Carg25604 (gene) Silver-seed gourd

NameCarg25604
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAcyl carrier protein
LocationCucurbita_argyrosperma_scaffold_223 : 146662 .. 148143 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAATCTGTATTTCCCTTCAAGGACTCTGGTATGGTTATCTACTTCAGTAATTATTGAAGTTCCATGTTTGAGAAAAGTTAGGTCTCGATAACTCAAAATGCACGTGTATATTTCTTTGTTCAACTCCCTCCACACACCAGGCACATTTTCACCTTACGGCCTTCGATGATTTGTTTGTATGCGTATCTATGATTCAATTATTTGTTGCCTGGACTGATGATGGTGCCTGTTCATTTCATCTCCTGTAAACGTGCAAAACATCAGAAATTCAATTCTGAAGCACGTAAAGATCAGAGGACCTACAACACAGTTGTTGATGAAGGATGAGAATGTAATGGAGAAACTAACTCGCCATCTGTGTTCATCAACAGGTTCAAGTTCTGACGAAATAGTTGATCGGGTGATTGGATTGGTTAAGAAATTCGATAGTGTCGTTGCCTGTAAGGTAATTAGTCCATGGTCACCCCATCATCTCATCTTTGTATTTTTATATCACTTGTCATGTCAGGAGTTTGTAGATTCCTTCCTAATTATCATATCCTATTAAGTTCAATACAATATATTTGCTGAAATAAAGGCATTTCTCAACGTTGGATGTTGTGTTGAGCCGAGCAGGTTACTGAAACGGCCGATTTCCAGAAAGACTTAAGTCTGGACAGTTTGGACAGGGTGGATGTAACGGCCTAGACCTCTTTGAGCTTTCTCTTTTGGGCTTTCCCTCAAGGTTTTTAAAACGCGTCTGCTAGGGAGAGATTTCCACACCCTTATAAAGAGTGTTTCGTTCTCTTCCCCAATCGACGTGGGATCTCACAATCCACCTCCATTCAGGGTCCAGTGTTCTCGCTGGCACTCGTTTGTTTCTCCAATTAATGTGGGACCACCACTAAATCCACTCTTCCTCAACCGATGTGGGATCTCACAATCCACCCCCATTCAGGGCTCAGTATCCTCACTGGCACTTGTTCCTTTCTCCAATTGATGTGGGACCACCACTAAATCCATCCCCTTCAGGGCCCAGCGTCCTCGCTGGCACTCGTTTCTTTCTCCAATCAATGTGGGACCACCATCAAATCCACCCCCCCTTCAGGGCCCAGCGTCCTTACTGCACACCGCCTCGTGTCTACCTCCCTTCGGGGAACAACCTCTTTGTTGGCACATCGTCCGATGTCTGGCTCTGATACCATTTGTAACGGCCTAGGCCTACCGCTAGCAAATACTATCTTCTTTGGACTTTCCCTTTCGGGCTTTCCCTCAAGGTTTTTAAAACGCGTTTGCTAGGGAGAGGTTTCCACACCCTTATAAAGGTTGTTTCGTTCTCCTCCCCACCCGATGTAGGATCTCACTATAGAGCTTGTAATGGCATTCAAACAAGATTTCTCCATTGAAATACCAGATGAAAATGCTGATAAGCTTATTTTCTGTGCCGTTGTACAGGAGGACTCGTTGCAGTCGACACTTCTGCCATATATGGTATGA

mRNA sequence

ATGGGCAAATCTGTATTTCCCTTCAAGGACTCTGGTTCAAGTTCTGACGAAATAGTTGATCGGGTGATTGGATTGGTTAAGAAATTCGATAGTGTCGTTGCCTGTAAGGTTACTGAAACGGCCGATTTCCAGAAAGACTTAAGTCTGGACAGTTTGGACAGGGTGGATAGTGTTTCGTTCTCTTCCCCAATCGACGTGGGATCTCACAATCCACCTCCATTCAGGGTCCAGTGTTCTCGCTGGCACTCGGCTCAGTATCCTCACTGGCACTTGTTCCTTTCTCCAATTGATGTGGGACCACCACTAAATCCATCCCCTTCAGGGCCCAGCGTCCTCGCTGGCACTCGTTTCTTTCTCCAATCAATGTGGGACCACCATCAAATCCACCCCCCCTTCAGGGCCCAGCGTCCTTACTGCACACCGCCTCGTGTCTACCTCCCTTCGGGGAACAACCTCTTTGTTGGCACATCGTCCGATGATCTCACTATAGAGCTTGTAATGGCATTCAAACAAGATTTCTCCATTGAAATACCAGATGAAAATGCTGATAAGCTTATTTTCTGTGCCGTTGTACAGGAGGACTCGTTGCAGTCGACACTTCTGCCATATATGGTATGA

Coding sequence (CDS)

ATGGGCAAATCTGTATTTCCCTTCAAGGACTCTGGTTCAAGTTCTGACGAAATAGTTGATCGGGTGATTGGATTGGTTAAGAAATTCGATAGTGTCGTTGCCTGTAAGGTTACTGAAACGGCCGATTTCCAGAAAGACTTAAGTCTGGACAGTTTGGACAGGGTGGATAGTGTTTCGTTCTCTTCCCCAATCGACGTGGGATCTCACAATCCACCTCCATTCAGGGTCCAGTGTTCTCGCTGGCACTCGGCTCAGTATCCTCACTGGCACTTGTTCCTTTCTCCAATTGATGTGGGACCACCACTAAATCCATCCCCTTCAGGGCCCAGCGTCCTCGCTGGCACTCGTTTCTTTCTCCAATCAATGTGGGACCACCATCAAATCCACCCCCCCTTCAGGGCCCAGCGTCCTTACTGCACACCGCCTCGTGTCTACCTCCCTTCGGGGAACAACCTCTTTGTTGGCACATCGTCCGATGATCTCACTATAGAGCTTGTAATGGCATTCAAACAAGATTTCTCCATTGAAATACCAGATGAAAATGCTGATAAGCTTATTTTCTGTGCCGTTGTACAGGAGGACTCGTTGCAGTCGACACTTCTGCCATATATGGTATGA

Protein sequence

MGKSVFPFKDSGSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSVSFSSPIDVGSHNPPPFRVQCSRWHSAQYPHWHLFLSPIDVGPPLNPSPSGPSVLAGTRFFLQSMWDHHQIHPPFRAQRPYCTPPRVYLPSGNNLFVGTSSDDLTIELVMAFKQDFSIEIPDENADKLIFCAVVQEDSLQSTLLPYMV
BLAST of Carg25604 vs. NCBI nr
Match: XP_022925341.1 (uncharacterized protein LOC111432627 isoform X2 [Cucurbita moschata])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 0

Query: 12 GSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVD 57
          GSSSDEIVDRVIGLVKKFD VVACKVTETADFQKDLSLDSLDRVD
Sbjct: 44 GSSSDEIVDRVIGLVKKFDRVVACKVTETADFQKDLSLDSLDRVD 88

BLAST of Carg25604 vs. NCBI nr
Match: XP_022927340.1 (acyl carrier protein 3, mitochondrial isoform X2 [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 13 SSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          +SSDEIVDRVIGLVKKFD + ACKVTETADFQKDLSLDSLDRV+ V
Sbjct: 44 TSSDEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELV 89

BLAST of Carg25604 vs. NCBI nr
Match: XP_022927338.1 (acyl carrier protein 3, mitochondrial isoform X1 [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 13  SSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
           +SSDEIVDRVIGLVKKFD + ACKVTETADFQKDLSLDSLDRV+ V
Sbjct: 67  TSSDEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELV 112

BLAST of Carg25604 vs. NCBI nr
Match: XP_023001631.1 (acyl carrier protein 3, mitochondrial [Cucurbita maxima] >XP_023001632.1 acyl carrier protein 3, mitochondrial [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 13 SSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          +SSDEIVDRVIGLVKKFD + ACKVTETADFQKDLSLDSLDRV+ V
Sbjct: 44 TSSDEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELV 89

BLAST of Carg25604 vs. NCBI nr
Match: XP_023520171.1 (acyl carrier protein 3, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023520172.1 acyl carrier protein 3, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.6e-11
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 0

Query: 13 SSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          +SSDEIVDRVIGLVKKFD + ACKVTETADFQKDLSLDSLDRV+ V
Sbjct: 44 TSSDEIVDRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELV 89

BLAST of Carg25604 vs. TAIR10
Match: AT5G47630.1 (mitochondrial acyl carrier protein 3)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 16 DEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          D+I+ RVI LVKK+D     +VTE ADFQKDLSLDSLD+ + V
Sbjct: 49 DQILSRVIELVKKYDKTNTSEVTERADFQKDLSLDSLDKTELV 91


HSP 2 Score: 41.6 bits (96), Expect = 6.9e-04
Identity = 21/36 (58.33%), Postives = 24/36 (66.67%), Query Frame = 0

Query: 164 ELVMAFKQDFSIEIPDENADKLIFCAVVQEDSLQST 200
           ELVMA +++FSIEIPDE ADKL  C  V    L  T
Sbjct: 89  ELVMAIEEEFSIEIPDEKADKLTCCGDVATYILSET 124

BLAST of Carg25604 vs. TAIR10
Match: AT1G65290.1 (mitochondrial acyl carrier protein 2)

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-05
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 17 EIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          E+ DRV+ +VK F  V   KVT  A+FQ DL LDSLD V+ V
Sbjct: 49 EVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVV 90

BLAST of Carg25604 vs. TAIR10
Match: AT2G44620.1 (mitochondrial acyl carrier protein 1)

HSP 1 Score: 45.4 bits (106), Expect = 4.8e-05
Identity = 25/53 (47.17%), Postives = 30/53 (56.60%), Query Frame = 0

Query: 6  FPFKDSGSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          F   D   S + +VDRV+ +VK F  V   KVT    FQ DL LDSLD V+ V
Sbjct: 34 FSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIV 86

BLAST of Carg25604 vs. Swiss-Prot
Match: sp|Q9FGJ4|ACPM3_ARATH (Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP2 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 0

Query: 16 DEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          D+I+ RVI LVKK+D     +VTE ADFQKDLSLDSLD+ + V
Sbjct: 49 DQILSRVIELVKKYDKTNTSEVTERADFQKDLSLDSLDKTELV 91

BLAST of Carg25604 vs. Swiss-Prot
Match: sp|O80800|ACPM2_ARATH (Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP2 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.6e-04
Identity = 23/42 (54.76%), Postives = 28/42 (66.67%), Query Frame = 0

Query: 17 EIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          E+ DRV+ +VK F  V   KVT  A+FQ DL LDSLD V+ V
Sbjct: 49 EVTDRVLSVVKNFQKVDPSKVTPKANFQNDLGLDSLDSVEVV 90

BLAST of Carg25604 vs. Swiss-Prot
Match: sp|P53665|ACPM1_ARATH (Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP1 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.6e-04
Identity = 25/53 (47.17%), Postives = 30/53 (56.60%), Query Frame = 0

Query: 6  FPFKDSGSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          F   D   S + +VDRV+ +VK F  V   KVT    FQ DL LDSLD V+ V
Sbjct: 34 FSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIV 86

BLAST of Carg25604 vs. TrEMBL
Match: tr|A0A1S3CK44|A0A1S3CK44_CUCME (Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103501710 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 11 SGSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          +G SS+EI DRVIGLVKKFD + ACKVTETADFQKDLSLDSLDRV+ V
Sbjct: 42 TGRSSNEIADRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELV 89

BLAST of Carg25604 vs. TrEMBL
Match: tr|A0A1S4E499|A0A1S4E499_CUCME (Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103501710 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 11 SGSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          +G SS+EI DRVIGLVKKFD + ACKVTETADFQKDLSLDSLDRV+ V
Sbjct: 50 TGRSSNEIADRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELV 97

BLAST of Carg25604 vs. TrEMBL
Match: tr|A0A0A0LVR9|A0A0A0LVR9_CUCSA (Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_1G181370 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 11  SGSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
           +G SS+EI DRVIGLVKKFD + ACKVTETADFQKDLSLDSLDRV+ V
Sbjct: 155 TGRSSNEIADRVIGLVKKFDRIDACKVTETADFQKDLSLDSLDRVELV 202

BLAST of Carg25604 vs. TrEMBL
Match: tr|A0A1R3I312|A0A1R3I312_COCAP (Acyl carrier protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_15256 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 37/48 (77.08%), Postives = 43/48 (89.58%), Query Frame = 0

Query: 11 SGSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          +G+S+DEI+DRVIGLVKK+D V   KVTETADFQKDLSLDSLDRV+ V
Sbjct: 43 TGASNDEIMDRVIGLVKKYDKVDVSKVTETADFQKDLSLDSLDRVELV 90

BLAST of Carg25604 vs. TrEMBL
Match: tr|B9HCD1|B9HCD1_POPTR (Acyl carrier protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G005700v3 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-09
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0

Query: 12 GSSSDEIVDRVIGLVKKFDSVVACKVTETADFQKDLSLDSLDRVDSV 59
          G+S D+I+DRVIGLVKKFD + A KVTETADFQKDL LDSLDRV+ V
Sbjct: 42 GTSPDKIMDRVIGLVKKFDKIDATKVTETADFQKDLCLDSLDRVELV 88

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022925341.11.0e-1397.78uncharacterized protein LOC111432627 isoform X2 [Cucurbita moschata][more]
XP_022927340.11.6e-1186.96acyl carrier protein 3, mitochondrial isoform X2 [Cucurbita moschata][more]
XP_022927338.11.6e-1186.96acyl carrier protein 3, mitochondrial isoform X1 [Cucurbita moschata][more]
XP_023001631.11.6e-1186.96acyl carrier protein 3, mitochondrial [Cucurbita maxima] >XP_023001632.1 acyl ca... [more]
XP_023520171.11.6e-1186.96acyl carrier protein 3, mitochondrial [Cucurbita pepo subsp. pepo] >XP_023520172... [more]
Match NameE-valueIdentityDescription
AT5G47630.11.0e-0762.79mitochondrial acyl carrier protein 3[more]
AT1G65290.13.7e-0554.76mitochondrial acyl carrier protein 2[more]
AT2G44620.14.8e-0547.17mitochondrial acyl carrier protein 1[more]
Match NameE-valueIdentityDescription
sp|Q9FGJ4|ACPM3_ARATH1.9e-0662.79Acyl carrier protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP2 ... [more]
sp|O80800|ACPM2_ARATH6.6e-0454.76Acyl carrier protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP2 ... [more]
sp|P53665|ACPM1_ARATH8.6e-0447.17Acyl carrier protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTACP1 ... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CK44|A0A1S3CK44_CUCME3.2e-1181.25Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103501710 PE=3 SV=1[more]
tr|A0A1S4E499|A0A1S4E499_CUCME3.2e-1181.25Acyl carrier protein OS=Cucumis melo OX=3656 GN=LOC103501710 PE=3 SV=1[more]
tr|A0A0A0LVR9|A0A0A0LVR9_CUCSA3.2e-1181.25Acyl carrier protein OS=Cucumis sativus OX=3659 GN=Csa_1G181370 PE=3 SV=1[more]
tr|A0A1R3I312|A0A1R3I312_COCAP4.6e-1077.08Acyl carrier protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_15256 PE=3 SV=... [more]
tr|B9HCD1|B9HCD1_POPTR2.3e-0976.60Acyl carrier protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G005700v3 PE=3 S... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006633fatty acid biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR003231Acyl_carrier
IPR036736ACP-like_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006633 fatty acid biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25604-RACarg25604-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036736ACP-like superfamilyGENE3DG3DSA:1.10.1200.10coord: 9..60
e-value: 5.4E-7
score: 31.7
NoneNo IPR availablePANTHERPTHR20863ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATEDcoord: 9..58
NoneNo IPR availablePANTHERPTHR20863ACYL CARRIER PROTEIN/ZINC FINGER PROTEIN 593-RELATEDcoord: 163..192
NoneNo IPR availablePANTHERPTHR20863:SF32ACYL CARRIER PROTEIN 3, MITOCHONDRIALcoord: 9..58
NoneNo IPR availablePANTHERPTHR20863:SF32ACYL CARRIER PROTEIN 3, MITOCHONDRIALcoord: 163..192
IPR003231Acyl carrier protein (ACP)PRODOMPD000887coord: 164..191
e-value: 0.001
score: 98.0