Cla97C08G151130 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G151130
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	40S ribosomal protein S17-3
Location	Cla97Chr08 : 19508653 .. 19509078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTACTACTCAAAAATGACATTGGATTTCCACACGAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTGCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATCAAGATTGACGAAATTAAGGTCGACAAAGAGACACTTGATATGCTTGCTGCTTTTGGTATGTCAGATATTCCTGGACTTGTGGAGGTCGAGCCACAGGCTATGATTCCGCCCCAAGCCTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

mRNA sequence

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTACTACTCAAAAATGACATTGGATTTCCACACGAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTGCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATCAAGATTGACGAAATTAAGGTCGACAAAGAGACACTTGATATGCTTGCTGCTTTTGGTATGTCAGATATTCCTGGACTTGTGGAGGTCGAGCCACAGGCTATGATTCCGCCCCAAGCCTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Coding sequence (CDS)

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAGGTACTACTCAAAAATGACATTGGATTTCCACACGAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCCTCAAAAAGGCTGCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATCAAGATTGACGAAATTAAGGTCGACAAAGAGACACTTGATATGCTTGCTGCTTTTGGTATGTCAGATATTCCTGGACTTGTGGAGGTCGAGCCACAGGCTATGATTCCGCCCCAAGCCTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMIPPQAFGRGAGGPRRY

Homology

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BLAST of Cla97C08G151130 vs. NCBI nr
Match: XP_008456611.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 3.1e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

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BLAST of Cla97C08G151130 vs. NCBI nr
Match: XP_004140911.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein Csa_6G046270 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 7.0e-70
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Cla97C08G151130 vs. NCBI nr
Match: XP_022134321.1 (40S ribosomal protein S17-4 [Momordica charantia])

HSP 1 Score: 269.2 bits (687), Expect = 7.7e-69
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGA GPRRY
Sbjct: 121 EPQAMIPPQAFGRGAVGPRRY 141

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BLAST of Cla97C08G151130 vs. NCBI nr
Match: XP_022961398.1 (40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal protein S17-4 [Cucurbita maxima] >XP_023523463.1 40S ribosomal protein S17-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 1.7e-68
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAM P QAFGRGAGGPRRY
Sbjct: 121 EPQAMAPLQAFGRGAGGPRRY 141

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BLAST of Cla97C08G151130 vs. NCBI nr
Match: XP_022939887.1 (40S ribosomal protein S17-3-like [Cucurbita moschata] >XP_023550932.1 40S ribosomal protein S17-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 1.1e-67
Identity = 138/141 (97.87%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAM  PQAFGRGAGGPRRY
Sbjct: 121 EPQAMNLPQAFGRGAGGPRRY 141

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BLAST of Cla97C08G151130 vs. TrEMBL
Match: tr|A0A1S3C4X5|A0A1S3C4X5_CUCME (40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.1e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

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BLAST of Cla97C08G151130 vs. TrEMBL
Match: tr|A0A0A0KB47|A0A0A0KB47_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046270 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 4.6e-70
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

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BLAST of Cla97C08G151130 vs. TrEMBL
Match: tr|A0A059BHN5|A0A059BHN5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02685 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 6.4e-64
Identity = 131/141 (92.91%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK +EIKVDKETLDMLA+ GMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKTNEIKVDKETLDMLASLGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ M+PPQAFGR  GGPRRY
Sbjct: 121 EPQVMMPPQAFGR--GGPRRY 139

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BLAST of Cla97C08G151130 vs. TrEMBL
Match: tr|A0A251JYK9|A0A251JYK9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G058900 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-63
Identity = 130/142 (91.55%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKG VRGISLKLQEEERERRMDFVP+ESAIKIDEIKVDKET+DMLAA GMSDIPGLVE 
Sbjct: 61  IQKGSVRGISLKLQEEERERRMDFVPEESAIKIDEIKVDKETIDMLAALGMSDIPGLVEF 120

Query: 121 EPQAMIPPQAFGRG-AGGPRRY 142
           EPQ ++PPQ FGRG AG PRR+
Sbjct: 121 EPQPLVPPQVFGRGPAGAPRRF 142

[Close]

BLAST of Cla97C08G151130 vs. TrEMBL
Match: tr|A0A2I4DGH4|A0A2I4DGH4_9ROSI (40S ribosomal protein S17-3-like OS=Juglans regia OX=51240 GN=LOC108979914 PE=3 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.9e-63
Identity = 133/144 (92.36%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETLDMLAA GMSDIPGLVE 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDIPGLVEA 120

Query: 121 EPQAMIPPQAFGR---GAGGPRRY 142
           E Q +IP Q FGR   GAGGPRRY
Sbjct: 121 ELQPVIPAQVFGRGAGGAGGPRRY 144

[Close]

BLAST of Cla97C08G151130 vs. Swiss-Prot
Match: sp|Q9LZ17|RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 231.1 bits (588), Expect = 7.6e-60
Identity = 124/142 (87.32%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Cla97C08G151130 vs. Swiss-Prot
Match: sp|P49215|RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 228.0 bits (580), Expect = 6.4e-59
Identity = 120/139 (86.33%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVE- 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKETLDML+A GMSD+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 -VEPQAMIPPQAFGRGAGG 138
             EPQA+    ++GRG GG
Sbjct: 121 AAEPQAVAALPSYGRGGGG 139

[Close]

BLAST of Cla97C08G151130 vs. Swiss-Prot
Match: sp|Q9SQZ1|RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 8.4e-59
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMIPPQAFGRGAGGPRR 141
           E Q  + P  FGR AG  +R
Sbjct: 121 ETQQAMAPAVFGRPAGRYQR 140

[Close]

BLAST of Cla97C08G151130 vs. Swiss-Prot
Match: sp|Q9SJ36|RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG  A  PRRY
Sbjct: 121 EPQQAMAPIAAFGGRA--PRRY 140

[Close]

BLAST of Cla97C08G151130 vs. Swiss-Prot
Match: sp|P49205|RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-58
Identity = 122/142 (85.92%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           +P QAM P  AFG G   PRRY
Sbjct: 121 DPQQAMAPIPAFG-GGRAPRRY 141

[Close]

BLAST of Cla97C08G151130 vs. TAIR10
Match: AT5G04800.1 (Ribosomal S17 family protein)

HSP 1 Score: 231.1 bits (588), Expect = 4.2e-61
Identity = 124/142 (87.32%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Cla97C08G151130 vs. TAIR10
Match: AT3G10610.1 (Ribosomal S17 family protein)

HSP 1 Score: 227.6 bits (579), Expect = 4.7e-60
Identity = 118/140 (84.29%), Postives = 128/140 (91.43%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMIPPQAFGRGAGGPRR 141
           E Q  + P  FGR AG  +R
Sbjct: 121 ETQQAMAPAVFGRPAGRYQR 140

[Close]

BLAST of Cla97C08G151130 vs. TAIR10
Match: AT2G05220.1 (Ribosomal S17 family protein)

HSP 1 Score: 226.5 bits (576), Expect = 1.0e-59
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG  A  PRRY
Sbjct: 121 EPQQAMAPIAAFGGRA--PRRY 140

[Close]

BLAST of Cla97C08G151130 vs. TAIR10
Match: AT2G04390.1 (Ribosomal S17 family protein)

HSP 1 Score: 226.1 bits (575), Expect = 1.4e-59
Identity = 122/142 (85.92%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           +P QAM P  AFG G   PRRY
Sbjct: 121 DPQQAMAPIPAFG-GGRAPRRY 141

The following BLAST results are available for this feature:

BLAST of Cla97C08G151130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456611.1	3.1e-70	100.00	PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo]	[more]
XP_004140911.1	7.0e-70	99.29	PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetica...	[more]
XP_022134321.1	7.7e-69	98.58	40S ribosomal protein S17-4 [Momordica charantia]	[more]
XP_022961398.1	1.7e-68	98.58	40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal p...	[more]
XP_022939887.1	1.1e-67	97.87	40S ribosomal protein S17-3-like [Cucurbita moschata] >XP_023550932.1 40S riboso...	[more]

BLAST of Cla97C08G151130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4X5\|A0A1S3C4X5_CUCME	2.1e-70	100.00	40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1	[more]
tr\|A0A0A0KB47\|A0A0A0KB47_CUCSA	4.6e-70	99.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046270 PE=3 SV=1	[more]
tr\|A0A059BHN5\|A0A059BHN5_EUCGR	6.4e-64	92.91	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02685 PE=3 SV...	[more]
tr\|A0A251JYK9\|A0A251JYK9_MANES	1.9e-63	91.55	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_10G058900 PE=3 SV=...	[more]
tr\|A0A2I4DGH4\|A0A2I4DGH4_9ROSI	1.9e-63	92.36	40S ribosomal protein S17-3-like OS=Juglans regia OX=51240 GN=LOC108979914 PE=3 ...	[more]

BLAST of Cla97C08G151130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZ17\|RS174_ARATH	7.6e-60	87.32	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
sp\|P49215\|RS17_SOLLC	6.4e-59	86.33	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
sp\|Q9SQZ1\|RS173_ARATH	8.4e-59	84.29	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]
sp\|Q9SJ36\|RS172_ARATH	1.9e-58	86.62	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
sp\|P49205\|RS171_ARATH	2.4e-58	85.92	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]

BLAST of Cla97C08G151130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04800.1	4.2e-61	87.32	Ribosomal S17 family protein	[more]
AT3G10610.1	4.7e-60	84.29	Ribosomal S17 family protein	[more]
AT2G05220.1	1.0e-59	86.62	Ribosomal S17 family protein	[more]
AT2G04390.1	1.4e-59	85.92	Ribosomal S17 family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018273	Ribosomal_S17e_CS
IPR036401	RPS17e-like_sf
IPR001210	Ribosomal_S17e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G151130.1	Cla97C08G151130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..116 e-value: 7.8E-58 score: 193.6
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..136
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.921
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	G3DSA:1.10.60.20		coord: 1..62 e-value: 1.7E-34 score: 119.2
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	SSF116820	Rps17e-like	coord: 1..62
None	No IPR available	PANTHER	PTHR10732:SF2	SUBFAMILY NOT NAMED	coord: 1..136
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G151130	Cla013684	Watermelon (97103) v1	wmwmbB100
Cla97C08G151130	Csa6G046270	Cucumber (Chinese Long) v2	cuwmbB488
Cla97C08G151130	MELO3C019907	Melon (DHL92) v3.5.1	mewmbB307
Cla97C08G151130	ClCG08G008370	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G151130	CSPI06G04060	Wild cucumber (PI 183967)	cpiwmbB514
Cla97C08G151130	Cucsa.364550	Cucumber (Gy14) v1	cgywmbB629
Cla97C08G151130	CmaCh04G025100	Cucurbita maxima (Rimu)	cmawmbB788
Cla97C08G151130	CmoCh04G026270	Cucurbita moschata (Rifu)	cmowmbB762
Cla97C08G151130	CmoCh15G005370	Cucurbita moschata (Rifu)	cmowmbB300
Cla97C08G151130	Lsi08G006370	Bottle gourd (USVL1VR-Ls)	lsiwmbB448
Cla97C08G151130	CsGy6G004030	Cucumber (Gy14) v2	cgybwmbB464
Cla97C08G151130	MELO3C019907.2	Melon (DHL92) v3.6.1	medwmbB295
Cla97C08G151130	Carg15852	Silver-seed gourd	carwmbB0064
Cla97C08G151130	Carg01669	Silver-seed gourd	carwmbB0864
Cla97C08G151130	CsaV3_6G004350	Cucumber (Chinese Long) v3	cucwmbB506

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G151130	Watermelon (97103) v2	wmbwmbB143
Cla97C08G151130	Cucurbita maxima (Rimu)	cmawmbB317
Cla97C08G151130	Wax gourd	wgowmbB329
Cla97C08G151130	Wax gourd	wgowmbB541