CmoCh13G000380.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G000380.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Basic-leucine zipper (bZIP) transcription factor family protein
Location	Cmo_Chr13 : 241928 .. 242521 (-)
Sequence length	399

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGATTATAATTTGCATCAACACCCTCATCCATGCAATGAACTCGGCTCCGATGACCGTCGTTTATCGACCGATTCGGTCTCGGTATGGCGGAGATCTTTCGTGATGGGCCACGGAGACGAGGAAGGCAGCAGCGGGGGGAGGGCGGCGGATGGATGGCGGAGTGATGGGTTGCCTCCTTTAAGCAAGACTGGTGGCGGAGAGATGAGCTCCGGCTGCGGCGACGGCAGAAATTCCGGGCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGGTGATGAACCCTAAAACCTATAAATCTTCGTTTTAATTTGGTGTTTTTTAATTTAGGGTTTGATTTTTTTTTTTTGTTGTAGAATAATGTCGAATCGAGTCTCGGCTCAAAAATCTAGGCTTAAAAAAGTTCAATATGTAGCTGATATGGAAAGGAAGCTCAAAGCTCTCGAGGTATTCAAACTCGATATCGATACCGATACCAAGATTTCGATATCAATTTCATCGCTCTATGCTTTATATGAATCAATCTTACTGTTTCGAGTCTTAATTTGTTATGATAAAAGATTGAATCAAAGCAAGATGCATGA

mRNA sequence

ATGGGTGATTATAATTTGCATCAACACCCTCATCCATGCAATGAACTCGGCTCCGATGACCGTCGTTTATCGACCGATTCGGTCTCGGTATGGCGGAGATCTTTCGTGATGGGCCACGGAGACGAGGAAGGCAGCAGCGGGGGGAGGGCGGCGGATGGATGGCGGAGTGATGGGTTGCCTCCTTTAAGCAAGACTGGTGGCGGAGAGATGAGCTCCGGCTGCGGCGACGGCAGAAATTCCGGGCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGAATAATGTCGAATCGAGTCTCGGCTCAAAAATCTAGGCTTAAAAAAGTTCAATATGTAGCTGATATGGAAAGGAAGCTCAAAGCTCTCGAGATTGAATCAAAGCAAGATGCATGA

Coding sequence (CDS)

ATGGGTGATTATAATTTGCATCAACACCCTCATCCATGCAATGAACTCGGCTCCGATGACCGTCGTTTATCGACCGATTCGGTCTCGGTATGGCGGAGATCTTTCGTGATGGGCCACGGAGACGAGGAAGGCAGCAGCGGGGGGAGGGCGGCGGATGGATGGCGGAGTGATGGGTTGCCTCCTTTAAGCAAGACTGGTGGCGGAGAGATGAGCTCCGGCTGCGGCGACGGCAGAAATTCCGGGCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGAATAATGTCGAATCGAGTCTCGGCTCAAAAATCTAGGCTTAAAAAAGTTCAATATGTAGCTGATATGGAAAGGAAGCTCAAAGCTCTCGAGATTGAATCAAAGCAAGATGCATGA

Homology

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BLAST of CmoCh13G000380.1 vs. TrEMBL
Match: B9HNC1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07880g PE=4 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 6.1e-10
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 80  SGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
           + R IDPNMDP+KLKR++SNRVSAQKSRLK++QY+AD+ERK+KALE E
Sbjct: 155 AARAIDPNMDPKKLKRVLSNRVSAQKSRLKRLQYLADIERKVKALEEE 202

[Close]

BLAST of CmoCh13G000380.1 vs. TrEMBL
Match: A0A067LMX8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17376 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 1


Query: 23  LSTDSVSVWRRSFVMGHGDEEGSSGGR-AADGWRSDGLPPLSKTGGGEMSSGCGDGRNS- 82
           L+  S  VW++ + M +     +SG +     +  D L     +   ++ +  GD   S 
Sbjct: 30  LAPTSFQVWKKPYYMKNSSSSTTSGTKNPLKSFTIDSLESDRNSTNHDIVASGGDRNLSN 89

Query: 83  ------------GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALE 126
                       GR++DPNMDP+KLKRI+SNRVSAQKSR+KK+ YV +MERK KALE
Sbjct: 90  IDEKEAGVHGRLGRDLDPNMDPKKLKRIISNRVSAQKSRMKKLHYVTEMERKAKALE 146

[Close]

BLAST of CmoCh13G000380.1 vs. TrEMBL
Match: A0A067FHX4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0383412mg PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 8.7e-09
Identity = 54/143 (37.76%), Postives = 76/143 (53.15%), Query Frame = 1


Query: 5   NLHQHPHPCNELGSDDRRLSTDSVSVWRRSFVMGHGDEEGSSGGRAADGWR--SDGLPPL 64
           N +    P + + S    L T S+ VW++ + M +GD   SS G         SD LP +
Sbjct: 10  NNNNKKKPFSLMDSSSLPLVTGSIQVWKKPYSMNYGDNWASSSGTKPSHPPPPSDHLPMV 69

Query: 65  S-----KTGGGEMSSGCGDGR----NSG-----------RNIDPNMDPRKLKRIMSNRVS 124
           +     KT G    S   + +    +SG           RN + +MDP++L+RI SNRVS
Sbjct: 70  NDFDNNKTSGNRNPSPPSEHKMVIPSSGDDTAAVNTRWTRNAEHSMDPKRLRRIESNRVS 129

Query: 125 AQKSRLKKVQYVADMERKLKALE 126
           AQKSR+KK+QYV D+E+K KALE
Sbjct: 130 AQKSRMKKLQYVTDLEKKAKALE 152

[Close]

BLAST of CmoCh13G000380.1 vs. TrEMBL
Match: A0A061GXH3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042188 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 73  GCGDGRNSGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
           G G     GR +D +MDP+KL+R++SNR+SAQKSR+KK+QYV++ME+K++ LE +
Sbjct: 170 GNGAAVRWGRKLDLDMDPKKLRRVISNRISAQKSRMKKLQYVSEMEKKVEVLEAQ 224

[Close]

BLAST of CmoCh13G000380.1 vs. NCBI nr
Match: gi|778665222|ref|XP_011648516.1| (PREDICTED: basic leucine zipper 34-like [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 3.8e-21
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 19  DDRRL--STDSVSVWRRSFVMGHGDEEGSSGGRAADGWRSDGLPPLSKTGGGEMSSGCG- 78
           D+RRL  + +SVS WRRSFV+G   E         D  R     PL   G GE+SSG G 
Sbjct: 20  DNRRLVINNNSVSDWRRSFVIGCSRE---------DDERRRPAVPLPPFGAGELSSGDGL 79

Query: 79  ---DGRNS------GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALE 126
              DGRN+      GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLK+LE
Sbjct: 80  GNVDGRNNSEQILYGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKSLE 129

[Close]

BLAST of CmoCh13G000380.1 vs. NCBI nr
Match: gi|659115444|ref|XP_008457560.1| (PREDICTED: transcription factor VIP1-like [Cucumis melo])

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-19
Identity = 70/111 (63.06%), Postives = 75/111 (67.57%), Query Frame = 1


Query: 26  DSVSVWRRSFVMGHGDEEGSSGGRAADGWRSDGLPPLSKTGGGEMSSGCG-----DGRNS 85
           +SVS WRRSFV+G   E         D  R     PL+  G GEMSSG       DGRN+
Sbjct: 28  NSVSDWRRSFVIGCSRE---------DEERRRPTVPLAPFGAGEMSSGGDGLGNVDGRNN 87

Query: 86  ------GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALE 126
                 GRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLK+LE
Sbjct: 88  SEQILYGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKSLE 129

[Close]

BLAST of CmoCh13G000380.1 vs. NCBI nr
Match: gi|1009116050|ref|XP_015874568.1| (PREDICTED: basic leucine zipper 34-like [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 1


Query: 82  RNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIESKQ 131
           RN+D N+DPRKLKRI+SNRVSAQKSR+KK+QYV DMER+LKALE+  ++
Sbjct: 110 RNVDQNVDPRKLKRIISNRVSAQKSRMKKLQYVTDMERRLKALEVTVRE 158

[Close]

BLAST of CmoCh13G000380.1 vs. NCBI nr
Match: gi|566186863|ref|XP_002313977.2| (hypothetical protein POPTR_0009s07880g [Populus trichocarpa])

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 36/48 (75.00%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 80  SGRNIDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
           + R IDPNMDP+KLKR++SNRVSAQKSRLK++QY+AD+ERK+KALE E
Sbjct: 155 AARAIDPNMDPKKLKRVLSNRVSAQKSRLKRLQYLADIERKVKALEEE 202

[Close]

BLAST of CmoCh13G000380.1 vs. NCBI nr
Match: gi|1000972824|ref|XP_015573024.1| (PREDICTED: basic leucine zipper 34-like isoform X1 [Ricinus communis])

HSP 1 Score: 72.0 bits (175), Expect = 8.7e-10
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1


Query: 23  LSTDSVSVWRRSFVMGHGDEEGSSGGRAADGW-RSDG-----LPPLSKTGGGEMSSGCGD 82
           L+  S   W++ +     D    +  +  D   +SD      + PLS     +    CG 
Sbjct: 36  LAPSSFQFWKKPYFSNPDDSLADNHNKYRDSSPQSDENLDTFVTPLSSDYPVKPEIVCG- 95

Query: 83  GRNSGRN-IDPNMDPRKLKRIMSNRVSAQKSRLKKVQYVADMERKLKALEIE 128
              SGRN +DPNMDP+KLKRI+SNRVSAQKSR+KK+QYV +MERK KALE+E
Sbjct: 96  --RSGRNQLDPNMDPKKLKRIISNRVSAQKSRMKKLQYVTEMERKAKALEVE 144

The following BLAST results are available for this feature:

BLAST of CmoCh13G000380.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G000380.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B9HNC1_POPTR	6.1e-10	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s07880g PE=4 SV=2	[more]
A0A067LMX8_JATCU	3.9e-09	40.17	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17376 PE=4 SV=1	[more]
A0A067FHX4_CITSI	8.7e-09	37.76	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0383412mg PE=4 ...	[more]
A0A061GXH3_THECC	1.4e-06	54.55	Uncharacterized protein OS=Theobroma cacao GN=TCM_042188 PE=4 SV=1	[more]

BLAST of CmoCh13G000380.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh13G000380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778665222\|ref\|XP_011648516.1\|	3.8e-21	62.18	PREDICTED: basic leucine zipper 34-like [Cucumis sativus]	[more]
gi\|659115444\|ref\|XP_008457560.1\|	1.6e-19	63.06	PREDICTED: transcription factor VIP1-like [Cucumis melo]	[more]
gi\|1009116050\|ref\|XP_015874568.1\|	3.9e-10	73.47	PREDICTED: basic leucine zipper 34-like [Ziziphus jujuba]	[more]
gi\|566186863\|ref\|XP_002313977.2\|	8.7e-10	75.00	hypothetical protein POPTR_0009s07880g [Populus trichocarpa]	[more]
gi\|1000972824\|ref\|XP_015573024.1\|	8.7e-10	45.54	PREDICTED: basic leucine zipper 34-like isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004827	bZIP

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0009410	response to xenobiotic stimulus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G000380	CmoCh13G000380	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G000380.1	CmoCh13G000380.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G000380.1.CDS.3	CmoCh13G000380.1.CDS.3	CDS
CmoCh13G000380.1.CDS.2	CmoCh13G000380.1.CDS.2	CDS
CmoCh13G000380.1.CDS.1	CmoCh13G000380.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G000380.1.exon.3	CmoCh13G000380.1.exon.3	exon
CmoCh13G000380.1.exon.2	CmoCh13G000380.1.exon.2	exon
CmoCh13G000380.1.exon.1	CmoCh13G000380.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004827	Basic-leucine zipper domain	PFAM	PF00170	bZIP_1	coord: 91..129 score: 1.
IPR004827	Basic-leucine zipper domain	PROSITE	PS00036	BZIP_BASIC	coord: 94..109 scor
None	No IPR available	unknown	Coil	Coil	coord: 114..132 scor
None	No IPR available	GENE3D	G3DSA:1.20.5.170		coord: 82..128 score: 2.
None	No IPR available	unknown	SSF57959	Leucine zipper domain	coord: 91..128 score: 2.0