CSPI06G04060 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G04060
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	40S ribosomal protein S17
Location	Chr6 : 3768187 .. 3769592 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGCAGCGGCAGCCACACCACACCTCACCTCACCGTACTCTTCCAAACCCTTTCCTTCCTTTCTTCAGGTCAGTTCTTTCTAGGGTTCTTAATTCTCTTTCCGATCGCCGCTCTTATCCAATTCTTTGTTCATTTTATTCTTTTGTTTTTATCATTTATCAAGTTTGTTTCATTCGTATCTCATGTTTTGGAGAATTGAATTGTAGATATACTGATTCTGCCTCATTCATTTTTCTACTTTAAGCCTTTGGGCTGTTTTTATGAGTTGTTTCTGATGATGAATGGCTCATTTACTTGTAGCTGTCTGGTGTTCACTCTATATTTTTCAATAATGTAGGTCATAAGTTTGTATGTTTCTCTAATTTTTTTTCTTCCAAGTGTATTTGTTGAATTGTATGTTGTTTTTTTCCTTGAGGATTTGCTATTACAGTGTATGGAAAAGTCTTTTTTTATTTTTATTTTTATGTAGATGTACGCTTCAAAGATCTGTGAATGTAGTGTAATCTATGTTAGATTTCTTGTTCTTATTTATTTACGGTTTTCTTCTTAGGTAAAGTTTGGTAGAAGATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAAGTACTACTCGAAAATGACACTGGATTTTCACACGAACAAGAAGATCTTGGAAGAGGTTGCAATCATCCCCTCCAAAAGGCTGCGAAACAAGATTGCTGGATTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTTCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATTAAGATTGACGAAATTAAGGTTGATAAGGAGACACTTGATATGCTTGCTGCTTTCGGCATGTCGGACATTCCTGGACTTGTGGAGGTTGAGCCACAAGCTATGATTCCTCCCCAAGCTTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAAGGTAAGGTAATTGAGACTGCTCAACAGCTTTTGGGAATTAGAAGTTTTTTGTTATTTAATATCATAAGGCCATGGATATTATTGTTGCTAGTTACTATCAGATTGGTCCTTAAATGTTTGACTTGTCTTTTTAGTTTTGATTTTGAATGGATGTTTAAATCATTTTGGACATGGATGATGATACTTTTGTTTTAAGTTTTGAAGATCTCTGAAGTAAACGTTTTTGGTATTAGTCAGATTTCACAATTGCCATTCCTTCTTTTAGTTCAGCTTCTTCTAATTTGGCTCTGTTTCAAGGCTTTTCTCTTGATAAACCATGTTGGGTGCATTATAATCTTTAGTTATAAGATTTCAATTCCTATCCCCCATGTGCGAAGTCACTACAATGATGATATGGGTTGTGATTTTTGGA

mRNA sequence

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAAGTACTACTCGAAAATGACACTGGATTTTCACACGAACAAGAAGATCTTGGAAGAGGTTGCAATCATCCCCTCCAAAAGGCTGCGAAACAAGATTGCTGGATTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTTCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATTAAGATTGACGAAATTAAGGTTGATAAGGAGACACTTGATATGCTTGCTGCTTTCGGCATGTCGGACATTCCTGGACTTGTGGAGGTTGAGCCACAAGCTATGATTCCTCCCCAAGCTTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Coding sequence (CDS)

ATGGGTCGTGTTAGAACCAAGACTGTGAAGAAGTCTTCACGCCAGGTGATTGAGAAGTACTACTCGAAAATGACACTGGATTTTCACACGAACAAGAAGATCTTGGAAGAGGTTGCAATCATCCCCTCCAAAAGGCTGCGAAACAAGATTGCTGGATTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTTCAAGAAGAAGAGCGTGAACGCCGTATGGACTTTGTCCCAGATGAATCAGCCATTAAGATTGACGAAATTAAGGTTGATAAGGAGACACTTGATATGCTTGCTGCTTTCGGCATGTCGGACATTCCTGGACTTGTGGAGGTTGAGCCACAAGCTATGATTCCTCCCCAAGCTTTTGGAAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Homology

[Close]

BLAST of CSPI06G04060 vs. Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 232.6 bits (592), Expect = 2.6e-60
Identity = 125/142 (88.03%), Postives = 129/142 (90.85%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of CSPI06G04060 vs. Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 229.2 bits (583), Expect = 2.9e-59
Identity = 119/140 (85.00%), Postives = 128/140 (91.43%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMIPPQAFGRGAGGPRR 141
           E Q  + P  FGR AG  +R
Sbjct: 121 ETQQAMAPAVFGRPAGRYQR 140

[Close]

BLAST of CSPI06G04060 vs. Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 228.0 bits (580), Expect = 6.4e-59
Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG  A  PRRY
Sbjct: 121 EPQQAMAPIAAFGGRA--PRRY 140

[Close]

BLAST of CSPI06G04060 vs. Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3)

HSP 1 Score: 227.6 bits (579), Expect = 8.3e-59
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           +P QAM P  AFG G   PRRY
Sbjct: 121 DPQQAMAPIPAFG-GGRAPRRY 141

[Close]

BLAST of CSPI06G04060 vs. Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 227.3 bits (578), Expect = 1.1e-58
Identity = 119/139 (85.61%), Postives = 128/139 (92.09%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVE- 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKETLDML+A GMSD+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 -VEPQAMIPPQAFGRGAGG 138
             EPQA+    ++GRG GG
Sbjct: 121 AAEPQAVAALPSYGRGGGG 139

[Close]

BLAST of CSPI06G04060 vs. TrEMBL
Match: A0A0A0KB47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046270 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 8.6e-71
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of CSPI06G04060 vs. TrEMBL
Match: A0A059BHN5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02685 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 6.0e-64
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK +EIKVDKETLDMLA+ GMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKTNEIKVDKETLDMLASLGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ M+PPQAFGR  GGPRRY
Sbjct: 121 EPQVMMPPQAFGR--GGPRRY 139

[Close]

BLAST of CSPI06G04060 vs. TrEMBL
Match: I3NMJ1_HEVBR (40S ribosomal protein S17B OS=Hevea brasiliensis GN=RPS17B PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.7e-63
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRN+IAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNRIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKIDEIKVDKET+DMLAA GMSDIPGLVE 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIDEIKVDKETIDMLAALGMSDIPGLVEF 120

Query: 121 EPQAMIPPQAFGRG-AGGPRR 141
           EPQ ++PPQ FGRG AG P R
Sbjct: 121 EPQPLVPPQVFGRGQAGAPGR 141

[Close]

BLAST of CSPI06G04060 vs. TrEMBL
Match: A9PEJ6_POPTR (40S ribosomal protein S17 OS=Populus trichocarpa GN=POPTR_0008s01820g PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.7e-63
Identity = 128/141 (90.78%), Postives = 133/141 (94.33%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI EIKVDKET+DMLAA GMSD PG+VEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIQEIKVDKETIDMLAALGMSDFPGIVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ M+P Q FGRG GG RRY
Sbjct: 121 EPQPMVPTQGFGRG-GGARRY 140

[Close]

BLAST of CSPI06G04060 vs. TrEMBL
Match: A9PA24_POPTR (40S ribosomal protein S17 OS=Populus trichocarpa GN=POPTR_0010s24760g PE=2 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI EIKVDKET+DMLAA GMSD+PGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIHEIKVDKETIDMLAALGMSDVPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ M+P Q FGRG GG RR+
Sbjct: 121 EPQPMLPTQGFGRG-GGARRF 140

[Close]

BLAST of CSPI06G04060 vs. TAIR10
Match: AT5G04800.1 (AT5G04800.1 Ribosomal S17 family protein)

HSP 1 Score: 232.6 bits (592), Expect = 1.5e-61
Identity = 125/142 (88.03%), Postives = 129/142 (90.85%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of CSPI06G04060 vs. TAIR10
Match: AT3G10610.1 (AT3G10610.1 Ribosomal S17 family protein)

HSP 1 Score: 229.2 bits (583), Expect = 1.6e-60
Identity = 119/140 (85.00%), Postives = 128/140 (91.43%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMIPPQAFGRGAGGPRR 141
           E Q  + P  FGR AG  +R
Sbjct: 121 ETQQAMAPAVFGRPAGRYQR 140

[Close]

BLAST of CSPI06G04060 vs. TAIR10
Match: AT2G05220.1 (AT2G05220.1 Ribosomal S17 family protein)

HSP 1 Score: 228.0 bits (580), Expect = 3.6e-60
Identity = 124/142 (87.32%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG  A  PRRY
Sbjct: 121 EPQQAMAPIAAFGGRA--PRRY 140

[Close]

BLAST of CSPI06G04060 vs. TAIR10
Match: AT2G04390.1 (AT2G04390.1 Ribosomal S17 family protein)

HSP 1 Score: 227.6 bits (579), Expect = 4.7e-60
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           +P QAM P  AFG G   PRRY
Sbjct: 121 DPQQAMAPIPAFG-GGRAPRRY 141

[Close]

BLAST of CSPI06G04060 vs. NCBI nr
Match: gi|449446303|ref|XP_004140911.1| (PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of CSPI06G04060 vs. NCBI nr
Match: gi|659113508|ref|XP_008456611.1| (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo])

HSP 1 Score: 273.1 bits (697), Expect = 2.8e-70
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of CSPI06G04060 vs. NCBI nr
Match: gi|702422741|ref|XP_010067125.1| (PREDICTED: 40S ribosomal protein S17-2 [Eucalyptus grandis])

HSP 1 Score: 251.5 bits (641), Expect = 8.6e-64
Identity = 130/141 (92.20%), Postives = 136/141 (96.45%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIK +EIKVDKETLDMLA+ GMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKTNEIKVDKETLDMLASLGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ M+PPQAFGR  GGPRRY
Sbjct: 121 EPQVMMPPQAFGR--GGPRRY 139

[Close]

BLAST of CSPI06G04060 vs. NCBI nr
Match: gi|224097574|ref|XP_002310992.1| (40S ribosomal protein S17 [Populus trichocarpa])

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-62
Identity = 128/141 (90.78%), Postives = 133/141 (94.33%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKI EIKVDKET+DMLAA GMSD PG+VEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIQEIKVDKETIDMLAALGMSDFPGIVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ M+P Q FGRG GG RRY
Sbjct: 121 EPQPMVPTQGFGRG-GGARRY 140

[Close]

BLAST of CSPI06G04060 vs. NCBI nr
Match: gi|313586435|gb|ADR71228.1| (40S ribosomal protein S17B [Hevea brasiliensis])

HSP 1 Score: 247.7 bits (631), Expect = 1.2e-62
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 1


Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRN+IAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNRIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVP+ESAIKIDEIKVDKET+DMLAA GMSDIPGLVE 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEESAIKIDEIKVDKETIDMLAALGMSDIPGLVEF 120

Query: 121 EPQAMIPPQAFGRG-AGGPRR 141
           EPQ ++PPQ FGRG AG P R
Sbjct: 121 EPQPLVPPQVFGRGQAGAPGR 141

The following BLAST results are available for this feature:

BLAST of CSPI06G04060 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS174_ARATH	2.6e-60	88.03	40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3	[more]
RS173_ARATH	2.9e-59	85.00	40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3	[more]
RS172_ARATH	6.4e-59	87.32	40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3	[more]
RS171_ARATH	8.3e-59	86.62	40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3	[more]
RS17_SOLLC	1.1e-58	85.61	40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3	[more]

BLAST of CSPI06G04060 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB47_CUCSA	8.6e-71	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046270 PE=3 SV=1	[more]
A0A059BHN5_EUCGR	6.0e-64	92.20	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02685 PE=3 SV=1	[more]
I3NMJ1_HEVBR	8.7e-63	90.78	40S ribosomal protein S17B OS=Hevea brasiliensis GN=RPS17B PE=2 SV=1	[more]
A9PEJ6_POPTR	8.7e-63	90.78	40S ribosomal protein S17 OS=Populus trichocarpa GN=POPTR_0008s01820g PE=2 SV=1	[more]
A9PA24_POPTR	1.1e-62	90.78	40S ribosomal protein S17 OS=Populus trichocarpa GN=POPTR_0010s24760g PE=2 SV=1	[more]

BLAST of CSPI06G04060 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04800.1	1.5e-61	88.03	Ribosomal S17 family protein	[more]
AT3G10610.1	1.6e-60	85.00	Ribosomal S17 family protein	[more]
AT2G05220.1	3.6e-60	87.32	Ribosomal S17 family protein	[more]
AT2G04390.1	4.7e-60	86.62	Ribosomal S17 family protein	[more]

BLAST of CSPI06G04060 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446303\|ref\|XP_004140911.1\|	1.2e-70	100.00	PREDICTED: 40S ribosomal protein S17-3 [Cucumis sativus]	[more]
gi\|659113508\|ref\|XP_008456611.1\|	2.8e-70	99.29	PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo]	[more]
gi\|702422741\|ref\|XP_010067125.1\|	8.6e-64	92.20	PREDICTED: 40S ribosomal protein S17-2 [Eucalyptus grandis]	[more]
gi\|224097574\|ref\|XP_002310992.1\|	1.2e-62	90.78	40S ribosomal protein S17 [Populus trichocarpa]	[more]
gi\|313586435\|gb\|ADR71228.1\|	1.2e-62	90.78	40S ribosomal protein S17B [Hevea brasiliensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001210	Ribosomal_S17e
IPR018273	Ribosomal_S17e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0000028	ribosomal small subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G04060.1	CSPI06G04060.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	GENE3D	G3DSA:1.10.60.20		coord: 1..62 score: 4.2
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 1
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..141 score: 1.1
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..116 score: 4.7
IPR001210	Ribosomal protein S17e	unknown	SSF116820	Rps17e-like	coord: 1..62 score: 1.07
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56 scor
None	No IPR available	PANTHER	PTHR10732:SF2	SUBFAMILY NOT NAMED	coord: 1..141 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G04060	Cla013684	Watermelon (97103) v1	cpiwmB472
CSPI06G04060	Csa6G046270	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G04060	MELO3C019907	Melon (DHL92) v3.5.1	cpimeB473
CSPI06G04060	ClCG08G008370	Watermelon (Charleston Gray)	cpiwcgB523
CSPI06G04060	Lsi08G006370	Bottle gourd (USVL1VR-Ls)	cpilsiB487
CSPI06G04060	MELO3C019907.2	Melon (DHL92) v3.6.1	cpimedB465
CSPI06G04060	CsaV3_6G004350	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G04060	Cla97C08G151130	Watermelon (97103) v2	cpiwmbB514
CSPI06G04060	Cucsa.364550	Cucumber (Gy14) v1	cgycpiB540
CSPI06G04060	CmaCh04G025100	Cucurbita maxima (Rimu)	cmacpiB778
CSPI06G04060	CmoCh15G005370	Cucurbita moschata (Rifu)	cmocpiB306
CSPI06G04060	CmoCh04G026270	Cucurbita moschata (Rifu)	cmocpiB769
CSPI06G04060	Cp4.1LG01g25020	Cucurbita pepo (Zucchini)	cpecpiB460
CSPI06G04060	Cp4.1LG13g10560	Cucurbita pepo (Zucchini)	cpecpiB198
CSPI06G04060	CsGy6G004030	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G04060	Carg01669	Silver-seed gourd	carcpiB0870
CSPI06G04060	Carg15852	Silver-seed gourd	carcpiB0070

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G04060	Wax gourd	cpiwgoB593
CSPI06G04060	Cucurbita maxima (Rimu)	cmacpiB315