CmoCh13G000380 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G000380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Basic-leucine zipper (bZIP) transcription factor family protein
Location	Cmo_Chr13 : 241928 .. 242521 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGATTATAATTTGCATCAACACCCTCATCCATGCAATGAACTCGGCTCCGATGACCGTCGTTTATCGACCGATTCGGTCTCGGTATGGCGGAGATCTTTCGTGATGGGCCACGGAGACGAGGAAGGCAGCAGCGGGGGGAGGGCGGCGGATGGATGGCGGAGTGATGGGTTGCCTCCTTTAAGCAAGACTGGTGGCGGAGAGATGAGCTCCGGCTGCGGCGACGGCAGAAATTCCGGGCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGGTGATGAACCCTAAAACCTATAAATCTTCGTTTTAATTTGGTGTTTTTTAATTTAGGGTTTGATTTTTTTTTTTTGTTGTAGAATAATGTCGAATCGAGTCTCGGCTCAAAAATCTAGGCTTAAAAAAGTTCAATATGTAGCTGATATGGAAAGGAAGCTCAAAGCTCTCGAGGTATTCAAACTCGATATCGATACCGATACCAAGATTTCGATATCAATTTCATCGCTCTATGCTTTATATGAATCAATCTTACTGTTTCGAGTCTTAATTTGTTATGATAAAAGATTGAATCAAAGCAAGATGCATGA

mRNA sequence

ATGGGTGATTATAATTTGCATCAACACCCTCATCCATGCAATGAACTCGGCTCCGATGACCGTCGTTTATCGACCGATTCGGTCTCGGTATGGCGGAGATCTTTCGTGATGGGCCACGGAGACGAGGAAGGCAGCAGCGGGGGGAGGGCGGCGGATGGATGGCGGAGTGATGGGTTGCCTCCTTTAAGCAAGACTGGTGGCGGAGAGATGAGCTCCGGCTGCGGCGACGGCAGAAATTCCGGGCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGAATAATGTCGAATCGAGTCTCGGCTCAAAAATCTAGGCTTAAAAAAGTTCAATATGTAGCTGATATGGAAAGGAAGCTCAAAGCTCTCGAGATTGAATCAAAGCAAGATGCATGA

Coding sequence (CDS)

ATGGGTGATTATAATTTGCATCAACACCCTCATCCATGCAATGAACTCGGCTCCGATGACCGTCGTTTATCGACCGATTCGGTCTCGGTATGGCGGAGATCTTTCGTGATGGGCCACGGAGACGAGGAAGGCAGCAGCGGGGGGAGGGCGGCGGATGGATGGCGGAGTGATGGGTTGCCTCCTTTAAGCAAGACTGGTGGCGGAGAGATGAGCTCCGGCTGCGGCGACGGCAGAAATTCCGGGCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGAATAATGTCGAATCGAGTCTCGGCTCAAAAATCTAGGCTTAAAAAAGTTCAATATGTAGCTGATATGGAAAGGAAGCTCAAAGCTCTCGAGATTGAATCAAAGCAAGATGCATGA

Homology

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BLAST of CmoCh13G000380 vs. TrEMBL
Match: B9HNC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07880g PE=4 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 80  SGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
           + R IDPNMDP+KLKR++SNRVSAQKSRLK++QY+AD+ERK+KALE E
Sbjct: 155 AARAIDPNMDPKKLKRVLSNRVSAQKSRLKRLQYLADIERKVKALEEE 202

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BLAST of CmoCh13G000380 vs. TrEMBL
Match: A0A067LMX8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17376 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 23  LSTDSVSVWRRSFVMGHGDEEGSSGGR-AADGWRSDGLPPLSKTGGGEMSSGCGDGRNS- 82
           L+  S  VW++ + M +     +SG +     +  D L     +   ++ +  GD   S 
Sbjct: 30  LAPTSFQVWKKPYYMKNSSSSTTSGTKNPLKSFTIDSLESDRNSTNHDIVASGGDRNLSN 89

Query: 83  ------------GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALE 126
                       GR++DPNMDP+KLKRI+SNRVSAQKSR+KK+ YV +MERK KALE
Sbjct: 90  IDEKEAGVHGRLGRDLDPNMDPKKLKRIISNRVSAQKSRMKKLHYVTEMERKAKALE 146

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BLAST of CmoCh13G000380 vs. TrEMBL
Match: A0A067FHX4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0383412mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-09
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1


Query: 5   NLHQHPHPCNELGSDDRRLSTDSVSVWRRSFVMGHGDEEGSSGGRAADGWR--SDGLPPL 64
           N +    P + + S    L T S+ VW++ + M +GD   SS G         SD LP +
Sbjct: 10  NNNNKKKPFSLMDSSSLPLVTGSIQVWKKPYSMNYGDNWASSSGTKPSHPPPPSDHLPMV 69

Query: 65  S-----KTGGGEMSSGCGDGR----NSG-----------RNIDPNMDPRKLKRIMSNRVS 124
           +     KT G    S   + +    +SG           RN + +MDP++L+RI SNRVS
Sbjct: 70  NDFDNNKTSGNRNPSPPSEHKMVIPSSGDDTAAVNTRWTRNAEHSMDPKRLRRIESNRVS 129

Query: 125 AQKSRLKKVQYVADMERKLKALE 126
           AQKSR+KK+QYV D+E+K KALE
Sbjct: 130 AQKSRMKKLQYVTDLEKKAKALE 152

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BLAST of CmoCh13G000380 vs. TrEMBL
Match: A0A061GXH3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042188 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 73  GCGDGRNSGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
           G G     GR +D +MDP+KL+R++SNR+SAQKSR+KK+QYV++ME+K++ LE +
Sbjct: 170 GNGAAVRWGRKLDLDMDPKKLRRVISNRISAQKSRMKKLQYVSEMEKKVEVLEAQ 224

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BLAST of CmoCh13G000380 vs. NCBI nr
Match: gi|778665222|ref|XP_011648516.1| (PREDICTED: basic leucine zipper 34-like [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 3.8e-21
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 19  DDRRL--STDSVSVWRRSFVMGHGDEEGSSGGRAADGWRSDGLPPLSKTGGGEMSSGCG- 78
           D+RRL  + +SVS WRRSFV+G   E         D  R     PL   G GE+SSG G 
Sbjct: 20  DNRRLVINNNSVSDWRRSFVIGCSRE---------DDERRRPAVPLPPFGAGELSSGDGL 79

Query: 79  ---DGRNS------GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALE 126
              DGRN+      GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLK+LE
Sbjct: 80  GNVDGRNNSEQILYGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKSLE 129

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BLAST of CmoCh13G000380 vs. NCBI nr
Match: gi|659115444|ref|XP_008457560.1| (PREDICTED: transcription factor VIP1-like [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 70/111 (63.06%), Postives = 75/111 (67.57%), Query Frame = 1


Query: 26  DSVSVWRRSFVMGHGDEEGSSGGRAADGWRSDGLPPLSKTGGGEMSSGCG-----DGRNS 85
           +SVS WRRSFV+G   E         D  R     PL+  G GEMSSG       DGRN+
Sbjct: 28  NSVSDWRRSFVIGCSRE---------DEERRRPTVPLAPFGAGEMSSGGDGLGNVDGRNN 87

Query: 86  ------GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALE 126
                 GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLK+LE
Sbjct: 88  SEQILYGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKSLE 129

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BLAST of CmoCh13G000380 vs. NCBI nr
Match: gi|1009116050|ref|XP_015874568.1| (PREDICTED: basic leucine zipper 34-like [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 82  RNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIESKQ 131
           RN+D N+DPRKLKRI+SNRVSAQKSR+KK+QYV DMER+LKALE+  ++
Sbjct: 110 RNVDQNVDPRKLKRIISNRVSAQKSRMKKLQYVTDMERRLKALEVTVRE 158

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BLAST of CmoCh13G000380 vs. NCBI nr
Match: gi|566186863|ref|XP_002313977.2| (hypothetical protein POPTR_0009s07880g [Populus trichocarpa])

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 80  SGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
           + R IDPNMDP+KLKR++SNRVSAQKSRLK++QY+AD+ERK+KALE E
Sbjct: 155 AARAIDPNMDPKKLKRVLSNRVSAQKSRLKRLQYLADIERKVKALEEE 202

[Close]

BLAST of CmoCh13G000380 vs. NCBI nr
Match: gi|1000972824|ref|XP_015573024.1| (PREDICTED: basic leucine zipper 34-like isoform X1 [Ricinus communis])

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 23  LSTDSVSVWRRSFVMGHGDEEGSSGGRAADGW-RSDG-----LPPLSKTGGGEMSSGCGD 82
           L+  S   W++ +     D    +  +  D   +SD      + PLS     +    CG 
Sbjct: 36  LAPSSFQFWKKPYFSNPDDSLADNHNKYRDSSPQSDENLDTFVTPLSSDYPVKPEIVCG- 95

Query: 83  GRNSGRN-IDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
              SGRN +DPNMDP+KLKRI+SNRVSAQKSR+KK+QYV +MERK KALE+E
Sbjct: 96  --RSGRNQLDPNMDPKKLKRIISNRVSAQKSRMKKLQYVTEMERKAKALEVE 144

The following BLAST results are available for this feature:

BLAST of CmoCh13G000380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G000380 vs. TrEMBL


Match Name	E-value	Identity	Description
B9HNC1_POPTR	6.1e-10	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07880g PE=4 SV=2	[more]
A0A067LMX8_JATCU	3.9e-09	40.17	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17376 PE=4 SV=1	[more]
A0A067FHX4_CITSI	8.7e-09	37.76	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0383412mg PE=4 ...	[more]
A0A061GXH3_THECC	1.4e-06	54.55	Uncharacterized protein OS=Theobroma cacao GN=TCM_042188 PE=4 SV=1	[more]

BLAST of CmoCh13G000380 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh13G000380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665222\|ref\|XP_011648516.1\|	3.8e-21	62.18	PREDICTED: basic leucine zipper 34-like [Cucumis sativus]	[more]
gi\|659115444\|ref\|XP_008457560.1\|	1.6e-19	63.06	PREDICTED: transcription factor VIP1-like [Cucumis melo]	[more]
gi\|1009116050\|ref\|XP_015874568.1\|	3.9e-10	73.47	PREDICTED: basic leucine zipper 34-like [Ziziphus jujuba]	[more]
gi\|566186863\|ref\|XP_002313977.2\|	8.7e-10	75.00	hypothetical protein POPTR_0009s07880g [Populus trichocarpa]	[more]
gi\|1000972824\|ref\|XP_015573024.1\|	8.7e-10	45.54	PREDICTED: basic leucine zipper 34-like isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004827	bZIP

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009410	response to xenobiotic stimulus
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G000380.1	CmoCh13G000380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 91..129 score: 1.
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 94..109 scor
None	No IPR available	unknown	Coil	Coil	coord: 114..132 scor
None	No IPR available	GENE3D	G3DSA:1.20.5.170		coord: 82..128 score: 2.
None	No IPR available	unknown	SSF57959	Leucine zipper domain	coord: 91..128 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G000380	CmaCh01G006930	Cucurbita maxima (Rimu)	cmacmoB458
CmoCh13G000380	Cla008141	Watermelon (97103) v1	cmowmB173
CmoCh13G000380	Csa1G533410	Cucumber (Chinese Long) v2	cmocuB204
CmoCh13G000380	MELO3C020524	Melon (DHL92) v3.5.1	cmomeB181
CmoCh13G000380	ClCG03G000470	Watermelon (Charleston Gray)	cmowcgB184
CmoCh13G000380	CSPI01G24140	Wild cucumber (PI 183967)	cmocpiB206
CmoCh13G000380	Cp4.1LG02g11990	Cucurbita pepo (Zucchini)	cmocpeB211
CmoCh13G000380	MELO3C020524.2	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G000380	CsaV3_1G036450	Cucumber (Chinese Long) v3	cmocucB0236
CmoCh13G000380	Cla97C03G051270	Watermelon (97103) v2	cmowmbB209
CmoCh13G000380	Bhi08G000395	Wax gourd	cmowgoB0245
CmoCh13G000380	CsGy1G023630	Cucumber (Gy14) v2	cgybcmoB069
CmoCh13G000380	Carg07050	Silver-seed gourd	carcmoB0705

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G000380	CmoCh01G007180	Cucurbita moschata (Rifu)	cmocmoB173

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G000380	Watermelon (97103) v2	cmowmbB204
CmoCh13G000380	Wax gourd	cmowgoB0238
CmoCh13G000380	Cucurbita moschata (Rifu)	cmocmoB180
CmoCh13G000380	Cucurbita moschata (Rifu)	cmocmoB186
CmoCh13G000380	Cucurbita moschata (Rifu)	cmocmoB187
CmoCh13G000380	Cucumber (Gy14) v1	cgycmoB0384
CmoCh13G000380	Cucumber (Gy14) v1	cgycmoB0417
CmoCh13G000380	Cucumber (Gy14) v1	cgycmoB0418
CmoCh13G000380	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G000380	Cucurbita maxima (Rimu)	cmacmoB577
CmoCh13G000380	Watermelon (Charleston Gray)	cmowcgB180
CmoCh13G000380	Watermelon (97103) v1	cmowmB197
CmoCh13G000380	Cucurbita pepo (Zucchini)	cmocpeB198
CmoCh13G000380	Cucurbita pepo (Zucchini)	cmocpeB202
CmoCh13G000380	Bottle gourd (USVL1VR-Ls)	cmolsiB186
CmoCh13G000380	Bottle gourd (USVL1VR-Ls)	cmolsiB191
CmoCh13G000380	Silver-seed gourd	carcmoB0843
CmoCh13G000380	Silver-seed gourd	carcmoB0913