MELO3C020524 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C020524
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	cytochrome P450, family 705, subfamily A, polypeptide 21
Location	chr12 : 533871 .. 534239 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATTATAATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACATAATGGAATTGTGTTCAGTAAGTACTTATTCTACTACTCCGCCGGTTACGATCCGTCCTGACAACCGTTGTTTGGTTGTCAACAATTCGGTCTCGGACTGGCGGAGATCTTTTGTGATTGGTTGCTCGAGAGAAGATGAAGAAAGGAGGAGGCCGACAGTGCCGCTGGCTCCTTTTGGCGCTGGAGAGATGAGCTCTGGTGGTGACGGGTTGGGGAACGTGGATGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGGTTTGAACCCTAA

mRNA sequence

ATGGAAGATTATAATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACATAATGGAATTGTGTTCAGTAAGTACTTATTCTACTACTCCGCCGGTTACGATCCGTCCTGACAACCGTTGTTTGGTTGTCAACAATTCGGTCTCGGACTGGCGGAGATCTTTTGTGATTGGTTGCTCGAGAGAAGATGAAGAAAGGAGGAGGCCGACAGTGCCGCTGGCTCCTTTTGGCGCTGGAGAGATGAGCTCTGGTGGTGACGGGTTGGGGAACGTGGATGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGGTTTGAACCCTAA

Coding sequence (CDS)

ATGGAAGATTATAATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACATAATGGAATTGTGTTCAGTAAGTACTTATTCTACTACTCCGCCGGTTACGATCCGTCCTGACAACCGTTGTTTGGTTGTCAACAATTCGGTCTCGGACTGGCGGAGATCTTTTGTGATTGGTTGCTCGAGAGAAGATGAAGAAAGGAGGAGGCCGACAGTGCCGCTGGCTCCTTTTGGCGCTGGAGAGATGAGCTCTGGTGGTGACGGGTTGGGGAACGTGGATGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCTAATATGGATCCAAGGAAACTCAAACGGTTTGAACCCTAA

Protein sequence

MEDYNLLQNQNHPPCNFQDIMELCSVSTYSTTPPVTIRPDNRCLVVNNSVSDWRRSFVIGCSREDEERRRPTVPLAPFGAGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKRFEP*

Homology

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BLAST of MELO3C020524 vs. TrEMBL
Match: A0A0A0LXP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533410 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.6e-57
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 1   MEDYNLLQNQNHPPCNFQDIMELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVI 60
           MEDY+LLQNQNHPPCNFQD+MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVI
Sbjct: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60

Query: 61  GCSREDEERRRPTVPLAPFGAGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120
           GCSRED+ERRRP VPL PFGAGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR
Sbjct: 61  GCSREDDERRRPAVPLPPFGAGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120

Query: 121 FEP 123
           FEP
Sbjct: 121 FEP 122

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BLAST of MELO3C020524 vs. NCBI nr
Match: gi|700210738|gb|KGN65834.1| (hypothetical protein Csa_1G533410 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 5.2e-57
Identity = 111/123 (90.24%), Postives = 116/123 (94.31%), Query Frame = 1


Query: 1   MEDYNLLQNQNHPPCNFQDIMELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVI 60
           MEDY+LLQNQNHPPCNFQD+MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVI
Sbjct: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60

Query: 61  GCSREDEERRRPTVPLAPFGAGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120
           GCSRED+ERRRP VPL PFGAGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR
Sbjct: 61  GCSREDDERRRPAVPLPPFGAGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120

Query: 121 FEP 123
           FEP
Sbjct: 121 FEP 122

[Close]

BLAST of MELO3C020524 vs. NCBI nr
Match: gi|659115444|ref|XP_008457560.1| (PREDICTED: transcription factor VIP1-like [Cucumis melo])

HSP 1 Score: 208.4 bits (529), Expect = 7.2e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 21  MELCSVSTYSTTPPVTIRPDNRCLVVNNSVSDWRRSFVIGCSREDEERRRPTVPLAPFGA 80
           MELCSVSTYSTTPPVTIRPDNRCLVVNNSVSDWRRSFVIGCSREDEERRRPTVPLAPFGA
Sbjct: 1   MELCSVSTYSTTPPVTIRPDNRCLVVNNSVSDWRRSFVIGCSREDEERRRPTVPLAPFGA 60

Query: 81  GEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120
           GEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR
Sbjct: 61  GEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 99

[Close]

BLAST of MELO3C020524 vs. NCBI nr
Match: gi|778665222|ref|XP_011648516.1| (PREDICTED: basic leucine zipper 34-like [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1


Query: 21  MELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVIGCSREDEERRRPTVPLAPFG 80
           MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVIGCSRED+ERRRP VPL PFG
Sbjct: 1   MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 60

Query: 81  AGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120
           AGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR
Sbjct: 61  AGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 99

The following BLAST results are available for this feature:

BLAST of MELO3C020524 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXP6_CUCSA	3.6e-57	90.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533410 PE=4 SV=1	[more]

BLAST of MELO3C020524 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210738\|gb\|KGN65834.1\|	5.2e-57	90.24	hypothetical protein Csa_1G533410 [Cucumis sativus]	[more]
gi\|659115444\|ref\|XP_008457560.1\|	7.2e-51	100.00	PREDICTED: transcription factor VIP1-like [Cucumis melo]	[more]
gi\|778665222\|ref\|XP_011648516.1\|	3.6e-42	90.00	PREDICTED: basic leucine zipper 34-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009410	response to xenobiotic stimulus
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020524T1	MELO3C020524T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C020524	Csa1G533410	Cucumber (Chinese Long) v2	cumeB028
MELO3C020524	Cla008141	Watermelon (97103) v1	mewmB146
MELO3C020524	ClCG03G000470	Watermelon (Charleston Gray)	mewcgB149
MELO3C020524	Cla97C03G051270	Watermelon (97103) v2	mewmbB153
MELO3C020524	Bhi08G000395	Wax gourd	mewgoB161
MELO3C020524	CSPI01G24140	Wild cucumber (PI 183967)	cpimeB025
MELO3C020524	CmaCh01G006930	Cucurbita maxima (Rimu)	cmameB391
MELO3C020524	CmoCh13G000380	Cucurbita moschata (Rifu)	cmomeB181
MELO3C020524	CmoCh01G007180	Cucurbita moschata (Rifu)	cmomeB382
MELO3C020524	Cp4.1LG02g11990	Cucurbita pepo (Zucchini)	cpemeB496
MELO3C020524	CsGy1G023630	Cucumber (Gy14) v2	cgybmeB023
MELO3C020524	Carg07050	Silver-seed gourd	carmeB0522
MELO3C020524	CsaV3_1G036450	Cucumber (Chinese Long) v3	cucmeB025

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C020524	Silver-seed gourd	carmeB0618
MELO3C020524	Silver-seed gourd	carmeB0663
MELO3C020524	Cucumber (Chinese Long) v3	cucmeB465
MELO3C020524	Watermelon (97103) v2	mewmbB160
MELO3C020524	Wax gourd	mewgoB152
MELO3C020524	Melon (DHL92) v3.5.1	memeB069
MELO3C020524	Cucumber (Gy14) v1	cgymeB220
MELO3C020524	Cucumber (Gy14) v1	cgymeB255
MELO3C020524	Cucurbita maxima (Rimu)	cmameB194
MELO3C020524	Cucurbita maxima (Rimu)	cmameB666
MELO3C020524	Cucurbita maxima (Rimu)	cmameB667
MELO3C020524	Cucurbita maxima (Rimu)	cmameB669
MELO3C020524	Cucurbita moschata (Rifu)	cmomeB658
MELO3C020524	Cucurbita moschata (Rifu)	cmomeB661
MELO3C020524	Cucurbita moschata (Rifu)	cmomeB662
MELO3C020524	Wild cucumber (PI 183967)	cpimeB454
MELO3C020524	Cucumber (Chinese Long) v2	cumeB459
MELO3C020524	Watermelon (Charleston Gray)	mewcgB155
MELO3C020524	Watermelon (97103) v1	mewmB175
MELO3C020524	Cucurbita pepo (Zucchini)	cpemeB390
MELO3C020524	Cucurbita pepo (Zucchini)	cpemeB479
MELO3C020524	Bottle gourd (USVL1VR-Ls)	lsimeB174
MELO3C020524	Bottle gourd (USVL1VR-Ls)	lsimeB245
MELO3C020524	Cucumber (Gy14) v2	cgybmeB398