CSPI01G24140 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G24140
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 19541619 .. 19541987 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATTATCATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACCTAATGGAACTGTGTTCGGTAAGTACTATTTCTACTACTCCGCCGGTTACGATCGTTCCTGACAACCGTCGTTTAGTCATCAACAATAATTCGGTGTCGGACTGGCGGAGATCCTTTGTGATTGGTTGCTCGAGGGAAGATGACGAACGGAGGAGGCCGGCAGTGCCGCTGCCTCCGTTTGGTGCTGGAGAGCTGAGCTCTGGTGACGGGTTGGGGAATGTCGACGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCCAACATGGATCCAAGAAAACTCAAACGGTTTGAACCCTAA

mRNA sequence

ATGGAAGATTATCATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACCTAATGGAACTGTGTTCGGTAAGTACTATTTCTACTACTCCGCCGGTTACGATCGTTCCTGACAACCGTCGTTTAGTCATCAACAATAATTCGGTGTCGGACTGGCGGAGATCCTTTGTGATTGGTTGCTCGAGGGAAGATGACGAACGGAGGAGGCCGGCAGTGCCGCTGCCTCCGTTTGGTGCTGGAGAGCTGAGCTCTGGTGACGGGTTGGGGAATGTCGACGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCCAACATGGATCCAAGAAAACTCAAACGGTTTGAACCCTAA

Coding sequence (CDS)

ATGGAAGATTATCATTTGCTTCAAAATCAAAACCATCCTCCATGCAACTTCCAGGACCTAATGGAACTGTGTTCGGTAAGTACTATTTCTACTACTCCGCCGGTTACGATCGTTCCTGACAACCGTCGTTTAGTCATCAACAATAATTCGGTGTCGGACTGGCGGAGATCCTTTGTGATTGGTTGCTCGAGGGAAGATGACGAACGGAGGAGGCCGGCAGTGCCGCTGCCTCCGTTTGGTGCTGGAGAGCTGAGCTCTGGTGACGGGTTGGGGAATGTCGACGGCAGAAATAATTCGGAGCAGATCTTGTATGGTCGTAATATTGACCCCAACATGGATCCAAGAAAACTCAAACGGTTTGAACCCTAA
Homology
[Close]
BLAST of CSPI01G24140 vs. TrEMBL
Match: A0A0A0LXP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533410 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 5.6e-66
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI
Sbjct: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60

Query: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKRF 120
           GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKRF
Sbjct: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKRF 120

Query: 121 EP 123
           EP
Sbjct: 121 EP 122

[Close]
BLAST of CSPI01G24140 vs. NCBI nr
Match: gi|700210738|gb|KGN65834.1| (hypothetical protein Csa_1G533410 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 8.0e-66
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60
           MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI
Sbjct: 1   MEDYHLLQNQNHPPCNFQDLMELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVI 60

Query: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKRF 120
           GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKRF
Sbjct: 61  GCSREDDERRRPAVPLPPFGAGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKRF 120

Query: 121 EP 123
           EP
Sbjct: 121 EP 122

[Close]
BLAST of CSPI01G24140 vs. NCBI nr
Match: gi|778665222|ref|XP_011648516.1| (PREDICTED: basic leucine zipper 34-like [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 4.7e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 21  MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 80
           MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG
Sbjct: 1   MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 60

Query: 81  AGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120
           AGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR
Sbjct: 61  AGELSSGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 99

[Close]
BLAST of CSPI01G24140 vs. NCBI nr
Match: gi|659115444|ref|XP_008457560.1| (PREDICTED: transcription factor VIP1-like [Cucumis melo])

HSP 1 Score: 179.5 bits (454), Expect = 3.6e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 21  MELCSVSTISTTPPVTIVPDNRRLVINNNSVSDWRRSFVIGCSREDDERRRPAVPLPPFG 80
           MELCSVST STTPPVTI PDNR LV+ NNSVSDWRRSFVIGCSRED+ERRRP VPL PFG
Sbjct: 1   MELCSVSTYSTTPPVTIRPDNRCLVV-NNSVSDWRRSFVIGCSREDEERRRPTVPLAPFG 60

Query: 81  AGELSS-GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 120
           AGE+SS GDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR
Sbjct: 61  AGEMSSGGDGLGNVDGRNNSEQILYGRNIDPNMDPRKLKR 99

The following BLAST results are available for this feature:
BLAST of CSPI01G24140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G24140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXP6_CUCSA5.6e-66100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G533410 PE=4 SV=1[more]
BLAST of CSPI01G24140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G24140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210738|gb|KGN65834.1|8.0e-66100.00hypothetical protein Csa_1G533410 [Cucumis sativus][more]
gi|778665222|ref|XP_011648516.1|4.7e-50100.00PREDICTED: basic leucine zipper 34-like [Cucumis sativus][more]
gi|659115444|ref|XP_008457560.1|3.6e-4290.00PREDICTED: transcription factor VIP1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G24140.1CSPI01G24140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G24140Cla008141Watermelon (97103) v1cpiwmB023
CSPI01G24140Csa1G533410Cucumber (Chinese Long) v2cpicuB001
CSPI01G24140MELO3C020524Melon (DHL92) v3.5.1cpimeB025
CSPI01G24140ClCG03G000470Watermelon (Charleston Gray)cpiwcgB050
CSPI01G24140MELO3C020524.2Melon (DHL92) v3.6.1cpimedB024
CSPI01G24140CsaV3_1G036450Cucumber (Chinese Long) v3cpicucB000
CSPI01G24140Cla97C03G051270Watermelon (97103) v2cpiwmbB044
CSPI01G24140Bhi08G000395Wax gourdcpiwgoB048
CSPI01G24140CmaCh01G006930Cucurbita maxima (Rimu)cmacpiB430
CSPI01G24140CmoCh01G007180Cucurbita moschata (Rifu)cmocpiB420
CSPI01G24140CmoCh13G000380Cucurbita moschata (Rifu)cmocpiB206
CSPI01G24140Cp4.1LG02g11990Cucurbita pepo (Zucchini)cpecpiB531
CSPI01G24140CsGy1G023630Cucumber (Gy14) v2cgybcpiB002
CSPI01G24140Carg07050Silver-seed gourdcarcpiB0557
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G24140Bottle gourd (USVL1VR-Ls)cpilsiB031
CSPI01G24140Silver-seed gourdcarcpiB0648
CSPI01G24140Silver-seed gourdcarcpiB0691
CSPI01G24140Cucumber (Gy14) v1cgycpiB224
CSPI01G24140Cucurbita maxima (Rimu)cmacpiB220
CSPI01G24140Cucurbita maxima (Rimu)cmacpiB697
CSPI01G24140Cucurbita maxima (Rimu)cmacpiB699
CSPI01G24140Cucurbita moschata (Rifu)cmocpiB691
CSPI01G24140Cucurbita moschata (Rifu)cmocpiB692
CSPI01G24140Cucurbita pepo (Zucchini)cpecpiB382
CSPI01G24140Cucurbita pepo (Zucchini)cpecpiB507