CmoCh11G016270 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G016270
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DSR6
Location	Cmo_Chr11 : 11596033 .. 11598804 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTTTTTCAATCTCTCTGCTCCGTTTCCCTCTCTTTCTCTCTCCTAAACCCCCATTTTCAGTCCCGGATGATCACAGTGGCATTAGGTTAAGAATCAAACAACCAAATTCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGGTATTACTTCTTTTTCTTCTTCTTGATTTTCTACAACTGTAATTCCGTTTGTTTTGTTCTTTTTCTTTGTTACTTTTGTGTTGATTGATGAACTTTGATGCTTTGAAATTAGTGGTTAGGACCATTTTTGCCTACTGATCTTCTGAAGCGAAGTCATGTGCGATCTAAAGTGTTTGGTTCTTTCTTTTTCTAGTTGAATATCTTATGGAATCATTGCCTTTTGGACATATTGTTTAATTGGATTGATGATGTTGATCTAGGTCCCATTTGTTTTGTATTATCTAAATCTTCAGAGATTGATGAACAGAGGAATTTTACTTTTTCCCCCTTTAATTGTTTTTAATAATTGTTCATTAAAATTAGAGAAATCCTAGATTTCCTTTCTGTCTCTTGTGGCTTGATGATCAAATTTATTAGAAGGAATTTGGGATTGTTCTGTGTTCTGAGATGAAGAAATCATTCCTTTGTTCATTGGATGCTCTGTTTCCTGTGAAGTTCTATGTATTGTTCTGAGTGGATTGTGGTTGATTATTGAACTGCTATAAGAAAAAAAAGTCTCATAGAGCTTTGTTACTATAGTTTTCTCGCTTTTTATACGAGAAATTATTAGAGGAAGCTGTCACTATGTGATGTTCGATTTCGGATGGTTGGATGTAGGAAAAATGCTTCAAAGATATTTCAAATCTTGTATTTAGACCCGCGGTTTTTCGAATCCTTACCTAACAATTATTAAGAGGTTGTGAGGACAATATCTTCTAGCAGTGGGCTTGAGCTGTTACAAATGGTATCAGAGCAAGATACCGGGCAGTGCGCCAGCTAGGACGCTGGGCCCCGAAGGGGGTGGATTATGAGACCCCACGTCAATTGGAGAGAGAAACGAGTGCTAGCGAGGACGCTGGGCCTCGAAGGGGGTGGATTGAGATCCCGCATCGATTGGAAAGAAGAACGAGTGTCAGCGAGGACGTTGGACCCTGAAGAGGGGTGGATTGTGAGATCCCACATTGGTTGAAGAGGGGAACGAAGCATTTTTCATAAGAATGTGGAAACCTCTCCTTAGCATATGCGTTTTTAAAACCTTGAGGAGAAGCCCGAAAGGGAAAGCCAAAAGAGGACAATATCTGCTAGCGGTGGGCTTAGGGTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTTAGGCTGTTACAGAAGTAGAAGTAGTCTTTGTTACAGAAGTAGAAGTAGTCTTTGTTATAGGGATTGCTATCCAACAGAAGTAGAAGTAGTCTTTGTTATAGGGATTGCTATCTTTGATGGATAGTTTCTTGTTTCTCTTAATTTCACATGAATCATGCTAGGGTTCATGTGAAGTGAAGAATGCTAACTCGAAAAACTTTTCACCAAAAATCGAACCCAGTAACTCGAAAAACTTCTCGTGTCTTTTTGGTATGATTTTTCAATCCCATGGTTTGTTTAGGCTGCTATTGCTCGTTTTTTTTAATATCCGTGAATGTTCGGGCCTCAACTATTCTCACATGACAACTGTCTCATCCTAGCATGTTTGATTGCTAAAGTAACTCGTAGGATATTAAATCCTAAGTAGATGGTCACTCCGACTTAAACTCGTTCTTTCTAAGCCCTTCACAATTTATACGACCCTTATTGATCACTAGGCGGCGTTCATATGATTGAATTCTTTCTTTTATGTCCTTGAATTTATTCCTTATGTTTTGGGTAATTTGTTCTATGTTGGCTGTTCTATGAAAGAAGTTGACAATAGAACTGTGCTGTTTTCATAGGTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGGTAAGTAGACATTTAAAACGTTCGTTTACTCTAATAGATCATATCATATTAGAAATGATCTTATAGGTTTCCGAACTTTCAATCTTTCAATTTTGTGAGCTTAAAGAATTCTTTTTATGCTAGTTGCATTTTGATCTCTTCTCCTAAAAGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA

mRNA sequence

CAACTTTTTCAATCTCTCTGCTCCGTTTCCCTCTCTTTCTCTCTCCTAAACCCCCATTTTCAGTCCCGGATGATCACAGTGGCATTAGGTTAAGAATCAAACAACCAAATTCATCAATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA

Coding sequence (CDS)

ATGGGTTCCTGTGTTTCAATCCATAGAAATTCCGATTCCGCTCTGAAATTCAGGCTCTCAATTGGGTCTAAAACGAATGAAATGGTAATTCCGCCGTCGCCGATCAAGGATAACAACGCCCTGATCAGCGGCGCTGGCGGTGCTGGCGGTGTTGACGGTGAAGGCGGTGTAGGCGGTGTTTTTGTCAAATCTCAGAGGTCTCCTTCTCAATTAGCAAAGATGAAGCGTTTTTCGATTCCCGAGGCTGGTTGGATTCGGATTGTGAAGATGATTTCTATAGTGTCAATGGTGTATTCGATTGCAATGGCTGCAGACTTCACCCCTTCACGAGGAAACACTCCGGTACACCCCAGCTTCTCCTCTGGTACTCCTCGAATCAACCAAGTTCATGTCATCGACAATCAAACTCCGATCGCCGTTCCCGAACCATCACCCACAGGAAAGAAGAAGCTAGCTGAACTATTCAGGGACAGCTCCAGAAAAGACAGTGACATACAAGCCAAACCAACTCTAAACGAACTCGCGTTACAGTCGAATCCCGAAAAGCCTCACGTGTCAAGAACAAACTCTGTATGCAGCAGCAGCGAGAGGACCTCTAATGGAGATGTCTGGACTGAGAAGGAACGGCCAGTTGGATCTGCACAATGCTGCCTCCCTAGCTTGGGACCATGCCGTAGCTTCGGTGACCGGAGGAAGAAGGCGCGTCCAGCCATAGTTGTATAA

Homology

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BLAST of CmoCh11G016270 vs. TrEMBL
Match: A0A0A0LB55_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588480 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 4.4e-75
Identity = 155/240 (64.58%), Postives = 170/240 (70.83%), Query Frame = 1


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSC SIHRN DSA+KF+LS+ SKT +M IPPSPIK NN  I+                V
Sbjct: 1   MGSCASIHRNPDSAMKFKLSLASKTTDMEIPPSPIKQNNTPINPT--------------V 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           F+KSQ SPS L           GW+            YS+    DFTPSRGNTPVH SFS
Sbjct: 61  FLKSQTSPSHLGSKDEAFFDSRGWLDS----DCEDDFYSVN--GDFTPSRGNTPVHSSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVH ID+QTPI +PEPSPTGKK+LAELFR+SSR  +D QAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHGIDDQTPITIPEPSPTGKKRLAELFRESSRNGTDRQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           E P++S TNSVC SSERT NGDVW EKERP GS QCCLPSLG C SFGDRRKKA PAI V
Sbjct: 181 ETPYISGTNSVC-SSERTPNGDVWGEKERPFGSVQCCLPSLGSCHSFGDRRKKASPAIAV 219

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BLAST of CmoCh11G016270 vs. TrEMBL
Match: F6I5J9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00120 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.5e-38
Identity = 110/258 (42.64%), Postives = 148/258 (57.36%), Query Frame = 1


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVS+HRN  SA+K ++S GSK +++VIP SPIKD+ ++            E  +GG+
Sbjct: 1   MGSCVSVHRNPHSAMKLKVSFGSKADKLVIP-SPIKDHPSI-----------AEPPIGGL 60

Query: 61  FVKSQRSPSQ-LAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSF 120
             K+Q SPSQ +   + F   E  +      +   S  +  ++  DFTPSRGNTPVHP+ 
Sbjct: 61  SHKAQWSPSQPITPFRDFGSKEEIFFDSQPWLESDSDDFH-SVNGDFTPSRGNTPVHPNV 120

Query: 121 SSGTPRINQVHVIDNQTPIAVPEPSPTG-KKKLAELFRDSSRKDSD-------------- 180
           S GTP  N+    +N+ P ++P PSPTG KKKLAELF +S R D D              
Sbjct: 121 SIGTPHANKAP-FENRVPASIPTPSPTGRKKKLAELFEESIRNDMDGNDENILGKQNMSN 180

Query: 181 --IQAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLG 240
             ++ K T+ +   +S    P  S  NSVCS   RT NGD  +EKE+P+ S QCCLPSL 
Sbjct: 181 GKMEVKRTILDFPPESANGTPLASGPNSVCSGG-RTPNGDFKSEKEKPLRSTQCCLPSLR 240

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BLAST of CmoCh11G016270 vs. TrEMBL
Match: M5XDF1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010921mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.7e-37
Identity = 110/244 (45.08%), Postives = 141/244 (57.79%), Query Frame = 1


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSIHR++DSA+K RLS GSKT+++VIPP P+ D  A           +G+  +   
Sbjct: 1   MGSCVSIHRDADSAMKLRLSFGSKTDKLVIPPFPVNDKLA-----------NGDRPINDP 60

Query: 61  FVKSQRSPSQ-LAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSF 120
            +KS  SPS+ +   + +   E  +      +         ++  DFTPSRGNTPVH S 
Sbjct: 61  PLKSHWSPSRSVTAFRDYGSREEAFFDTKPWLDSDCEDDFYSVNGDFTPSRGNTPVHHSL 120

Query: 121 SSGTPRINQVHVIDNQTPIAVPEPSPTGKKK-LAELFRDSSRKDSDIQ--AKPTLNELAL 180
           S G+ R+N+    D      +P PSPT KKK L ELF++S + D D     KPT   L  
Sbjct: 121 SIGSSRMNKTPFEDR-----IPGPSPTEKKKKLIELFQESLKNDDDDDNAVKPTTPSLPP 180

Query: 181 QSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARP 240
           +S    P V  TNSV SSSERT+NGDV TEKE+P+ S QCCLPSL  CRS   +RKK  P
Sbjct: 181 KSVNGTPSVPATNSV-SSSERTANGDVATEKEKPIRSVQCCLPSLVSCRS-SSQRKKMSP 226

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BLAST of CmoCh11G016270 vs. TrEMBL
Match: B9RBK4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677780 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 104/258 (40.31%), Postives = 142/258 (55.04%), Query Frame = 1


Query: 1   MGSCVSIHRNS-DSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGG 60
           MGSC S+H+ + +SA+K  +S GSK + +VIP SPIKD +  ++        D  G    
Sbjct: 1   MGSCASVHKGTPESAMKLGVSFGSKKDNLVIPESPIKDKH--VNDHTPIKTFDDHGSKDE 60

Query: 61  VFVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSF 120
            F  S+       +   FS+                         DFTPSRGNTPVH +F
Sbjct: 61  TFFDSRAWLDSDCEDDFFSVN-----------------------GDFTPSRGNTPVHHNF 120

Query: 121 SSGTPRINQVHVIDNQ-TPIAVPEPSPTGKKKLAELFRDSSRKDSDI------------- 180
           S GTP+IN+  +     TP ++PEPSPTGKK+L+ELFR+S R++ +              
Sbjct: 121 SMGTPKINKTTLEGRPPTPGSIPEPSPTGKKRLSELFRESLREEQEADKLDSSRMQNIGN 180

Query: 181 ---QAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLG 240
              + K T+ ++  +S    P++S  NSVCSS ERT+NGD   E+E+ + SAQCCLPSL 
Sbjct: 181 GKTEVKQTILDVLPKSASGTPYISGANSVCSS-ERTANGDALIEREKSIKSAQCCLPSLI 232

[Close]

BLAST of CmoCh11G016270 vs. TrEMBL
Match: A0A061ECX1_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_017164 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.2e-36
Identity = 111/263 (42.21%), Postives = 150/263 (57.03%), Query Frame = 1


Query: 1   MGSCVSIHRNS-DSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGG 60
           MGSCVS+H++S +SA+K  LS GSKT++++IPPSP+K+  A                   
Sbjct: 1   MGSCVSVHKSSQESAMKLGLSFGSKTDKLIIPPSPVKEKPAANCD--------------- 60

Query: 61  VFVKSQRSPSQL----AKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPV 120
            F  + +SPS L    +K + F    A W+         S+        DFTPSRGNTPV
Sbjct: 61  -FALNVQSPSTLKDLGSKDETFFDSRA-WLDSDCEDDFFSV------NGDFTPSRGNTPV 120

Query: 121 HPSFSSGTPRINQVHVIDNQTPIAVPEPSPTGKKK-LAELFRDSSRKDSD---------- 180
           H SF+ GTP++ +    +  +P +V E SPTGKKK L ELFR+S R+D D          
Sbjct: 121 HHSFAMGTPQVKKG--TEEGSPGSVSETSPTGKKKKLVELFRESIREDQDVNELNTPRNQ 180

Query: 181 ------IQAKPTLNELALQSNPE-KPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCC 240
                 I+AKPT+ +L    + +  P+VS  NS+C+S ERT+NGD    KE+P  S QCC
Sbjct: 181 DLANGKIEAKPTIQDLLPPKSADGTPYVSGANSLCTS-ERTANGDNPIFKEKPFKSVQCC 237

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BLAST of CmoCh11G016270 vs. TAIR10
Match: AT3G27210.1 (AT3G27210.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.3e-06
Identity = 45/131 (34.35%), Postives = 59/131 (45.04%), Query Frame = 1


Query: 105 DFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSPTG-KKKLAELFRDSSRKDS 164
           DFTPS GNTP   SFS   PR + +   + +       P+P   +KKL ELFRDS R++ 
Sbjct: 106 DFTPSLGNTP-KSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIREER 165

Query: 165 DIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGP 224
           +        E    S    P++S  N    S E         EK++       CLP    
Sbjct: 166 E--------ESGSSSAISTPYLSGAN----SREFNDTAIEKEEKKKSNWHHHRCLPGFSS 223

Query: 225 C-RSFGDRRKK 234
           C  SF +RRKK
Sbjct: 226 CGGSFMERRKK 223

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BLAST of CmoCh11G016270 vs. TAIR10
Match: AT3G01860.1 (AT3G01860.1 unknown protein)

HSP 1 Score: 48.1 bits (113), Expect = 8.6e-06
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 1


Query: 100 IAMAADFTPSRGNTPVHPSFSSGTPRINQVHVIDNQTPIAVPEPSPT-GKKKLAELFRDS 159
           +++  +FTPSRG TPVH  F   TP   +    +N+      E SPT  KK+L ELF+++
Sbjct: 83  MSVGGEFTPSRGTTPVHHKFCDQTPHQGE----ENKHGEEEEEASPTDNKKRLLELFKET 142

Query: 160 SRKDSDIQAKPTLNELALQSNPEKPHVSRTNSVCSSSERT--SNGDVWTEKERPVGSAQC 219
             ++ + +      E  +     +  +     V SS+  T  +N     +K + V SA  
Sbjct: 143 QDEEDEEE------EDYVAEGKARACLWIRTPVRSSAPATPYNNNKERQQKFKRVRSAAL 202

Query: 220 --CLPSLGPCRSFGDRRK 233
             C+P L  C SF DRR+
Sbjct: 203 GRCVPRLVSCSSFTDRRR 210

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: gi|778681695|ref|XP_011651566.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 6.3e-75
Identity = 155/240 (64.58%), Postives = 170/240 (70.83%), Query Frame = 1


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSC SIHRN DSA+KF+LS+ SKT +M IPPSPIK NN  I+                V
Sbjct: 1   MGSCASIHRNPDSAMKFKLSLASKTTDMEIPPSPIKQNNTPINPT--------------V 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           F+KSQ SPS L           GW+            YS+    DFTPSRGNTPVH SFS
Sbjct: 61  FLKSQTSPSHLGSKDEAFFDSRGWLDS----DCEDDFYSVN--GDFTPSRGNTPVHSSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVH ID+QTPI +PEPSPTGKK+LAELFR+SSR  +D QAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHGIDDQTPITIPEPSPTGKKRLAELFRESSRNGTDRQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           E P++S TNSVC SSERT NGDVW EKERP GS QCCLPSLG C SFGDRRKKA PAI V
Sbjct: 181 ETPYISGTNSVC-SSERTPNGDVWGEKERPFGSVQCCLPSLGSCHSFGDRRKKASPAIAV 219

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: gi|659098331|ref|XP_008450086.1| (PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 2.4e-74
Identity = 155/240 (64.58%), Postives = 168/240 (70.00%), Query Frame = 1


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSC SIHRN DSA+KF+LS+ SKTN+M IPPSPIK NN  I+                V
Sbjct: 1   MGSCASIHRNPDSAMKFKLSLASKTNDMAIPPSPIKQNNTPINPT--------------V 60

Query: 61  FVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSFS 120
           F KSQ SPS L           GW+            YS+    DFTPSRGNTP H SFS
Sbjct: 61  FHKSQTSPSHLGSKDEAFFDSRGWLDS----DCEDDFYSVN--GDFTPSRGNTPTHSSFS 120

Query: 121 SGTPRINQVHVIDNQTPIAVPEPSPTGKKKLAELFRDSSRKDSDIQAKPTLNELALQSNP 180
           SGTPRINQVH ID+QTPI +PEPSPTGKKKLA+LFR+SSR  +D QAKPTLNELALQSNP
Sbjct: 121 SGTPRINQVHGIDDQTPITIPEPSPTGKKKLADLFRESSRNGTDRQAKPTLNELALQSNP 180

Query: 181 EKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARPAIVV 240
           E P+VS TNSVC SSERT NGDVW EKERP GS QCCLPSL  C SFGDRRKKA PAI V
Sbjct: 181 ETPYVSGTNSVC-SSERTPNGDVWAEKERPFGSVQCCLPSLRSCHSFGDRRKKASPAIAV 219

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: gi|225452132|ref|XP_002262897.1| (PREDICTED: uncharacterized protein At3g27210 [Vitis vinifera])

HSP 1 Score: 167.2 bits (422), Expect = 3.6e-38
Identity = 110/258 (42.64%), Postives = 148/258 (57.36%), Query Frame = 1


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVS+HRN  SA+K ++S GSK +++VIP SPIKD+ ++            E  +GG+
Sbjct: 1   MGSCVSVHRNPHSAMKLKVSFGSKADKLVIP-SPIKDHPSI-----------AEPPIGGL 60

Query: 61  FVKSQRSPSQ-LAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSF 120
             K+Q SPSQ +   + F   E  +      +   S  +  ++  DFTPSRGNTPVHP+ 
Sbjct: 61  SHKAQWSPSQPITPFRDFGSKEEIFFDSQPWLESDSDDFH-SVNGDFTPSRGNTPVHPNV 120

Query: 121 SSGTPRINQVHVIDNQTPIAVPEPSPTG-KKKLAELFRDSSRKDSD-------------- 180
           S GTP  N+    +N+ P ++P PSPTG KKKLAELF +S R D D              
Sbjct: 121 SIGTPHANKAP-FENRVPASIPTPSPTGRKKKLAELFEESIRNDMDGNDENILGKQNMSN 180

Query: 181 --IQAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLG 240
             ++ K T+ +   +S    P  S  NSVCS   RT NGD  +EKE+P+ S QCCLPSL 
Sbjct: 181 GKMEVKRTILDFPPESANGTPLASGPNSVCSGG-RTPNGDFKSEKEKPLRSTQCCLPSLR 240

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: gi|595942607|ref|XP_007215921.1| (hypothetical protein PRUPE_ppa010921mg [Prunus persica])

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37
Identity = 110/244 (45.08%), Postives = 141/244 (57.79%), Query Frame = 1


Query: 1   MGSCVSIHRNSDSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGGV 60
           MGSCVSIHR++DSA+K RLS GSKT+++VIPP P+ D  A           +G+  +   
Sbjct: 1   MGSCVSIHRDADSAMKLRLSFGSKTDKLVIPPFPVNDKLA-----------NGDRPINDP 60

Query: 61  FVKSQRSPSQ-LAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSF 120
            +KS  SPS+ +   + +   E  +      +         ++  DFTPSRGNTPVH S 
Sbjct: 61  PLKSHWSPSRSVTAFRDYGSREEAFFDTKPWLDSDCEDDFYSVNGDFTPSRGNTPVHHSL 120

Query: 121 SSGTPRINQVHVIDNQTPIAVPEPSPTGKKK-LAELFRDSSRKDSDIQ--AKPTLNELAL 180
           S G+ R+N+    D      +P PSPT KKK L ELF++S + D D     KPT   L  
Sbjct: 121 SIGSSRMNKTPFEDR-----IPGPSPTEKKKKLIELFQESLKNDDDDDNAVKPTTPSLPP 180

Query: 181 QSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLGPCRSFGDRRKKARP 240
           +S    P V  TNSV SSSERT+NGDV TEKE+P+ S QCCLPSL  CRS   +RKK  P
Sbjct: 181 KSVNGTPSVPATNSV-SSSERTANGDVATEKEKPIRSVQCCLPSLVSCRS-SSQRKKMSP 226

[Close]

BLAST of CmoCh11G016270 vs. NCBI nr
Match: gi|255536943|ref|XP_002509538.1| (PREDICTED: uncharacterized protein At3g27210 [Ricinus communis])

HSP 1 Score: 160.6 bits (405), Expect = 3.4e-36
Identity = 104/258 (40.31%), Postives = 142/258 (55.04%), Query Frame = 1


Query: 1   MGSCVSIHRNS-DSALKFRLSIGSKTNEMVIPPSPIKDNNALISGAGGAGGVDGEGGVGG 60
           MGSC S+H+ + +SA+K  +S GSK + +VIP SPIKD +  ++        D  G    
Sbjct: 1   MGSCASVHKGTPESAMKLGVSFGSKKDNLVIPESPIKDKH--VNDHTPIKTFDDHGSKDE 60

Query: 61  VFVKSQRSPSQLAKMKRFSIPEAGWIRIVKMISIVSMVYSIAMAADFTPSRGNTPVHPSF 120
            F  S+       +   FS+                         DFTPSRGNTPVH +F
Sbjct: 61  TFFDSRAWLDSDCEDDFFSVN-----------------------GDFTPSRGNTPVHHNF 120

Query: 121 SSGTPRINQVHVIDNQ-TPIAVPEPSPTGKKKLAELFRDSSRKDSDI------------- 180
           S GTP+IN+  +     TP ++PEPSPTGKK+L+ELFR+S R++ +              
Sbjct: 121 SMGTPKINKTTLEGRPPTPGSIPEPSPTGKKRLSELFRESLREEQEADKLDSSRMQNIGN 180

Query: 181 ---QAKPTLNELALQSNPEKPHVSRTNSVCSSSERTSNGDVWTEKERPVGSAQCCLPSLG 240
              + K T+ ++  +S    P++S  NSVCSS ERT+NGD   E+E+ + SAQCCLPSL 
Sbjct: 181 GKTEVKQTILDVLPKSASGTPYISGANSVCSS-ERTANGDALIEREKSIKSAQCCLPSLI 232

The following BLAST results are available for this feature:

BLAST of CmoCh11G016270 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh11G016270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB55_CUCSA	4.4e-75	64.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G588480 PE=4 SV=1	[more]
F6I5J9_VITVI	2.5e-38	42.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0171g00120 PE=4 SV=...	[more]
M5XDF1_PRUPE	4.7e-37	45.08	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010921mg PE=4 SV=1	[more]
B9RBK4_RICCO	2.4e-36	40.31	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677780 PE=4 SV=1	[more]
A0A061ECX1_THECC	5.2e-36	42.21	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_017164 PE=4 SV=1	[more]

BLAST of CmoCh11G016270 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G27210.1	2.3e-06	34.35	unknown protein	[more]
AT3G01860.1	8.6e-06	31.16	unknown protein	[more]

BLAST of CmoCh11G016270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778681695\|ref\|XP_011651566.1\|	6.3e-75	64.58	PREDICTED: uncharacterized protein At3g27210-like [Cucumis sativus]	[more]
gi\|659098331\|ref\|XP_008450086.1\|	2.4e-74	64.58	PREDICTED: uncharacterized protein At3g27210-like [Cucumis melo]	[more]
gi\|225452132\|ref\|XP_002262897.1\|	3.6e-38	42.64	PREDICTED: uncharacterized protein At3g27210 [Vitis vinifera]	[more]
gi\|595942607\|ref\|XP_007215921.1\|	6.8e-37	45.08	hypothetical protein PRUPE_ppa010921mg [Prunus persica]	[more]
gi\|255536943\|ref\|XP_002509538.1\|	3.4e-36	40.31	PREDICTED: uncharacterized protein At3g27210 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G016270.1	CmoCh11G016270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34280	FAMILY NOT NAMED	coord: 72..240 score: 1.3E-42coord: 2..46 score: 1.3
None	No IPR available	PANTHER	PTHR34280:SF2	SUBFAMILY NOT NAMED	coord: 72..240 score: 1.3E-42coord: 2..46 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G016270	Cucsa.054240	Cucumber (Gy14) v1	cgycmoB0061
CmoCh11G016270	CmaCh11G014920	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G016270	CmaCh14G007060	Cucurbita maxima (Rimu)	cmacmoB243
CmoCh11G016270	Cla004058	Watermelon (97103) v1	cmowmB102
CmoCh11G016270	Csa3G588480	Cucumber (Chinese Long) v2	cmocuB110
CmoCh11G016270	MELO3C014870	Melon (DHL92) v3.5.1	cmomeB129
CmoCh11G016270	ClCG05G013370	Watermelon (Charleston Gray)	cmowcgB112
CmoCh11G016270	CSPI03G25650	Wild cucumber (PI 183967)	cmocpiB112
CmoCh11G016270	Lsi07G014670	Bottle gourd (USVL1VR-Ls)	cmolsiB139
CmoCh11G016270	Cp4.1LG03g06940	Cucurbita pepo (Zucchini)	cmocpeB124
CmoCh11G016270	Cp4.1LG04g05870	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G016270	MELO3C014870.2	Melon (DHL92) v3.6.1	cmomedB137
CmoCh11G016270	CsaV3_3G027170	Cucumber (Chinese Long) v3	cmocucB0126
CmoCh11G016270	Bhi01G001595	Wax gourd	cmowgoB0105
CmoCh11G016270	CsGy3G024080	Cucumber (Gy14) v2	cgybcmoB264
CmoCh11G016270	Carg09672	Silver-seed gourd	carcmoB0589
CmoCh11G016270	Carg15571	Silver-seed gourd	carcmoB0502

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh11G016270	CmoCh14G007250	Cucurbita moschata (Rifu)	cmocmoB092

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G016270	Cucumber (Chinese Long) v3	cmocucB0094
CmoCh11G016270	Watermelon (97103) v2	cmowmbB114
CmoCh11G016270	Watermelon (97103) v2	cmowmbB124
CmoCh11G016270	Cucurbita moschata (Rifu)	cmocmoB042
CmoCh11G016270	Cucurbita moschata (Rifu)	cmocmoB079
CmoCh11G016270	Cucurbita maxima (Rimu)	cmacmoB116
CmoCh11G016270	Watermelon (Charleston Gray)	cmowcgB120
CmoCh11G016270	Cucurbita pepo (Zucchini)	cmocpeB111
CmoCh11G016270	Cucurbita pepo (Zucchini)	cmocpeB131
CmoCh11G016270	Bottle gourd (USVL1VR-Ls)	cmolsiB133
CmoCh11G016270	Cucumber (Gy14) v2	cgybcmoB032
CmoCh11G016270	Melon (DHL92) v3.6.1	cmomedB120
CmoCh11G016270	Silver-seed gourd	carcmoB0495
CmoCh11G016270	Silver-seed gourd	carcmoB1404