CmoCh11G001660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G001660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRWP-RK domain-containing transcription factor
LocationCmo_Chr11 : 818859 .. 819737 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACCCTTTTCCTTTGTCATGCCATCTTTCCCCTCTCCATTTCAGGTGAGTTTTATCAACTTTCATTGTTCATTTAGTCTTCGTTTCTCATTTCACTTAGAACCTACAATTCTGCATTGAATAGGAACTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCAATAACACCATTATATCAGGTATTCATTACATTACATTGCTCTTGATTATGATTATATAGTTGTCATTGAATGACAGAATCTTTTTGGCTCTGCAGAAGATGGTGGAGAAAATGAAAAGAAGGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGCGCGGAGAAAGGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGCTGATGAGCCTCCAAACGCTAATCAGGAATGTGAAGGAGCTTGAGAAGGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGGCCAGATTTACAGTTGGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACAAACAACTCCTCAGCCACCAGGGTTCATCAGGATGATGATGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA

mRNA sequence

ATGGACCCTTTTCCTTTGTCATGCCATCTTTCCCCTCTCCATTTCAGGAACTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCAATAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAAGGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGCGCGGAGAAAGGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGCTGATGAGCCTCCAAACGCTAATCAGGAATGTGAAGGAGCTTGAGAAGGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGGCCAGATTTACAGTTGGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACAAACAACTCCTCAGCCACCAGGGTTCATCAGGATGATGATGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA

Coding sequence (CDS)

ATGGACCCTTTTCCTTTGTCATGCCATCTTTCCCCTCTCCATTTCAGGAACTGCAATTTTGGGTTTCAAGACAGCATTTTTGACGTTGTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTCTAAAGGATATTGAACCCAATAACACCATTATATCAGAAGATGGTGGAGAAAATGAAAAGAAGGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGCGCGGAGAAAGGAGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGCTGATGAGCCTCCAAACGCTAATCAGGAATGTGAAGGAGCTTGAGAAGGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGGCCAGATTTACAGTTGGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACAAACAACTCCTCAGCCACCAGGGTTCATCAGGATGATGATGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA
Homology
[Close]
BLAST of CmoCh11G001660 vs. Swiss-Prot
Match: RKD2_ARATH (Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 2.5e-39
Identity = 96/170 (56.47%), Postives = 120/170 (70.59%), Query Frame = 1 

Query: 82  SSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIR 141
           SS+P+  LS++T+S YF+MPI+QAA  LNVGLTLLK+RCRELGIRRWPHRKLMSL TLI 
Sbjct: 129 SSAPTT-LSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLIS 188

Query: 142 NVKELEK----EDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRL 201
           NVKEL+K    E+  KL+  LE+LE EK+ +E+ PDL+ +D TKRLRQACFKAN+K+K+ 
Sbjct: 189 NVKELQKMEGEENAEKLQDALEMLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKRKKK 248

Query: 202 SGTNN--------SSATRVHQDDDEE----EEDEEMKYLLADCSFSFTGG 236
               +        SS+  V  D+  +    E DEEMKYLL   S  FT G
Sbjct: 249 RSLKSDQSQVPSCSSSGSVPSDESVDEAGMESDEEMKYLLCGFSSEFTSG 297

[Close]
BLAST of CmoCh11G001660 vs. Swiss-Prot
Match: RKD1_ARATH (Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.3e-39
Identity = 92/132 (69.70%), Postives = 107/132 (81.06%), Query Frame = 1 

Query: 74  KRKWRGE--RSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHR 133
           KR+ R E   S S SK LS++TIS YF+MPI+QAA+ELN+GLTLLKKRCRELGI+RWPHR
Sbjct: 111 KRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHR 170

Query: 134 KLMSLQTLIRNVKELEKEDGV----KLRHVLEILENEKKLMEERPDLQLEDNTKRLRQAC 193
           KLMSLQ LI NVKELEK +G     KLR+ LE LE EKK +E+ PDL+ ED TKRLRQAC
Sbjct: 171 KLMSLQKLISNVKELEKMEGEENEDKLRNALEKLEKEKKTIEKLPDLKFEDKTKRLRQAC 230

Query: 194 FKANYKKKRLSG 200
           FKAN+K+KR SG
Sbjct: 231 FKANHKRKRRSG 242

[Close]
BLAST of CmoCh11G001660 vs. Swiss-Prot
Match: RKD3_ARATH (Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-30
Identity = 79/160 (49.38%), Postives = 108/160 (67.50%), Query Frame = 1 

Query: 48  EPNNTIISEDGGENEKKGLERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWMPISQAAK 107
           +PN   I  +     K+   +K    KR++R +        +SR+ + +YF+MPI++AAK
Sbjct: 121 DPNMEQILHEDVNTMKEKTSQKRIIMKRRYRED---GVINNMSREMMKQYFYMPITKAAK 180

Query: 108 ELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKEL-----EKEDGVKLRHVLEILE 167
           ELN+G+TLLKKRCRELGI RWPHRKL SL  LI N+K+L      +    KLR+ LE+LE
Sbjct: 181 ELNIGVTLLKKRCRELGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALELLE 240

Query: 168 NEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNN 203
            EKK++EE PDL+  D TKRLRQACFKA YK++RL  +++
Sbjct: 241 MEKKMIEEVPDLEFGDKTKRLRQACFKAKYKRRRLFSSSS 277

[Close]
BLAST of CmoCh11G001660 vs. Swiss-Prot
Match: RKD4_ARATH (Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.3e-27
Identity = 79/193 (40.93%), Postives = 114/193 (59.07%), Query Frame = 1 

Query: 13  LHFRNCNFGFQDSIFDVVPLFETCPNDSFLVLK------DIEPNNTIISEDGGENEKKGL 72
           LHF+     F+D  F+ + +  T P+D  L+ +      D   ++ +  ++ G      +
Sbjct: 71  LHFQFHYNSFED-FFENIEVDNTIPSDIHLLTQEPYFSSDSSSSSPLAIQNDGLISNVKV 130

Query: 73  ERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIR 132
           E+   + KR  + +R       L    I ++F  PI +AAKELNVGLT+LKKRCRELGI 
Sbjct: 131 EKVTVKKKRNLKKKRQDK----LEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIY 190

Query: 133 RWPHRKLMSLQTLIRNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQA 192
           RWPHRKL SL +LI+N+K +  E+ VK       LE  + L+E+ PD +L D TK+LRQA
Sbjct: 191 RWPHRKLKSLNSLIKNLKNVGMEEEVK------NLEEHRFLIEQEPDAELSDGTKKLRQA 250

Query: 193 CFKANYKKKRLSG 200
           CFKANYK+++  G
Sbjct: 251 CFKANYKRRKSLG 252

[Close]
BLAST of CmoCh11G001660 vs. Swiss-Prot
Match: RKD5_ARATH (Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-13
Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1 

Query: 60  ENEKKGLERKEGRGKRKWRGERSSSPSKG---LSRKTISEYFWMPISQAAKELNVGLTLL 119
           EN+K   E+ E   K +   ++  +PS+    LS + +S+YF + I +A++ L VGLT+L
Sbjct: 212 ENDKT--EQSESDAKTEILKKKKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVL 271

Query: 120 KKRCRELGIRRWPHRKLMSLQTLIRNV-KELEKED------GVKLRHVLEILENEKKLME 179
           KK+CRE GI RWPHRK+ SL  LI ++ +E EK+        + +    E LE EK+ + 
Sbjct: 272 KKKCREFGIPRWPHRKIKSLDCLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIV 331

Query: 180 ERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSAT 207
           +RP +++   TK+ RQ  FK  ++  R      S  T
Sbjct: 332 KRPFMEIGIETKKFRQENFKKRHRASRAKKNQESLVT 366

[Close]
BLAST of CmoCh11G001660 vs. TrEMBL
Match: A0A0A0LP42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009740 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.5e-54
Identity = 148/305 (48.52%), Postives = 182/305 (59.67%), Query Frame = 1 

Query: 2   DPFPLSCHLSPLHFRN----------------CNFGFQDSIF--------DVVPLFETCP 61
           D +P SC+LSP+HF +                 NFG Q++IF        D+VP+     
Sbjct: 17  DSYPFSCNLSPIHFSSYRSSYNHNYSGLDWNYANFGLQENIFEESFLDPEDIVPINTYIS 76

Query: 62  NDSFLVLKD--------IEPNNTIISEDGGENEKKG---LERKEGRGKRKWRGERSS--- 121
            D   +  +        +E    ++  + GENE+K    +  K+G+ KR  R +  +   
Sbjct: 77  EDEVGIWNEMDNGVFGVVEEEPPLLLLECGENEEKEEMVVSNKKGK-KRSMRLKSENECS 136

Query: 122 -----------SPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRK 181
                      S SK LSRK I EY++MPI+QAAKELNVGLTLLKKRCRELGI RWPHRK
Sbjct: 137 NNNSNNNGSCYSSSKMLSRKVIQEYYYMPITQAAKELNVGLTLLKKRCRELGIGRWPHRK 196

Query: 182 LMSLQTLIRNVKEL-EKED--------GVKLRHVLEILENEKKLMEERPDLQLEDNTKRL 232
           LMS+QTLI+N+KEL EK D          KL++VLEILENEKKLMEERPDLQLEDNTKRL
Sbjct: 197 LMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEERPDLQLEDNTKRL 256

[Close]
BLAST of CmoCh11G001660 vs. TrEMBL
Match: A0A061FXS1_THECC (RWP-RK domain-containing protein, putative OS=Theobroma cacao GN=TCM_014009 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 3.9e-47
Identity = 128/255 (50.20%), Postives = 158/255 (61.96%), Query Frame = 1 

Query: 20  FGFQDSIFDVVPLFETCPNDSFLVLKDIEPNNTIISED---------------------- 79
           F  Q+S FD +PL  +   D      D E ++++I +                       
Sbjct: 48  FPIQESFFDALPLMSSFYTDPLYDSLDFEKSSSLIQDHLTIVAENNLLGCEKGNGFWNEL 107

Query: 80  ------GGENEKKGLERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWMPISQAAKELNV 139
                  G+NE  G E KE R  ++ R E+ SS S  LSRK IS+YF++PI+QAAKELNV
Sbjct: 108 GALFKPNGKNEDFGEELKEERRAKRCREEKCSS-STMLSRKVISQYFYLPITQAAKELNV 167

Query: 140 GLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKELEKEDGV----KLRHVLEILENEKKL 199
           GLTLLKKRCRELGIRRWPHRKLMSLQTLI NV+EL+KE+G     KLR  +E+LE E+KL
Sbjct: 168 GLTLLKKRCRELGIRRWPHRKLMSLQTLIWNVQELQKEEGEESERKLREAVEVLERERKL 227

Query: 200 MEERPDLQLEDNTKRLRQACFKANYKKKRL---------SGTNNSSATRVHQDDDEEEED 234
           +EE PDLQLED TKRLRQACFKANYKK++L          G+  S       D + EE++
Sbjct: 228 LEEMPDLQLEDKTKRLRQACFKANYKKRKLMMMESQSSSGGSRESLDLTRGYDMENEEDE 287

[Close]
BLAST of CmoCh11G001660 vs. TrEMBL
Match: A0A0L9TSY2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g283500 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.1e-44
Identity = 125/272 (45.96%), Postives = 160/272 (58.82%), Query Frame = 1 

Query: 2   DPFPLSCHLS----------PLHFRNCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPNN 61
           +P P +C  S          PL     +   Q+   D VPL E  P+D       IEP  
Sbjct: 20  NPLPFTCQFSYSENSEVYPPPLQ----DLPIQEYHHDAVPLTEYYPSDPLYETLAIEPTP 79

Query: 62  TIISEDGGENEKKGL------------------------------ERKEGRGKRKWRGER 121
           T+ ++    +  KGL                              +RK   G+ +    R
Sbjct: 80  TLRADCDFYDISKGLPVWNEVNAVFDSEVDFLFRKKEESLKEMVDDRKVNEGREEITNPR 139

Query: 122 SSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIR 181
           +S   + LSRKTISEYF+MPI+QAA+E+NVGLTLLKKRCRELGIRRWPHRKLMSLQTLI 
Sbjct: 140 NS---RKLSRKTISEYFYMPITQAAREMNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIN 199

Query: 182 NVKELEKEDG----VKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRL 227
           NV+EL KE+G     KLR  +E LENEKKL+EE PD++LEDNTKRLRQACFKANYKK++L
Sbjct: 200 NVQELLKEEGPESEEKLRFAIETLENEKKLLEEMPDIELEDNTKRLRQACFKANYKKRKL 259

[Close]
BLAST of CmoCh11G001660 vs. TrEMBL
Match: M5WC92_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023107mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 103/168 (61.31%), Postives = 125/168 (74.40%), Query Frame = 1 

Query: 89  LSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKELEK 148
           LSR+TIS YF+MPI+QAAKELNVGLTLLKKRCRELGIRRWPHRKL SLQTLIRN++EL K
Sbjct: 2   LSRETISNYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLASLQTLIRNIQELGK 61

Query: 149 ---EDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNN--- 208
              E   KLR+ +++LE E+KL+EE PD+QLEDNTKRLRQACFKANYKK+++ G NN   
Sbjct: 62  EGEESEEKLRNAIQLLERERKLLEEVPDMQLEDNTKRLRQACFKANYKKRKIMGMNNMDQ 121

Query: 209 ------SSATRVHQ----DDDEEEEDEEMKYLLADCSFSFTGGSLLLY 241
                  S   +H+     DD  EEDEE+K LL+D   S    ++ L+
Sbjct: 122 SQSSFICSNNEIHEYASIMDDGYEEDEEIKSLLSDSFSSSNSNNICLF 169

[Close]
BLAST of CmoCh11G001660 vs. TrEMBL
Match: A0A068UVI1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035764001 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.4e-43
Identity = 121/253 (47.83%), Postives = 158/253 (62.45%), Query Frame = 1 

Query: 2   DPFPLSCHLSPLHFRNCNFGFQDSIFDVVPLFETCPNDSFLVLKDIEPNNTIISED---G 61
           DP   S  + P H+      FQDS       ++      F +  +  P   I ++     
Sbjct: 70  DPSYASLDIDPSHYV-----FQDS-------WQGFHGSGFRLGNEKSPEFDIQNQQLLLA 129

Query: 62  GENEKKGLERK---EGRGKRKWRGERSSS-PSKGLSRKTISEYFWMPISQAAKELNVGLT 121
           G NE+   + +   E +G +K R E+  +  SK LSRKTIS YF+MPI+QAAKELNVGLT
Sbjct: 130 GSNEQLTSQEEVVVEEKGMKKAREEKGGTISSKNLSRKTISNYFYMPITQAAKELNVGLT 189

Query: 122 LLKKRCRELGIRRWPHRKLMSLQTLIRNVKELEKEDGV----KLRHVLEILENEKKLMEE 181
           LLKKRCRELGIRRWPHRKLMSLQTLI+NV+EL KE G     K R  ++ILE+EKK++EE
Sbjct: 190 LLKKRCRELGIRRWPHRKLMSLQTLIKNVQELAKEGGEGAERKFREAIDILEHEKKMLEE 249

Query: 182 RPDLQLEDNTKRLRQACFKANYKKKRLSG----TNNSSATRVHQDD-----------DEE 229
            P LQLEDNTKRLRQACFKANYKK++L G    + + S    H+ +           D++
Sbjct: 250 IPHLQLEDNTKRLRQACFKANYKKRKLMGMVKESPSHSGVNPHEVNALAIPDFGSRVDDD 309

[Close]
BLAST of CmoCh11G001660 vs. TAIR10
Match: AT1G74480.1 (AT1G74480.1 RWP-RK domain-containing protein)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-40
Identity = 96/170 (56.47%), Postives = 120/170 (70.59%), Query Frame = 1 

Query: 82  SSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIR 141
           SS+P+  LS++T+S YF+MPI+QAA  LNVGLTLLK+RCRELGIRRWPHRKLMSL TLI 
Sbjct: 129 SSAPTT-LSKETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLIS 188

Query: 142 NVKELEK----EDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRL 201
           NVKEL+K    E+  KL+  LE+LE EK+ +E+ PDL+ +D TKRLRQACFKAN+K+K+ 
Sbjct: 189 NVKELQKMEGEENAEKLQDALEMLEKEKRTIEDLPDLEFKDKTKRLRQACFKANHKRKKK 248

Query: 202 SGTNN--------SSATRVHQDDDEE----EEDEEMKYLLADCSFSFTGG 236
               +        SS+  V  D+  +    E DEEMKYLL   S  FT G
Sbjct: 249 RSLKSDQSQVPSCSSSGSVPSDESVDEAGMESDEEMKYLLCGFSSEFTSG 297

[Close]
BLAST of CmoCh11G001660 vs. TAIR10
Match: AT1G18790.1 (AT1G18790.1 RWP-RK domain-containing protein)

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-40
Identity = 92/132 (69.70%), Postives = 107/132 (81.06%), Query Frame = 1 

Query: 74  KRKWRGE--RSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHR 133
           KR+ R E   S S SK LS++TIS YF+MPI+QAA+ELN+GLTLLKKRCRELGI+RWPHR
Sbjct: 111 KRRCREECFSSCSVSKTLSKETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHR 170

Query: 134 KLMSLQTLIRNVKELEKEDGV----KLRHVLEILENEKKLMEERPDLQLEDNTKRLRQAC 193
           KLMSLQ LI NVKELEK +G     KLR+ LE LE EKK +E+ PDL+ ED TKRLRQAC
Sbjct: 171 KLMSLQKLISNVKELEKMEGEENEDKLRNALEKLEKEKKTIEKLPDLKFEDKTKRLRQAC 230

Query: 194 FKANYKKKRLSG 200
           FKAN+K+KR SG
Sbjct: 231 FKANHKRKRRSG 242

[Close]
BLAST of CmoCh11G001660 vs. TAIR10
Match: AT5G66990.1 (AT5G66990.1 RWP-RK domain-containing protein)

HSP 1 Score: 134.4 bits (337), Expect = 9.1e-32
Identity = 79/160 (49.38%), Postives = 108/160 (67.50%), Query Frame = 1 

Query: 48  EPNNTIISEDGGENEKKGLERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWMPISQAAK 107
           +PN   I  +     K+   +K    KR++R +        +SR+ + +YF+MPI++AAK
Sbjct: 121 DPNMEQILHEDVNTMKEKTSQKRIIMKRRYRED---GVINNMSREMMKQYFYMPITKAAK 180

Query: 108 ELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKEL-----EKEDGVKLRHVLEILE 167
           ELN+G+TLLKKRCRELGI RWPHRKL SL  LI N+K+L      +    KLR+ LE+LE
Sbjct: 181 ELNIGVTLLKKRCRELGIPRWPHRKLTSLNALIANLKDLLGNTKGRTPKSKLRNALELLE 240

Query: 168 NEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNN 203
            EKK++EE PDL+  D TKRLRQACFKA YK++RL  +++
Sbjct: 241 MEKKMIEEVPDLEFGDKTKRLRQACFKAKYKRRRLFSSSS 277

[Close]
BLAST of CmoCh11G001660 vs. TAIR10
Match: AT5G53040.1 (AT5G53040.1 RWP-RK domain-containing protein)

HSP 1 Score: 122.1 bits (305), Expect = 4.7e-28
Identity = 79/193 (40.93%), Postives = 114/193 (59.07%), Query Frame = 1 

Query: 13  LHFRNCNFGFQDSIFDVVPLFETCPNDSFLVLK------DIEPNNTIISEDGGENEKKGL 72
           LHF+     F+D  F+ + +  T P+D  L+ +      D   ++ +  ++ G      +
Sbjct: 71  LHFQFHYNSFED-FFENIEVDNTIPSDIHLLTQEPYFSSDSSSSSPLAIQNDGLISNVKV 130

Query: 73  ERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIR 132
           E+   + KR  + +R       L    I ++F  PI +AAKELNVGLT+LKKRCRELGI 
Sbjct: 131 EKVTVKKKRNLKKKRQDK----LEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIY 190

Query: 133 RWPHRKLMSLQTLIRNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQA 192
           RWPHRKL SL +LI+N+K +  E+ VK       LE  + L+E+ PD +L D TK+LRQA
Sbjct: 191 RWPHRKLKSLNSLIKNLKNVGMEEEVK------NLEEHRFLIEQEPDAELSDGTKKLRQA 250

Query: 193 CFKANYKKKRLSG 200
           CFKANYK+++  G
Sbjct: 251 CFKANYKRRKSLG 252

[Close]
BLAST of CmoCh11G001660 vs. TAIR10
Match: AT4G35590.1 (AT4G35590.1 RWP-RK domain-containing protein)

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-15
Identity = 57/157 (36.31%), Postives = 89/157 (56.69%), Query Frame = 1 

Query: 60  ENEKKGLERKEGRGKRKWRGERSSSPSKG---LSRKTISEYFWMPISQAAKELNVGLTLL 119
           EN+K   E+ E   K +   ++  +PS+    LS + +S+YF + I +A++ L VGLT+L
Sbjct: 212 ENDKT--EQSESDAKTEILKKKKRTPSRHVAELSLEELSKYFDLTIVEASRNLKVGLTVL 271

Query: 120 KKRCRELGIRRWPHRKLMSLQTLIRNV-KELEKED------GVKLRHVLEILENEKKLME 179
           KK+CRE GI RWPHRK+ SL  LI ++ +E EK+        + +    E LE EK+ + 
Sbjct: 272 KKKCREFGIPRWPHRKIKSLDCLIHDLQREAEKQQEKNEAAAMAVAKKQEKLETEKRNIV 331

Query: 180 ERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSAT 207
           +RP +++   TK+ RQ  FK  ++  R      S  T
Sbjct: 332 KRPFMEIGIETKKFRQENFKKRHRASRAKKNQESLVT 366

[Close]
BLAST of CmoCh11G001660 vs. NCBI nr
Match: gi|659107446|ref|XP_008453676.1| (PREDICTED: protein RKD1-like [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 4.8e-59
Identity = 157/310 (50.65%), Postives = 184/310 (59.35%), Query Frame = 1 

Query: 4   FPLSCHLSPLHFRNC-------------NFGFQDSIFDVVPLFETCPNDSFLVLKDIEPN 63
           +  SC+LSP+HFR+              NFG QD+IF           D FL  KDI P 
Sbjct: 19  YHFSCNLSPIHFRSSYNNSYSGLDWNYTNFGLQDNIF----------EDPFLDPKDIVPI 78

Query: 64  NTIISEDG-------------------------GENEKKG---LERKEGRGKRKWRGERS 123
           NT ISEDG                         GENE+K    +  K+G+ + K     +
Sbjct: 79  NTYISEDGVGIWNGMDDGVFEVVEEEPLLLLECGENEEKEEMVVHNKKGKKRSKCLKSEN 138

Query: 124 -----------SSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHR 183
                       S SK LS+K ISEYF+MPI++AAKELNVGLTLLKKRCRELGIRRWPHR
Sbjct: 139 VCSNNSNNGSCYSSSKMLSKKVISEYFYMPITRAAKELNVGLTLLKKRCRELGIRRWPHR 198

Query: 184 KLMSLQTLIRNVKELEKED--------GVKLRHVLEILENEKKLMEERPDLQLEDNTKRL 234
           KLMS+QTLI+NVKE+EK D          KL++VLEILENEKKLMEERPDLQLEDNTKRL
Sbjct: 199 KLMSIQTLIKNVKEIEKGDEEEGNGSENCKLKNVLEILENEKKLMEERPDLQLEDNTKRL 258

[Close]
BLAST of CmoCh11G001660 vs. NCBI nr
Match: gi|700208574|gb|KGN63670.1| (hypothetical protein Csa_1G009740 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 3.6e-54
Identity = 148/305 (48.52%), Postives = 182/305 (59.67%), Query Frame = 1 

Query: 2   DPFPLSCHLSPLHFRN----------------CNFGFQDSIF--------DVVPLFETCP 61
           D +P SC+LSP+HF +                 NFG Q++IF        D+VP+     
Sbjct: 17  DSYPFSCNLSPIHFSSYRSSYNHNYSGLDWNYANFGLQENIFEESFLDPEDIVPINTYIS 76

Query: 62  NDSFLVLKD--------IEPNNTIISEDGGENEKKG---LERKEGRGKRKWRGERSS--- 121
            D   +  +        +E    ++  + GENE+K    +  K+G+ KR  R +  +   
Sbjct: 77  EDEVGIWNEMDNGVFGVVEEEPPLLLLECGENEEKEEMVVSNKKGK-KRSMRLKSENECS 136

Query: 122 -----------SPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRK 181
                      S SK LSRK I EY++MPI+QAAKELNVGLTLLKKRCRELGI RWPHRK
Sbjct: 137 NNNSNNNGSCYSSSKMLSRKVIQEYYYMPITQAAKELNVGLTLLKKRCRELGIGRWPHRK 196

Query: 182 LMSLQTLIRNVKEL-EKED--------GVKLRHVLEILENEKKLMEERPDLQLEDNTKRL 232
           LMS+QTLI+N+KEL EK D          KL++VLEILENEKKLMEERPDLQLEDNTKRL
Sbjct: 197 LMSIQTLIKNIKELIEKGDDEEGNGSENYKLKNVLEILENEKKLMEERPDLQLEDNTKRL 256

[Close]
BLAST of CmoCh11G001660 vs. NCBI nr
Match: gi|778664690|ref|XP_011660335.1| (PREDICTED: protein RKD1-like [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.8e-50
Identity = 140/278 (50.36%), Postives = 171/278 (61.51%), Query Frame = 1 

Query: 13  LHFRNCNFGFQDSIF--------DVVPLFETCPNDSFLVLKD--------IEPNNTIISE 72
           L +   NFG Q++IF        D+VP+      D   +  +        +E    ++  
Sbjct: 10  LDWNYANFGLQENIFEESFLDPEDIVPINTYISEDEVGIWNEMDNGVFGVVEEEPPLLLL 69

Query: 73  DGGENEKKG---LERKEGRGKRKWRGERSS--------------SPSKGLSRKTISEYFW 132
           + GENE+K    +  K+G+ KR  R +  +              S SK LSRK I EY++
Sbjct: 70  ECGENEEKEEMVVSNKKGK-KRSMRLKSENECSNNNSNNNGSCYSSSKMLSRKVIQEYYY 129

Query: 133 MPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKEL-EKED-------- 192
           MPI+QAAKELNVGLTLLKKRCRELGI RWPHRKLMS+QTLI+N+KEL EK D        
Sbjct: 130 MPITQAAKELNVGLTLLKKRCRELGIGRWPHRKLMSIQTLIKNIKELIEKGDDEEGNGSE 189

Query: 193 GVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSG-------TNN- 232
             KL++VLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKK++LSG        NN 
Sbjct: 190 NYKLKNVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKRKLSGLIINNNNNNNI 249

[Close]
BLAST of CmoCh11G001660 vs. NCBI nr
Match: gi|590667971|ref|XP_007037362.1| (RWP-RK domain-containing protein, putative [Theobroma cacao])

HSP 1 Score: 196.4 bits (498), Expect = 5.6e-47
Identity = 128/255 (50.20%), Postives = 158/255 (61.96%), Query Frame = 1 

Query: 20  FGFQDSIFDVVPLFETCPNDSFLVLKDIEPNNTIISED---------------------- 79
           F  Q+S FD +PL  +   D      D E ++++I +                       
Sbjct: 48  FPIQESFFDALPLMSSFYTDPLYDSLDFEKSSSLIQDHLTIVAENNLLGCEKGNGFWNEL 107

Query: 80  ------GGENEKKGLERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWMPISQAAKELNV 139
                  G+NE  G E KE R  ++ R E+ SS S  LSRK IS+YF++PI+QAAKELNV
Sbjct: 108 GALFKPNGKNEDFGEELKEERRAKRCREEKCSS-STMLSRKVISQYFYLPITQAAKELNV 167

Query: 140 GLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKELEKEDGV----KLRHVLEILENEKKL 199
           GLTLLKKRCRELGIRRWPHRKLMSLQTLI NV+EL+KE+G     KLR  +E+LE E+KL
Sbjct: 168 GLTLLKKRCRELGIRRWPHRKLMSLQTLIWNVQELQKEEGEESERKLREAVEVLERERKL 227

Query: 200 MEERPDLQLEDNTKRLRQACFKANYKKKRL---------SGTNNSSATRVHQDDDEEEED 234
           +EE PDLQLED TKRLRQACFKANYKK++L          G+  S       D + EE++
Sbjct: 228 LEEMPDLQLEDKTKRLRQACFKANYKKRKLMMMESQSSSGGSRESLDLTRGYDMENEEDE 287

[Close]
BLAST of CmoCh11G001660 vs. NCBI nr
Match: gi|1009132622|ref|XP_015883470.1| (PREDICTED: protein RKD1 [Ziziphus jujuba])

HSP 1 Score: 191.8 bits (486), Expect = 1.4e-45
Identity = 130/268 (48.51%), Postives = 162/268 (60.45%), Query Frame = 1 

Query: 4   FPLSCHLS-PLHFRNCNFGFQDSIFDVVPLFE---TCPNDSFLVLKDIEPN--------- 63
           FPL C    PL   N        + D VPL E   T P  + L  K + PN         
Sbjct: 49  FPLDCQFELPLQEDNI-------LLDAVPLMECLPTDPLYTALDFKSMGPNIIQDDIFYD 108

Query: 64  ----------NTIISEDGGENEKKGLERKEGRGKRKWRGERSSSPSKGLSRKTISEYFWM 123
                       +   DG  NE    E +    + +   E+SSS SK LSR+ IS+YF+M
Sbjct: 109 DHHGNSLGVYQDVFVGDGQNNENVLGEERRIIKRCRSSEEKSSSASKALSREIISQYFYM 168

Query: 124 PISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKELEKEDG----VKLRH 183
           PI+QAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLI+NV+EL KE+G     KL+ 
Sbjct: 169 PITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVQELGKEEGEENESKLKD 228

Query: 184 VLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSG-----------TNNSSA 234
            +E+LE EK+LMEE PD+QLEDNTKRLRQACFKANYKK+RL G            +N + 
Sbjct: 229 AIELLEREKRLMEELPDMQLEDNTKRLRQACFKANYKKRRLMGMMENSKAPSLICSNPAN 288

The following BLAST results are available for this feature:
BLAST of CmoCh11G001660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RKD2_ARATH2.5e-3956.47Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1[more]
RKD1_ARATH3.3e-3969.70Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1[more]
RKD3_ARATH1.6e-3049.38Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1[more]
RKD4_ARATH8.3e-2740.93Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1[more]
RKD5_ARATH1.4e-1336.31Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1[more]
BLAST of CmoCh11G001660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LP42_CUCSA2.5e-5448.52Uncharacterized protein OS=Cucumis sativus GN=Csa_1G009740 PE=4 SV=1[more]
A0A061FXS1_THECC3.9e-4750.20RWP-RK domain-containing protein, putative OS=Theobroma cacao GN=TCM_014009 PE=4... [more]
A0A0L9TSY2_PHAAN3.1e-4445.96Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g283500 PE=4 SV=1[more]
M5WC92_PRUPE1.5e-4361.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023107mg PE=4 SV=1[more]
A0A068UVI1_COFCA3.4e-4347.83Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035764001 PE=4 SV=1[more]
BLAST of CmoCh11G001660 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74480.11.4e-4056.47 RWP-RK domain-containing protein[more]
AT1G18790.11.8e-4069.70 RWP-RK domain-containing protein[more]
AT5G66990.19.1e-3249.38 RWP-RK domain-containing protein[more]
AT5G53040.14.7e-2840.93 RWP-RK domain-containing protein[more]
AT4G35590.17.8e-1536.31 RWP-RK domain-containing protein[more]
BLAST of CmoCh11G001660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659107446|ref|XP_008453676.1|4.8e-5950.65PREDICTED: protein RKD1-like [Cucumis melo][more]
gi|700208574|gb|KGN63670.1|3.6e-5448.52hypothetical protein Csa_1G009740 [Cucumis sativus][more]
gi|778664690|ref|XP_011660335.1|1.8e-5050.36PREDICTED: protein RKD1-like [Cucumis sativus][more]
gi|590667971|ref|XP_007037362.1|5.6e-4750.20RWP-RK domain-containing protein, putative [Theobroma cacao][more]
gi|1009132622|ref|XP_015883470.1|1.4e-4548.51PREDICTED: protein RKD1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003035RWP-RK_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh11G001660.1CmoCh11G001660.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003035RWP-RK domainPFAMPF02042RWP-RKcoord: 89..136
score: 1.3
IPR003035RWP-RK domainPROFILEPS51519RWP_RKcoord: 69..156
score: 16
NoneNo IPR availablePANTHERPTHR10270SOX TRANSCRIPTION FACTORcoord: 46..218
score: 5.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh11G001660Cucsa.197700Cucumber (Gy14) v1cgycmoB0578
CmoCh11G001660CmaCh11G001430Cucurbita maxima (Rimu)cmacmoB118
CmoCh11G001660Cla019112Watermelon (97103) v1cmowmB128
CmoCh11G001660Csa1G009740Cucumber (Chinese Long) v2cmocuB076
CmoCh11G001660MELO3C017174Melon (DHL92) v3.5.1cmomeB109
CmoCh11G001660CSPI01G02280Wild cucumber (PI 183967)cmocpiB079
CmoCh11G001660Lsi06G014640Bottle gourd (USVL1VR-Ls)cmolsiB128
CmoCh11G001660Cp4.1LG18g07970Cucurbita pepo (Zucchini)cmocpeB109
CmoCh11G001660MELO3C017174.2Melon (DHL92) v3.6.1cmomedB117
CmoCh11G001660Cla97C06G125780Watermelon (97103) v2cmowmbB123
CmoCh11G001660Bhi02G000228Wax gourdcmowgoB0160
CmoCh11G001660CsGy1G002330Cucumber (Gy14) v2cgybcmoB028
CmoCh11G001660Carg17963Silver-seed gourdcarcmoB0624
CmoCh11G001660Carg18188Silver-seed gourdcarcmoB0838
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh11G001660Cucurbita moschata (Rifu)cmocmoB039
CmoCh11G001660Cucurbita moschata (Rifu)cmocmoB088
CmoCh11G001660Cucurbita moschata (Rifu)cmocmoB103
CmoCh11G001660Cucurbita moschata (Rifu)cmocmoB123
CmoCh11G001660Cucurbita moschata (Rifu)cmocmoB124
CmoCh11G001660Cucumber (Gy14) v1cgycmoB0259
CmoCh11G001660Cucurbita maxima (Rimu)cmacmoB069
CmoCh11G001660Cucurbita maxima (Rimu)cmacmoB214
CmoCh11G001660Cucurbita maxima (Rimu)cmacmoB449
CmoCh11G001660Wild cucumber (PI 183967)cmocpiB080
CmoCh11G001660Cucumber (Chinese Long) v2cmocuB077
CmoCh11G001660Melon (DHL92) v3.5.1cmomeB084
CmoCh11G001660Watermelon (Charleston Gray)cmowcgB106
CmoCh11G001660Watermelon (Charleston Gray)cmowcgB119
CmoCh11G001660Watermelon (97103) v1cmowmB108
CmoCh11G001660Cucurbita pepo (Zucchini)cmocpeB119
CmoCh11G001660Cucurbita pepo (Zucchini)cmocpeB122
CmoCh11G001660Cucurbita pepo (Zucchini)cmocpeB129
CmoCh11G001660Bottle gourd (USVL1VR-Ls)cmolsiB094
CmoCh11G001660Bottle gourd (USVL1VR-Ls)cmolsiB100
CmoCh11G001660Cucumber (Gy14) v2cgybcmoB029
CmoCh11G001660Melon (DHL92) v3.6.1cmomedB090
CmoCh11G001660Silver-seed gourdcarcmoB0066
CmoCh11G001660Silver-seed gourdcarcmoB0525
CmoCh11G001660Cucumber (Chinese Long) v3cmocucB0091
CmoCh11G001660Cucumber (Chinese Long) v3cmocucB0092
CmoCh11G001660Watermelon (97103) v2cmowmbB107
CmoCh11G001660Watermelon (97103) v2cmowmbB143
CmoCh11G001660Wax gourdcmowgoB0099
CmoCh11G001660Wax gourdcmowgoB0131