CmoCh13G004180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G004180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Acyl carrier protein
Location	Cmo_Chr13 : 5197415 .. 5200081 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAATCAGGGGACTCCTGGTTTATGTATAGCATCCAAGGGACCCATTAAGGATCCTTTGTATGTCATATGGGTTTGATGACCAAGAAAAAGGAACTAACAGCAGCTGGAAAACAATCCTTTCTGTTGATTCTGCTTGAACGGGGTTAGGAACCCATTCCCATCGGTGTGGTTTACATATGTTAGGTGTTAAAATGTTGATTAGTGCTTGATATAGTTATTACTTAGCAGCTAGGAACATCTTGGGGCTAATAAACGGGGTTAGGAACCCATCGGGATGACCCTATAACAGTGGACGAAATACATGACTCAATGAGGACTGAACAACTTGTCATTTTCTACAGATCTAGGACATGGACACTGTGTAGAGGTAACTAAAATATGTTTCTTTGATATATTCAAATACTTCTCTGCAGATTATTGGTTTGCTATTTTGAATTTAGGGTATGAGATAGATTTTGAAAGGATTAAAATCATTTTTGTCGTATTTAAATTCACTATGAAACCTTACTTTAATCATTCAAAATCAACGTTTAATTTTACACTTTTGAAACTGATTTCCATATGATCAAAATTGAATTTCAAGGAAAACATGTTTTGGGGTGATTTGAAACGTGACAATCTCAAACATGCACTTAATATACAAGACATGATGGACGAAGACAAAATTTAAGACTTTTTAGAGAAGTTAGTGGTACTAGCAAATTTTTAATAATACAATGCATTATAACAACTATTTTGAAGCAAATCCGAAATGAAATATACGTTTCCTTCAATGGTTTTGGAAAGCCAAGTTTTAAATAGTCTTAAATGGTCCTTGGCATTGTCACTTTGTTAGTGCTTTAGTTAAAAAGTTGCCCGCAGTAAGTGTTTACATGGCTATGATTACGTAGCTTTTTAAATCATTTTTTAATAATACTTTTGCTTATCTAGTAGCACAAACTATTTGCTGCCTTTAAGTTCGTTTCTTTGTCCATTTCGTACTATGTTATTGACTTTTGAAGTAACTCGTCTCTCCTCGAGGATGTCACGACCCCTTGAACTTTGTACATTAATCTCAACTTTATGATTATATTCTTGTTTATTATTATGAACAAAATATCATTTGTTATAATGTTTTTTGGCCTACAAAGTGATGTTTAGTGTAGGAAGTTACGCCAATTTATTTTCATAACCTCCAAACTTTTCACTTATGCCCTCTGTTTTCATTTCCTTTATTTATCATTTTTTTTTTCATTTTGGTTGGTGACTTCCTGTTTCTGTACCAGTTTTTTTATGAATTGGAATTGTTTCTTGTGGATTTAGCTCAGATGGTGATGCATATCTACTTAGACATGCCCTTAAATTTCTTGATTTGGCCAACAAAATTGATGTAAAGCTGTTTATAGAGCTTGGTATTTTTGAGTTTTCTGGTGCAAACATAGACGTTATAGCATAGCATTTTCCTAATCAAATTCATCCCCCCCCGGCACGCCCACGCCCACGCCCACGCCCACCACGTGCACTTTCTAGCAAATATTGTGTTTTATGTATTTTCTTTCTAGGACTCTTATAACGGTCAAAGTCTACTGCTAGCAGATATTGTTCTATTTGGGCTTCCTCTTTCGAGTTTCCCCTCAAGGTTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACATCCTTAAAATGAATGTTTCGTTCCTCACTCCAACCAATGTGGGATCTCACAATCCACCCTCTTGGGGCCCAGTGTCCTTGCTGACACACCGCCCGAGGACTAACTCTGATATCATTTGTAACAGTCCAAGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACACGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTTCCCTCTCCAATCGATGTGGGATCTCACAACTCTGATAATGTGTTTCAAGGGTTCTTGAAGTTGTAGGTTTGAGAAAAGTTAGATCTTGATAACTTAACATGCACGTGCAAAATTTATTTGTTGAACTCCCTTCATACACCGAGGATATTTCACATTTCAGACTTCGATAATTTGTATTTCTATCTATGATACCGGAACTTGTCAATCCTTTGTTAACTGTACTGTAATGGAATTTGTTAATTTCAGCTCGTGTAAACATGCAAAGCATCAGATATTCAATCCTGAAGCACATGAAGATCAGAGTACCTAATACTACAACACAGTTGTTGATAAAGGATGAGAATATAATGGACAAGCTAAGTCGCCATTTGTGCACATCAACAGATACAAGCTCCGACGAAATAGTTGATCGAGTGATTGGATTGGTTAAGAAGTTCGATAGAATTGATGCCTGTAAGGTAATTATCTGGGATCGATCACCTATCATCTCGTCTTTGAATTTTTATATCACTTGCCAGGATTTTTGTAGATTCACACCTAATTATCATATGCTATTGAAACGACTGAGCAGGTTACTGAAACCGCTGATTTTCAGAAGGACTTAAGCCTGGACAGCTTGGACAGGGTGGAGCTTGTTATGGCTTTTGAACAAGAATTCTCCATTGAAATCCCAGATGAAAAGGCAGATAAGCTTACCTGCTGTGCCGATGTAGCACGATACATAGCTTCTCAAGTAGAGGAAAATAAAGAGGAGAAACACTGA

mRNA sequence

AGTAATCAGGGGACTCCTGGTTTATGTATAGCATCCAAGGGACCCATTAAGGATCCTTTGTATGTCATATGGGTTTGATGACCAAGAAAAAGGAACTAACAGCAGCTGGAAAACAATCCTTTCTGTTGATTCTGCTTGAACGGGGTTAGGAACCCATTCCCATCGGTGTGGTTTACATATGTTAGGTGTTAAAATGTTGATTAGTGCTTGATATAGTTATTACTTAGCAGCTAGGAACATCTTGGGGCTAATAAACGGGGTTAGGAACCCATCGGGATGACCCTATAACAGTGGACGAAATACATGACTCAATGAGGACTGAACAACTTGTCATTTTCTACAGATCTAGGACATGGACACTGTGTAGAGCTCGTGTAAACATGCAAAGCATCAGATATTCAATCCTGAAGCACATGAAGATCAGAGTACCTAATACTACAACACAGTTGTTGATAAAGGATGAGAATATAATGGACAAGCTAAGTCGCCATTTGTGCACATCAACAGATACAAGCTCCGACGAAATAGTTGATCGAGTGATTGGATTGGTTAAGAAGTTCGATAGAATTGATGCCTGTAAGGTTACTGAAACCGCTGATTTTCAGAAGGACTTAAGCCTGGACAGCTTGGACAGGGTGGAGCTTGTTATGGCTTTTGAACAAGAATTCTCCATTGAAATCCCAGATGAAAAGGCAGATAAGCTTACCTGCTGTGCCGATGTAGCACGATACATAGCTTCTCAAGTAGAGGAAAATAAAGAGGAGAAACACTGA

Coding sequence (CDS)

ATGAGGACTGAACAACTTGTCATTTTCTACAGATCTAGGACATGGACACTGTGTAGAGCTCGTGTAAACATGCAAAGCATCAGATATTCAATCCTGAAGCACATGAAGATCAGAGTACCTAATACTACAACACAGTTGTTGATAAAGGATGAGAATATAATGGACAAGCTAAGTCGCCATTTGTGCACATCAACAGATACAAGCTCCGACGAAATAGTTGATCGAGTGATTGGATTGGTTAAGAAGTTCGATAGAATTGATGCCTGTAAGGTTACTGAAACCGCTGATTTTCAGAAGGACTTAAGCCTGGACAGCTTGGACAGGGTGGAGCTTGTTATGGCTTTTGAACAAGAATTCTCCATTGAAATCCCAGATGAAAAGGCAGATAAGCTTACCTGCTGTGCCGATGTAGCACGATACATAGCTTCTCAAGTAGAGGAAAATAAAGAGGAGAAACACTGA

Homology

[Close]

BLAST of CmoCh13G004180 vs. Swiss-Prot
Match: ACPM3_ARATH (Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-28
Identity = 73/131 (55.73%), Postives = 89/131 (67.94%), Query Frame = 1


Query: 24  MQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTS---TDTSSDEIVDRVIGLV 83
           M  IR SIL+H+++RV    T LL ++EN    +     TS    D   D+I+ RVI LV
Sbjct: 1   MHCIRSSILQHLRLRVSVRPTSLL-QNENGFKSIGIFNFTSEAAADGGQDQILSRVIELV 60

Query: 84  KKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARY 143
           KK+D+ +  +VTE ADFQKDLSLDSLD+ ELVMA E+EFSIEIPDEKADKLTCC DVA Y
Sbjct: 61  KKYDKTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKADKLTCCGDVATY 120

Query: 144 IASQVEENKEE 152
           I S+      E
Sbjct: 121 ILSETPTKASE 130

[Close]

BLAST of CmoCh13G004180 vs. Swiss-Prot
Match: ACPM1_ARATH (Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.5e-16
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 26  SIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGLVKKFDR 85
           ++R +IL+H+  RVP  T  L       +  +          S + +VDRV+ +VK F +
Sbjct: 2   ALRNAILRHL--RVPVQTLGLNQSKIGFLGTIRSFSSHDDHLSREAVVDRVLDVVKSFPK 61

Query: 86  IDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYI 142
           +D  KVT    FQ DL LDSLD VE+VMA E+EF +EIPD++ADK+  C+    Y+
Sbjct: 62  VDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYV 115

[Close]

BLAST of CmoCh13G004180 vs. Swiss-Prot
Match: ACPM2_ARATH (Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-14
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 71  EIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADK 130
           E+ DRV+ +VK F ++D  KVT  A+FQ DL LDSLD VE+VMA E+EF  EIPD +ADK
Sbjct: 49  EVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADK 108

Query: 131 LTCCADVARYIAS 144
           +        +IAS
Sbjct: 109 IQSIDLAVDFIAS 121

[Close]

BLAST of CmoCh13G004180 vs. Swiss-Prot
Match: ACPM_DICDI (Acyl carrier protein, mitochondrial OS=Dictyostelium discoideum GN=ndufab1 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.7e-14
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 68  SSDEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEK 127
           S  EI DRVIG+V ++D++    VT T  F K+L LDSLD  ++++A E+EF IEIPDE+
Sbjct: 41  SEKEITDRVIGVVSQYDKVSGKTVTPTTTF-KELGLDSLDSADILVAVEEEFGIEIPDEE 100

Query: 128 ADKLTCCADVARYI 142
           ADK+T CA+   Y+
Sbjct: 101 ADKITSCAETISYL 113

[Close]

BLAST of CmoCh13G004180 vs. Swiss-Prot
Match: ACPM_MOUSE (Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-13
Identity = 39/88 (44.32%), Postives = 56/88 (63.64%), Query Frame = 1


Query: 57  LSRHLCTSTDTSSDEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFE 116
           L R    +   + D I DRV+ ++K +D+ID  K++  + F KDL LDSLD+VE++MA E
Sbjct: 64  LCRQYSDAPPLTLDGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAME 123

Query: 117 QEFSIEIPDEKADKLTCCADVARYIASQ 145
            EF  EIPD  A+KL C  ++  YIA +
Sbjct: 124 DEFGFEIPDIDAEKLMCPQEIVDYIADK 151

[Close]

BLAST of CmoCh13G004180 vs. TrEMBL
Match: A0A0A0LVR9_CUCSA (Acyl carrier protein OS=Cucumis sativus GN=Csa_1G181370 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 1


Query: 20  ARVNMQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGL 79
           A  NMQSIR SILKHMKIR PN TT+ L+KDEN+++KL+R LC ST  SS+EI DRVIGL
Sbjct: 110 APANMQSIRNSILKHMKIRGPNNTTKQLMKDENVIEKLTRCLCASTGRSSNEIADRVIGL 169

Query: 80  VKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVAR 139
           VKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSI+IP+E+ADKLTCCADVAR
Sbjct: 170 VKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIDIPEEQADKLTCCADVAR 229

Query: 140 YIASQVEENKEEK 153
           YI SQVEE KEEK
Sbjct: 230 YITSQVEEKKEEK 242

[Close]

BLAST of CmoCh13G004180 vs. TrEMBL
Match: V4ULG8_9ROSI (Acyl carrier protein OS=Citrus clementina GN=CICLE_v10017003mg PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-37
Identity = 86/140 (61.43%), Postives = 109/140 (77.86%), Query Frame = 1


Query: 12  SRTWTLCRARVNMQSIRYSILKHMKIRVPNTT--TQLLIKDENIMDKLSRHLCTSTDTSS 71
           SR   +C A +NMQ+I+ +IL+++++R  N T  +       N++ +LSR +C ST  + 
Sbjct: 25  SRNHCICIATLNMQNIKETILRYVRVRGFNETYWSYTGTGSRNVLKQLSRQMCASTSANP 84

Query: 72  DEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKAD 131
           DEI+ RVI LVKKFD+ DA KVTETADFQKDLSLDSLDRVELVMAFE+EFS+EIP+EKAD
Sbjct: 85  DEIMHRVIALVKKFDKTDAHKVTETADFQKDLSLDSLDRVELVMAFEEEFSVEIPEEKAD 144

Query: 132 KLTCCADVARYIASQVEENK 150
           KLTCCADVARYIAS+  E +
Sbjct: 145 KLTCCADVARYIASEAREKE 164

[Close]

BLAST of CmoCh13G004180 vs. TrEMBL
Match: M5WHZ2_PRUPE (Acyl carrier protein OS=Prunus persica GN=PRUPE_ppa013362mg PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.9e-37
Identity = 87/125 (69.60%), Postives = 104/125 (83.20%), Query Frame = 1


Query: 24  MQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSS-DEIVDRVIGLVKK 83
           MQSIR SIL H+++   +    LL +  N++  LSRH+C +T T+S D+I+DRVIGLVKK
Sbjct: 1   MQSIRNSILWHVRVG-SSAEKWLLTERGNVLKSLSRHMCAATGTTSTDQIMDRVIGLVKK 60

Query: 84  FDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYIA 143
           FD+IDA KVTETADFQKDL+LDSLDRVELVMAFE+EFSIEIP+EKADKLTCCADVARYI 
Sbjct: 61  FDKIDASKVTETADFQKDLNLDSLDRVELVMAFEEEFSIEIPEEKADKLTCCADVARYIV 120

Query: 144 SQVEE 148
           S  E+
Sbjct: 121 SGAEQ 124

[Close]

BLAST of CmoCh13G004180 vs. TrEMBL
Match: A0A067KUH7_JATCU (Acyl carrier protein OS=Jatropha curcas GN=JCGZ_08947 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 6.7e-37
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 1


Query: 23  NMQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGLVKK 82
           NMQSIR SIL H+++R      QLL +  NI  +L +  C  +  S D+I+D+V+GLVKK
Sbjct: 23  NMQSIRNSILSHVRLR-SFADQQLLAQRRNIFKQLLQQFCALSGPSPDQIMDQVVGLVKK 82

Query: 83  FDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYIA 142
           FD+IDA KVTETADFQKDL LDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVA+YI 
Sbjct: 83  FDKIDATKVTETADFQKDLCLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVAKYIV 142

Query: 143 SQVEE 148
           S VE+
Sbjct: 143 SGVEQ 146

[Close]

BLAST of CmoCh13G004180 vs. TrEMBL
Match: B9HCD1_POPTR (Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0006s00750g PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-36
Identity = 85/121 (70.25%), Postives = 98/121 (80.99%), Query Frame = 1


Query: 24  MQSIRYSILKHMKIRVPNTTTQLLIKDE-NIMDKLSRHLCTSTDTSSDEIVDRVIGLVKK 83
           MQSIR SIL H+++R   +  Q L     N+  +L R +CTS  TS D+I+DRVIGLVKK
Sbjct: 1   MQSIRNSILSHIRLR--GSAEQFLFAQRGNVFKQLHRQMCTSVGTSPDKIMDRVIGLVKK 60

Query: 84  FDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYIA 143
           FD+IDA KVTETADFQKDL LDSLDRVELVMAFE+EFSIEIP+EKADKLTCCADVA+YI 
Sbjct: 61  FDKIDATKVTETADFQKDLCLDSLDRVELVMAFEEEFSIEIPEEKADKLTCCADVAKYIV 119

[Close]

BLAST of CmoCh13G004180 vs. TAIR10
Match: AT5G47630.1 (AT5G47630.1 mitochondrial acyl carrier protein 3)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 73/131 (55.73%), Postives = 89/131 (67.94%), Query Frame = 1


Query: 24  MQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTS---TDTSSDEIVDRVIGLV 83
           M  IR SIL+H+++RV    T LL ++EN    +     TS    D   D+I+ RVI LV
Sbjct: 1   MHCIRSSILQHLRLRVSVRPTSLL-QNENGFKSIGIFNFTSEAAADGGQDQILSRVIELV 60

Query: 84  KKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARY 143
           KK+D+ +  +VTE ADFQKDLSLDSLD+ ELVMA E+EFSIEIPDEKADKLTCC DVA Y
Sbjct: 61  KKYDKTNTSEVTERADFQKDLSLDSLDKTELVMAIEEEFSIEIPDEKADKLTCCGDVATY 120

Query: 144 IASQVEENKEE 152
           I S+      E
Sbjct: 121 ILSETPTKASE 130

[Close]

BLAST of CmoCh13G004180 vs. TAIR10
Match: AT2G44620.1 (AT2G44620.1 mitochondrial acyl carrier protein 1)

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-17
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 26  SIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGLVKKFDR 85
           ++R +IL+H+  RVP  T  L       +  +          S + +VDRV+ +VK F +
Sbjct: 2   ALRNAILRHL--RVPVQTLGLNQSKIGFLGTIRSFSSHDDHLSREAVVDRVLDVVKSFPK 61

Query: 86  IDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYI 142
           +D  KVT    FQ DL LDSLD VE+VMA E+EF +EIPD++ADK+  C+    Y+
Sbjct: 62  VDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYV 115

[Close]

BLAST of CmoCh13G004180 vs. TAIR10
Match: AT1G65290.1 (AT1G65290.1 mitochondrial acyl carrier protein 2)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-15
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 71  EIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADK 130
           E+ DRV+ +VK F ++D  KVT  A+FQ DL LDSLD VE+VMA E+EF  EIPD +ADK
Sbjct: 49  EVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVVMALEEEFGFEIPDNEADK 108

Query: 131 LTCCADVARYIAS 144
           +        +IAS
Sbjct: 109 IQSIDLAVDFIAS 121

[Close]

BLAST of CmoCh13G004180 vs. TAIR10
Match: AT3G05020.1 (AT3G05020.1 acyl carrier protein 1)

HSP 1 Score: 50.8 bits (120), Expect = 8.5e-07
Identity = 32/92 (34.78%), Postives = 46/92 (50.00%), Query Frame = 1


Query: 58  SRHLCTSTDTSSDEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQ 117
           SR L  S   +  E +++V  +VKK   +   K         DL  DSLD VE+VM  E+
Sbjct: 47  SRRLSVSC-AAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEE 106

Query: 118 EFSIEIPDEKADKLTCCADVARYIASQVEENK 150
           EF+I++ +EKA K+      A  I   + E K
Sbjct: 107 EFNIQMAEEKAQKIATVEQAAELIEELINEKK 137

[Close]

BLAST of CmoCh13G004180 vs. NCBI nr
Match: gi|778659715|ref|XP_011654909.1| (PREDICTED: acyl carrier protein 3, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-52
Identity = 110/134 (82.09%), Postives = 121/134 (90.30%), Query Frame = 1


Query: 19  RARVNMQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIG 78
           +A  NMQSIR SILKHMKIR PN TT+ L+KDEN+++KL+R LC ST  SS+EI DRVIG
Sbjct: 4   KAPANMQSIRNSILKHMKIRGPNNTTKQLMKDENVIEKLTRCLCASTGRSSNEIADRVIG 63

Query: 79  LVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVA 138
           LVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSI+IP+E+ADKLTCCADVA
Sbjct: 64  LVKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIDIPEEQADKLTCCADVA 123

Query: 139 RYIASQVEENKEEK 153
           RYI SQVEE KEEK
Sbjct: 124 RYITSQVEEKKEEK 137

[Close]

BLAST of CmoCh13G004180 vs. NCBI nr
Match: gi|700209928|gb|KGN65024.1| (hypothetical protein Csa_1G181370 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 3.7e-52
Identity = 110/133 (82.71%), Postives = 120/133 (90.23%), Query Frame = 1


Query: 20  ARVNMQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGL 79
           A  NMQSIR SILKHMKIR PN TT+ L+KDEN+++KL+R LC ST  SS+EI DRVIGL
Sbjct: 110 APANMQSIRNSILKHMKIRGPNNTTKQLMKDENVIEKLTRCLCASTGRSSNEIADRVIGL 169

Query: 80  VKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVAR 139
           VKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSI+IP+E+ADKLTCCADVAR
Sbjct: 170 VKKFDRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIDIPEEQADKLTCCADVAR 229

Query: 140 YIASQVEENKEEK 153
           YI SQVEE KEEK
Sbjct: 230 YITSQVEEKKEEK 242

[Close]

BLAST of CmoCh13G004180 vs. NCBI nr
Match: gi|659127239|ref|XP_008463599.1| (PREDICTED: acyl carrier protein 3, mitochondrial [Cucumis melo])

HSP 1 Score: 211.1 bits (536), Expect = 1.4e-51
Identity = 109/129 (84.50%), Postives = 119/129 (92.25%), Query Frame = 1


Query: 24  MQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGLVKKF 83
           MQSIR SILKHMKIR PN TT+ L+KDEN+++KL+R LCTST  SS+EI DRVIGLVKKF
Sbjct: 1   MQSIRNSILKHMKIRGPNNTTKQLMKDENVIEKLTRCLCTSTGRSSNEIADRVIGLVKKF 60

Query: 84  DRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYIAS 143
           DRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDE+ADKLTCCA+VARYI S
Sbjct: 61  DRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEQADKLTCCANVARYITS 120

Query: 144 QVEENKEEK 153
           QVE+ KEEK
Sbjct: 121 QVEKKKEEK 129

[Close]

BLAST of CmoCh13G004180 vs. NCBI nr
Match: gi|449443526|ref|XP_004139528.1| (PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 3.1e-51
Identity = 108/129 (83.72%), Postives = 118/129 (91.47%), Query Frame = 1


Query: 24  MQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGLVKKF 83
           MQSIR SILKHMKIR PN TT+ L+KDEN+++KL+R LC ST  SS+EI DRVIGLVKKF
Sbjct: 1   MQSIRNSILKHMKIRGPNNTTKQLMKDENVIEKLTRCLCASTGRSSNEIADRVIGLVKKF 60

Query: 84  DRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYIAS 143
           DRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSI+IP+E+ADKLTCCADVARYI S
Sbjct: 61  DRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIDIPEEQADKLTCCADVARYITS 120

Query: 144 QVEENKEEK 153
           QVEE KEEK
Sbjct: 121 QVEEKKEEK 129

[Close]

BLAST of CmoCh13G004180 vs. NCBI nr
Match: gi|470114395|ref|XP_004293400.1| (PREDICTED: acyl carrier protein 3, mitochondrial [Fragaria vesca subsp. vesca])

HSP 1 Score: 165.6 bits (418), Expect = 6.7e-38
Identity = 86/124 (69.35%), Postives = 102/124 (82.26%), Query Frame = 1


Query: 24  MQSIRYSILKHMKIRVPNTTTQLLIKDENIMDKLSRHLCTSTDTSSDEIVDRVIGLVKKF 83
           MQSIR SIL H++I     T        N +  LSRHLC ST T++D+++DRV+GLVKKF
Sbjct: 1   MQSIRNSILCHVRIGTSPQTG-------NALRSLSRHLCASTSTNTDQVLDRVVGLVKKF 60

Query: 84  DRIDACKVTETADFQKDLSLDSLDRVELVMAFEQEFSIEIPDEKADKLTCCADVARYIAS 143
           D+ID+ KVTETADFQKDLSLDSLDRVELVMAFE+EFSIEIP+EKADKLTCCADVARYIAS
Sbjct: 61  DKIDSSKVTETADFQKDLSLDSLDRVELVMAFEEEFSIEIPEEKADKLTCCADVARYIAS 117

Query: 144 QVEE 148
           + ++
Sbjct: 121 EADQ 117

The following BLAST results are available for this feature:

BLAST of CmoCh13G004180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ACPM3_ARATH	2.2e-28	55.73	Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=2 SV=...	[more]
ACPM1_ARATH	5.5e-16	40.52	Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana GN=MTACP1 PE=2 SV=...	[more]
ACPM2_ARATH	4.0e-14	53.42	Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=MTACP2 PE=1 SV=...	[more]
ACPM_DICDI	6.7e-14	51.35	Acyl carrier protein, mitochondrial OS=Dictyostelium discoideum GN=ndufab1 PE=3 ...	[more]
ACPM_MOUSE	3.3e-13	44.32	Acyl carrier protein, mitochondrial OS=Mus musculus GN=Ndufab1 PE=1 SV=1	[more]

BLAST of CmoCh13G004180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVR9_CUCSA	2.5e-52	82.71	Acyl carrier protein OS=Cucumis sativus GN=Csa_1G181370 PE=3 SV=1	[more]
V4ULG8_9ROSI	1.4e-37	61.43	Acyl carrier protein OS=Citrus clementina GN=CICLE_v10017003mg PE=3 SV=1	[more]
M5WHZ2_PRUPE	3.9e-37	69.60	Acyl carrier protein OS=Prunus persica GN=PRUPE_ppa013362mg PE=3 SV=1	[more]
A0A067KUH7_JATCU	6.7e-37	68.80	Acyl carrier protein OS=Jatropha curcas GN=JCGZ_08947 PE=3 SV=1	[more]
B9HCD1_POPTR	2.6e-36	70.25	Acyl carrier protein OS=Populus trichocarpa GN=POPTR_0006s00750g PE=3 SV=1	[more]

BLAST of CmoCh13G004180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G47630.1	1.2e-29	55.73	mitochondrial acyl carrier protein 3	[more]
AT2G44620.1	3.1e-17	40.52	mitochondrial acyl carrier protein 1	[more]
AT1G65290.1	2.2e-15	53.42	mitochondrial acyl carrier protein 2	[more]
AT3G05020.1	8.5e-07	34.78	acyl carrier protein 1	[more]

BLAST of CmoCh13G004180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778659715\|ref\|XP_011654909.1\|	2.1e-52	82.09	PREDICTED: acyl carrier protein 3, mitochondrial isoform X1 [Cucumis sativus]	[more]
gi\|700209928\|gb\|KGN65024.1\|	3.7e-52	82.71	hypothetical protein Csa_1G181370 [Cucumis sativus]	[more]
gi\|659127239\|ref\|XP_008463599.1\|	1.4e-51	84.50	PREDICTED: acyl carrier protein 3, mitochondrial [Cucumis melo]	[more]
gi\|449443526\|ref\|XP_004139528.1\|	3.1e-51	83.72	PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Cucumis sativus]	[more]
gi\|470114395\|ref\|XP_004293400.1\|	6.7e-38	69.35	PREDICTED: acyl carrier protein 3, mitochondrial [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003231	Acyl_carrier
IPR009081	PP-bd_ACP

Vocabulary: **Biological Process**
Term	Definition
GO:0006633	fatty acid biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0009245	lipid A biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0000036	ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process
molecular_function	GO:0000035	acyl binding
molecular_function	GO:0031177	phosphopantetheine binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004180.1	CmoCh13G004180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003231	Acyl carrier protein (ACP)	PRODOM	PD000887		coord: 104..143 score: 1.0
IPR003231	Acyl carrier protein (ACP)	HAMAP	MF_01217	Acyl_carrier	coord: 71..145 score: 16
IPR003231	Acyl carrier protein (ACP)	TIGRFAMs	TIGR00517	TIGR00517	coord: 70..144 score: 1.2
IPR009081	Phosphopantetheine binding ACP domain	GENE3D	G3DSA:1.10.1200.10		coord: 60..149 score: 4.6
IPR009081	Phosphopantetheine binding ACP domain	PFAM	PF00550	PP-binding	coord: 74..141 score: 1.
IPR009081	Phosphopantetheine binding ACP domain	PROFILE	PS50075	ACP_DOMAIN	coord: 65..142 score: 12
IPR009081	Phosphopantetheine binding ACP domain	unknown	SSF47336	ACP-like	coord: 68..148 score: 1.83
None	No IPR available	PANTHER	PTHR20863	ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATED	coord: 21..150 score: 1.8
None	No IPR available	PANTHER	PTHR20863:SF32	ACYL CARRIER PROTEIN 3, MITOCHONDRIAL	coord: 21..150 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G004180	Cucsa.180600	Cucumber (Gy14) v1	cgycmoB0513
CmoCh13G004180	CmaCh13G003920	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G004180	Cla009059	Watermelon (97103) v1	cmowmB184
CmoCh13G004180	Csa1G181370	Cucumber (Chinese Long) v2	cmocuB209
CmoCh13G004180	MELO3C025525	Melon (DHL92) v3.5.1	cmomeB186
CmoCh13G004180	ClCG01G010760	Watermelon (Charleston Gray)	cmowcgB173
CmoCh13G004180	CSPI01G15640	Wild cucumber (PI 183967)	cmocpiB211
CmoCh13G004180	Lsi02G011340	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G004180	Cp4.1LG20g06450	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G004180	MELO3C025525.2	Melon (DHL92) v3.6.1	cmomedB204
CmoCh13G004180	CsaV3_1G015770	Cucumber (Chinese Long) v3	cmocucB0241
CmoCh13G004180	CsaV3_UNG065510	Cucumber (Chinese Long) v3	cmocucB0258
CmoCh13G004180	Cla97C01G010520	Watermelon (97103) v2	cmowmbB194
CmoCh13G004180	Bhi08G000622	Wax gourd	cmowgoB0264
CmoCh13G004180	CsGy1G015350	Cucumber (Gy14) v2	cgybcmoB074
CmoCh13G004180	Carg25120	Silver-seed gourd	carcmoB1390
CmoCh13G004180	Carg25604	Silver-seed gourd	carcmoB0062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G004180	Cucumber (Chinese Long) v3	cmocucB0228
CmoCh13G004180	Watermelon (97103) v2	cmowmbB200
CmoCh13G004180	Watermelon (97103) v2	cmowmbB195
CmoCh13G004180	Wax gourd	cmowgoB0255
CmoCh13G004180	Wax gourd	cmowgoB0271
CmoCh13G004180	Cucurbita moschata (Rifu)	cmocmoB168
CmoCh13G004180	Cucurbita moschata (Rifu)	cmocmoB170
CmoCh13G004180	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G004180	Wild cucumber (PI 183967)	cmocpiB200
CmoCh13G004180	Cucumber (Chinese Long) v2	cmocuB196
CmoCh13G004180	Watermelon (Charleston Gray)	cmowcgB177
CmoCh13G004180	Watermelon (97103) v1	cmowmB192
CmoCh13G004180	Cucurbita pepo (Zucchini)	cmocpeB182
CmoCh13G004180	Bottle gourd (USVL1VR-Ls)	cmolsiB195
CmoCh13G004180	Cucumber (Gy14) v2	cgybcmoB065