAMIPPQAFGRGAGG 137

[Close]

BLAST of CmoCh15G005370 vs. NCBI nr
Match: gi|702422741|ref|XP_010067125.1| (PREDICTED: 40S ribosomal protein S17-2 [Eucalyptus grandis])

HSP 1 Score: 244.6 bits (623), Expect = 1.4e-61
Identity = 126/134 (94.03%), Postives = 129/134 (96.27%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK NEIKVDKETLDMLA+ GMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKTNEIKVDKETLDMLASLGMSDIPGLVEV 120

Query: 165 EPQAMNLPQAFGRG 179
           EPQ M  PQAFGRG
Sbjct: 121 EPQVMMPPQAFGRG 134

[Close]

BLAST of CmoCh15G005370 vs. NCBI nr
Match: gi|743868105|ref|XP_011032911.1| (PREDICTED: 40S ribosomal protein S17-like [Populus euphratica])

HSP 1 Score: 243.8 bits (621), Expect = 2.5e-61
Identity = 125/138 (90.58%), Postives = 129/138 (93.48%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI EIKVDKET+DMLAA GMSD PG+VEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIQEIKVDKETIDMLAALGMSDFPGIVEV 120

Query: 165 EPQAMNLPQAFGRGAGGK 183
           EPQ M L Q FGRG G +
Sbjct: 121 EPQPMVLTQGFGRGGGAR 138

[Close]

BLAST of CmoCh15G005370 vs. NCBI nr
Match: gi|566192614|ref|XP_006378824.1| (hypothetical protein POPTR_0010s24760g [Populus trichocarpa])

HSP 1 Score: 243.4 bits (620), Expect = 3.2e-61
Identity = 125/138 (90.58%), Postives = 130/138 (94.20%), Query Frame = 1


Query: 45  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 104
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 105 IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 164
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI+EIKVDKET+DMLAA GMSD+PGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIHEIKVDKETIDMLAALGMSDVPGLVEV 120

Query: 165 EPQAMNLPQAFGRGAGGK 183
           EPQ M   Q FGRG G +
Sbjct: 121 EPQPMLPTQGFGRGGGAR 138

The following BLAST results are available for this feature:

BLAST of CmoCh15G005370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS17_SOLLC	1.1e-58	85.61	40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3	[more]
RS173_ARATH	2.5e-58	85.29	40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3	[more]
RS174_ARATH	3.7e-57	86.67	40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3	[more]
RS172_ARATH	9.0e-56	86.47	40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3	[more]
RS171_ARATH	1.2e-55	85.19	40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3	[more]

BLAST of CmoCh15G005370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB47_CUCSA	2.0e-65	97.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046270 PE=3 SV=1	[more]
A0A059BHN5_EUCGR	1.0e-61	94.03	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02685 PE=3 SV=1	[more]
A9PA24_POPTR	2.2e-61	90.58	40S ribosomal protein S17 OS=Populus trichocarpa GN=POPTR_0010s24760g PE=2 SV=1	[more]
I3NMJ1_HEVBR	8.5e-61	90.51	40S ribosomal protein S17B OS=Hevea brasiliensis GN=RPS17B PE=2 SV=1	[more]
A0A067DHC4_CITSI	8.5e-61	91.91	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039014mg PE=3 SV=1	[more]

BLAST of CmoCh15G005370 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G10610.1	1.4e-59	85.29	Ribosomal S17 family protein	[more]
AT5G04800.1	2.1e-58	86.67	Ribosomal S17 family protein	[more]
AT2G05220.1	5.1e-57	86.47	Ribosomal S17 family protein	[more]
AT2G04390.1	6.6e-57	85.19	Ribosomal S17 family protein	[more]

BLAST of CmoCh15G005370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113508\|ref\|XP_008456611.1\|	1.3e-65	97.81	PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo]	[more]
gi\|449446303\|ref\|XP_004140911.1\|	2.8e-65	97.08	PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus]	[more]
gi\|702422741\|ref\|XP_010067125.1\|	1.4e-61	94.03	PREDICTED: 40S ribosomal protein S17-2 [Eucalyptus grandis]	[more]
gi\|743868105\|ref\|XP_011032911.1\|	2.5e-61	90.58	PREDICTED: 40S ribosomal protein S17-like [Populus euphratica]	[more]
gi\|566192614\|ref\|XP_006378824.1\|	3.2e-61	90.58	hypothetical protein POPTR_0010s24760g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001210	Ribosomal_S17e
IPR018273	Ribosomal_S17e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G005370.1	CmoCh15G005370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	GENE3D	G3DSA:1.10.60.20		coord: 45..106 score: 1.5
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 45..107 score: 19
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 40..188 score: 2.9E
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 45..160 score: 3.0
IPR001210	Ribosomal protein S17e	unknown	SSF116820	Rps17e-like	coord: 45..106 score: 4.05
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 85..100 scor
None	No IPR available	PANTHER	PTHR10732:SF2	SUBFAMILY NOT NAMED	coord: 40..188 score: 2.9E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G005370	Cucsa.364550	Cucumber (Gy14) v1	cgycmoB0996
CmoCh15G005370	CmaCh04G025100	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G005370	Cla013684	Watermelon (97103) v1	cmowmB248
CmoCh15G005370	Csa6G046270	Cucumber (Chinese Long) v2	cmocuB297
CmoCh15G005370	MELO3C019907	Melon (DHL92) v3.5.1	cmomeB262
CmoCh15G005370	ClCG08G008370	Watermelon (Charleston Gray)	cmowcgB263
CmoCh15G005370	CSPI06G04060	Wild cucumber (PI 183967)	cmocpiB306
CmoCh15G005370	Lsi08G006370	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G005370	Cp4.1LG13g10560	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G005370	Cp4.1LG01g25020	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G005370	MELO3C019907.2	Melon (DHL92) v3.6.1	cmomedB297
CmoCh15G005370	CsaV3_6G004350	Cucumber (Chinese Long) v3	cmocucB0359
CmoCh15G005370	Cla97C08G151130	Watermelon (97103) v2	cmowmbB300
CmoCh15G005370	CsGy6G004030	Cucumber (Gy14) v2	cgybcmoB721
CmoCh15G005370	Carg15852	Silver-seed gourd	carcmoB0092
CmoCh15G005370	Carg01669	Silver-seed gourd	carcmoB1118

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G005370	CmoCh04G026270	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G005370	Wax gourd	cmowgoB0393
CmoCh15G005370	Cucurbita maxima (Rimu)	cmacmoB287