Carg15852 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15852
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	40S ribosomal protein S17
Location	Cucurbita_argyrosperma_scaffold_055 : 746506 .. 748325 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGTAGCCCGTCTCTTATATCTCTCCCTCTCTCGCATTAGGTTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGGTCTGTTCTTCTAACTGGATTTTGTAATTCTCTTCTTGATTTTCCTTTGTATATAATTGCATGTTCTGTTCACGTTGAGTTTTTCAGTTATCGAGTTTGTTGGATTCGTTCTTAGTTCTTCTCTTTCTGAAAATTTAATTAACCGTAGATTCATTCTGCTTCTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTTATCAGTAATTTTTTGAGAGGTTTTGTGAATCTGTTCAGTTGTTGATGAGAAAGAGAAGCATTTATCGCCATTGTTATGTTGCGGGCGTTTATTTTACTTTGGTTGCTATTCTGTGAATCATGACCCCTTTTAGATTTGGAGATGTTTGAGGTTATATGTTCTTTGTGATGATCAATGGATTTTAAGAAGCTTGTAGCTACCTGATGTTGGATGTACATTTTTCAAAAAATGTATGTCACAAGATGTTTATGCGTTTTCTGTTTTTATTTATCAATGTTGTCCTTAAGTTTTTCTTCCAAGTGCAGAGCAGGGTTGGAAAAATGAAAAGGAAATCAAGGTCTATTTGTAGTTCTTGTGTGTGGAAAAATACCACCTAAATTCAAAGGGTTTTGAACTGAGTGAATTGATTCTTGATCTAGCTTAAGACCATTAGGATGTGTGTTTAGGATTTTGTTGGACACTGTCAGATCTTTTTCTGGTTGAAAAAACTCGTGCAAACTAGGGTAGGCTGCTGATTCTCATTGTTTTTCCCAGGTAAAGTTCGGTAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTTGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGGTGGCCCGAGGAGATACTAAGGTAATCAAGGTTACGCCACTGCTTTTGGGAATTAGAAGTTTTTTGTTATTCAATATCTTAAGGCCATGGACATTCTTGTTGCTAGTTCTCTTCAGATTTGTCCTTAAATTTGGTACTTGTCTTTTTAGTTTTGACTTTGAGTGGATGTTCAAATCATTCTGGACATGGATGATGATACTTTTGTTTTAAGTATTGAATATTTCTGAAGTTAACATTTTGCTATTAGTCATACTTCACAGCTGCAATTTCACTCTTATAATTCACTTTGTTAGTTTGTTCTGTTCATCAGGCATTTCGTTCTATTGTTCGTGTGGGATTCGTTTGATAACGATTTTGTTTGGAGTGATTGGTCTTTTAATTCGTATTTAAACTTTCTTAATATATATTTTTTGGTAGGTTTCTACTGGTTTCTTCAAGTATTTAACCACAATTTCTAAACCTTTTACTTCTTTTGATTATTCCTTATGTTCTTTTTATCTCTACTTTTCAGTGAACAATTTGGTCAATTGGAAGTTA

mRNA sequence

AAGGTAGCCCGTCTCTTATATCTCTCCCTCTCTCGCATTAGGTTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTTGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGTGAACAATTTGGTCAATTGGAAGTTA

Coding sequence (CDS)

ATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTTGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGTGAACAATTTGGTCAATTGGAAGTTA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMAPLQAFGRGAVNNLVNWKL

Homology

[Close]

BLAST of Carg15852 vs. NCBI nr
Match: XP_022961398.1 (40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal protein S17-4 [Cucurbita maxima] >XP_023523463.1 40S ribosomal protein S17-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 6.2e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRGA 136
           EPQAMAPLQAFGRGA
Sbjct: 121 EPQAMAPLQAFGRGA 135

[Close]

BLAST of Carg15852 vs. NCBI nr
Match: XP_022134321.1 (40S ribosomal protein S17-4 [Momordica charantia])

HSP 1 Score: 255.4 bits (651), Expect = 1.2e-64
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRGAV 137
           EPQAM P QAFGRGAV
Sbjct: 121 EPQAMIPPQAFGRGAV 136

[Close]

BLAST of Carg15852 vs. NCBI nr
Match: XP_008456611.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo])

HSP 1 Score: 255.0 bits (650), Expect = 1.5e-64
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRGA 136
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]

BLAST of Carg15852 vs. NCBI nr
Match: XP_004140911.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein Csa_6G046270 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 3.4e-64
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRGA 136
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]

BLAST of Carg15852 vs. NCBI nr
Match: XP_022939887.1 (40S ribosomal protein S17-3-like [Cucurbita moschata] >XP_023550932.1 40S ribosomal protein S17-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.8 bits (634), Expect = 1.1e-62
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKI+EIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKINEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRGA 136
           EPQAM   QAFGRGA
Sbjct: 121 EPQAMNLPQAFGRGA 135

[Close]

BLAST of Carg15852 vs. TAIR10
Match: AT5G04800.1 (Ribosomal S17 family protein)

HSP 1 Score: 231.1 bits (588), Expect = 4.3e-61
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMAPLQAFGRG 135
           EP QAMAP+ AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]

BLAST of Carg15852 vs. TAIR10
Match: AT2G05220.1 (Ribosomal S17 family protein)

HSP 1 Score: 226.5 bits (576), Expect = 1.1e-59
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMAPLQAFG 133
           EP QAMAP+ AFG
Sbjct: 121 EPQQAMAPIAAFG 133

[Close]

BLAST of Carg15852 vs. TAIR10
Match: AT2G04390.1 (Ribosomal S17 family protein)

HSP 1 Score: 226.1 bits (575), Expect = 1.4e-59
Identity = 119/135 (88.15%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMAPLQAFGRG 135
           +P QAMAP+ AFG G
Sbjct: 121 DPQQAMAPIPAFGGG 135

[Close]

BLAST of Carg15852 vs. TAIR10
Match: AT3G10610.1 (Ribosomal S17 family protein)

HSP 1 Score: 222.6 bits (566), Expect = 1.5e-58
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 E-PQAMAPLQAFGRGA 136
           E  QAMAP   FGR A
Sbjct: 121 ETQQAMAP-AVFGRPA 135

[Close]

BLAST of Carg15852 vs. Swiss-Prot
Match: sp|Q9LZ17|RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 231.1 bits (588), Expect = 7.8e-60
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMAPLQAFGRG 135
           EP QAMAP+ AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]

BLAST of Carg15852 vs. Swiss-Prot
Match: sp|P49215|RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 228.8 bits (582), Expect = 3.9e-59
Identity = 120/136 (88.24%), Postives = 128/136 (94.12%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVE- 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKETLDML+A GMSD+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 -VEPQAMAPLQAFGRG 135
             EPQA+A L ++GRG
Sbjct: 121 AAEPQAVAALPSYGRG 136

[Close]

BLAST of Carg15852 vs. Swiss-Prot
Match: sp|Q9SJ36|RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMAPLQAFG 133
           EP QAMAP+ AFG
Sbjct: 121 EPQQAMAPIAAFG 133

[Close]

BLAST of Carg15852 vs. Swiss-Prot
Match: sp|P49205|RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 226.1 bits (575), Expect = 2.5e-58
Identity = 119/135 (88.15%), Postives = 126/135 (93.33%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMAPLQAFGRG 135
           +P QAMAP+ AFG G
Sbjct: 121 DPQQAMAPIPAFGGG 135

[Close]

BLAST of Carg15852 vs. Swiss-Prot
Match: sp|Q9SQZ1|RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 222.6 bits (566), Expect = 2.8e-57
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 E-PQAMAPLQAFGRGA 136
           E  QAMAP   FGR A
Sbjct: 121 ETQQAMAP-AVFGRPA 135

[Close]

BLAST of Carg15852 vs. TrEMBL
Match: tr|A0A1S3C4X5|A0A1S3C4X5_CUCME (40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.0e-64
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRGA 136
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]

BLAST of Carg15852 vs. TrEMBL
Match: tr|A0A0A0KB47|A0A0A0KB47_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046270 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.3e-64
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRGA 136
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]

BLAST of Carg15852 vs. TrEMBL
Match: tr|A9PA24|A9PA24_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G241200v3 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.0e-61
Identity = 125/134 (93.28%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI EIKVDKET+DMLAA GMSD+PGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIHEIKVDKETIDMLAALGMSDVPGLVEV 120

Query: 121 EPQAMAPLQAFGRG 135
           EPQ M P Q FGRG
Sbjct: 121 EPQPMLPTQGFGRG 134

[Close]

BLAST of Carg15852 vs. TrEMBL
Match: tr|A9PEJ6|A9PEJ6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G017300v3 PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 8.9e-61
Identity = 124/134 (92.54%), Postives = 127/134 (94.78%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI EIKVDKET+DMLAA GMSD PG+VEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIQEIKVDKETIDMLAALGMSDFPGIVEV 120

Query: 121 EPQAMAPLQAFGRG 135
           EPQ M P Q FGRG
Sbjct: 121 EPQPMVPTQGFGRG 134

[Close]

BLAST of Carg15852 vs. TrEMBL
Match: tr|A0A059BHN5|A0A059BHN5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02685 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 8.9e-61
Identity = 125/134 (93.28%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK +EIKVDKETLDMLA+ GMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKTNEIKVDKETLDMLASLGMSDIPGLVEV 120

Query: 121 EPQAMAPLQAFGRG 135
           EPQ M P QAFGRG
Sbjct: 121 EPQVMMPPQAFGRG 134

The following BLAST results are available for this feature:

BLAST of Carg15852 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961398.1	6.2e-66	100.00	40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal p...	[more]
XP_022134321.1	1.2e-64	97.79	40S ribosomal protein S17-4 [Momordica charantia]	[more]
XP_008456611.1	1.5e-64	98.52	PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo]	[more]
XP_004140911.1	3.4e-64	97.78	PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetica...	[more]
XP_022939887.1	1.1e-62	97.04	40S ribosomal protein S17-3-like [Cucurbita moschata] >XP_023550932.1 40S riboso...	[more]

BLAST of Carg15852 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04800.1	4.3e-61	89.63	Ribosomal S17 family protein	[more]
AT2G05220.1	1.1e-59	89.47	Ribosomal S17 family protein	[more]
AT2G04390.1	1.4e-59	88.15	Ribosomal S17 family protein	[more]
AT3G10610.1	1.5e-58	87.50	Ribosomal S17 family protein	[more]

BLAST of Carg15852 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LZ17\|RS174_ARATH	7.8e-60	89.63	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
sp\|P49215\|RS17_SOLLC	3.9e-59	88.24	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
sp\|Q9SJ36\|RS172_ARATH	1.9e-58	89.47	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
sp\|P49205\|RS171_ARATH	2.5e-58	88.15	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
sp\|Q9SQZ1\|RS173_ARATH	2.8e-57	87.50	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

BLAST of Carg15852 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C4X5\|A0A1S3C4X5_CUCME	1.0e-64	98.52	40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1	[more]
tr\|A0A0A0KB47\|A0A0A0KB47_CUCSA	2.3e-64	97.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046270 PE=3 SV=1	[more]
tr\|A9PA24\|A9PA24_POPTR	4.0e-61	93.28	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_010G241200v3 PE=...	[more]
tr\|A9PEJ6\|A9PEJ6_POPTR	8.9e-61	92.54	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_008G017300v3 PE=...	[more]
tr\|A0A059BHN5\|A0A059BHN5_EUCGR	8.9e-61	93.28	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02685 PE=3 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018273	Ribosomal_S17e_CS
IPR001210	Ribosomal_S17e
IPR036401	RPS17e-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15852-RA	Carg15852-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	G3DSA:1.10.60.20		coord: 1..62 e-value: 1.8E-34 score: 119.2
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	SSF116820	Rps17e-like	coord: 1..62
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..116 e-value: 4.0E-58 score: 194.6
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..133
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.921
None	No IPR available	PANTHER	PTHR10732:SF2	SUBFAMILY NOT NAMED	coord: 1..133
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15852	Cla013684	Watermelon (97103) v1	carwmB0065
Carg15852	Csa6G046270	Cucumber (Chinese Long) v2	carcuB0066
Carg15852	MELO3C019907	Melon (DHL92) v3.5.1	carmeB0065
Carg15852	ClCG08G008370	Watermelon (Charleston Gray)	carwcgB0067
Carg15852	CSPI06G04060	Wild cucumber (PI 183967)	carcpiB0070
Carg15852	Cucsa.364550	Cucumber (Gy14) v1	carcgyB0073
Carg15852	CmoCh04G026270	Cucurbita moschata (Rifu)	carcmoB0094
Carg15852	CmoCh15G005370	Cucurbita moschata (Rifu)	carcmoB0092
Carg15852	Lsi08G006370	Bottle gourd (USVL1VR-Ls)	carlsiB059
Carg15852	Cp4.1LG01g25020	Cucurbita pepo (Zucchini)	carcpeB0096
Carg15852	Cp4.1LG13g10560	Cucurbita pepo (Zucchini)	carcpeB0095
Carg15852	CsGy6G004030	Cucumber (Gy14) v2	carcgybB0066
Carg15852	MELO3C019907.2	Melon (DHL92) v3.6.1	carmedB0065
Carg15852	CsaV3_6G004350	Cucumber (Chinese Long) v3	carcucB0072
Carg15852	Cla97C08G151130	Watermelon (97103) v2	carwmbB0064

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15852	Carg01669	Silver-seed gourd	carcarB076

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15852	Cucurbita maxima (Rimu)	carcmaB0087
Carg15852	Cucurbita maxima (Rimu)	carcmaB0088
Carg15852	Wax gourd	carwgoB0076