CmoCh10G000200 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh10G000200
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Rubredoxin-like superfamily protein
Location	Cmo_Chr10 : 129311 .. 131607 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACTCGGAATCAAATAAAATTTGTTCCATAGGTTTTGTTCAAATTTTTAATATTTTGATATATGTTGTTCTTAGTTAATTGAACTCTAGTTGGTAAAAAGGGTTTTAAAGTTTAATTGCTTCTATAAATTTAGATTTCTTGATTTGAATTAGTGGGTAAAAAATGCATGAGATTGAGATTGTAGAGAGGAGGATTGGATCAAAATGATTGGCAAGATTGATGGATTGTCGGCCACTCATAGTTCGACCCATTCTCTCTGTTTTGTCGCCTCCATCTCTCATCTTACCTCTCTGCTCGGTGCTTCCCATCCTCCTCTCTCATTTCAGCTTTCTTATTACCTCACCTTCAATGGCTTCTTTTTCAGCTTCTTCTCTCAGCTTCCACCTACCGCCGAATCCACATTCCAAGATTAACCAGGTTCTCCTCTCATTCTTCTTCACACCTTAATTTACACTTCCACTTGCATTGCTCATTTTCCTACTTCCCGCTGTGTTCGGCACCTTCCTCCATCTCTTGATTCTTTTCTTCTTTAGTTTAATTATCAGTTATTGATTGATTATCATTTATTTAAGGAAGACGGCGGCGCTGATAGGGACTCCATGCTTTGGGGCTCTGCCTCCAACCGCTCATCTTTGAAATCCTCCTTCATCTCTCCCCTACGTCAGATTCCTTCCACAAGGAAGCAAAAGTGTGCTGTTGCAGCTGCCCCCAAGTTCTCCATGCGCGTCGCTTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACCACTTCGTATCTCTCCTTCCATTCCGCTTTTGAACCTAATTTACATCCTAATTTCCCCCATCTTTGTAAAGCTCCCTTTTGGACCAATATGTAGGTACATTTACAACGATAGAACTCCTTTTGAGAAATTGCCTGATAACTATTTCTGTCCTGGTAATTTGCTTCTGTCTTCTTCCACCTTCTTTCCAAACTTAATTCGTATAATCCTCGCGTCTACCAGTTCAAACCAATTTCTTGAATTGCCTCGTCAATCGGGTCAATTACTTTACTTTTGACGTTGGGTCGCGTTCATTTTTAGCACAATTAAGTTCCTGCTATTATTTTAAACTGACAACTTAAAAAGGATATCTTCAAGAACCAAAGAAACAGAACTTCTAGAACATAAAGTTCTCTTCCTGTCGGCGAAACCAACTTCCAATCATTTGCATTTGCTTTCAATAAAGAAGTTGAAATCTAATACAAGTTGTCGTGCCTTGGCAGTCTGCGGTGCTCCTAAGCGACGATTTAGACCTTATGAGCAATCAGTGACTAAAAATGATAACGAATTTGATGTGAGGAAGGCAAGAAAGGCGCAGATTCAGAAAGATGAAGCTATTGGGTAAGAGGGAAAATGAAACTACTCTTTGTAAATGATCATAGATTTTAATGATTGTTCATTCAGTCTGATTGATATCACGTAAAACGGTATAGGAAGGTGCTGCCTATTGCCGCCGCTGCAGTGGGAATCGTGGCACTTGTAGGTTTATACCTGTACCTGAATAGCGTCTTTTAGATCGAGTGGCTTGCTCGATGACGGGGGCTTGACATCATTTGTTTCATCATTTTCTTCCCGAGGCTGTTTTCTATTGATTTAGATATTAAATGTATTTTTTCGACCCACTTTCCGAAAACCCTGGCAAATTGTTTATTGACCGTTTATTTACACTCAGCAGAATAGCCATTGGATCATATATGAACTGCCCATCGCCTTGCCTTAGTTTATGTACCTGTGGATGTGGCTTTGGGTGTAATACTGACTTTGGGATGATTATATCTTCGAAGATTTTGTTTAACCAGTTCTTTCATGGACTGGACAATTGATGTGCTTTTGGATTCGCTTATTCTGGGAGAAGGAAGTGTTAGACACGTTTCTAAGCGACCGCCCTCAACATTGTCCTAAATTGTGGGACAAATCAGGCTCACCTACACTTCCTTTATGGTTATGTAAAACTATTTAAGGTGCAGAACCAGGAAGTGTGCTTCCAAGGATGGTTAGCAAGGCATCTGAGAAATGAACCTTTTGACCTTTTGTGATTTGGGTCTGTAGGTTTTCCCGAGTATCAGTTGGTTTAGCACATTGTTAACATTATATGTAGAGGAATCAGAGTTAGAGAATGTAGTGAATTGCAAATGGGAGGTTGTTTTTCATTGCCAAGAATGCTTGATCGTCTCTTTTACATTAAGTCTGCATCAGAAAACTTGGGGTGGAGGCCTGTTATCCAGAAACGACTTGAATAGCAGAAGTGACCTTTGAGGTTGCGAGAATGGTG

mRNA sequence

CAACTCGGAATCAAATAAAATTTGTTCCATAGGTTTTGTTCAAATTTTTAATATTTTGATATATGTTGTTCTTAGTTAATTGAACTCTAGTTGGTAAAAAGGGTTTTAAAGTTTAATTGCTTCTATAAATTTAGATTTCTTGATTTGAATTAGTGGGTAAAAAATGCATGAGATTGAGATTGTAGAGAGGAGGATTGGATCAAAATGATTGGCAAGATTGATGGATTGTCGGCCACTCATAGTTCGACCCATTCTCTCTGTTTTGTCGCCTCCATCTCTCATCTTACCTCTCTGCTCGGTGCTTCCCATCCTCCTCTCTCATTTCAGCTTTCTTATTACCTCACCTTCAATGGCTTCTTTTTCAGCTTCTTCTCTCAGCTTCCACCTACCGCCGAATCCACATTCCAAGATTAACCAGGAAGACGGCGGCGCTGATAGGGACTCCATGCTTTGGGGCTCTGCCTCCAACCGCTCATCTTTGAAATCCTCCTTCATCTCTCCCCTACGTCAGATTCCTTCCACAAGGAAGCAAAAGTGTGCTGTTGCAGCTGCCCCCAAGTTCTCCATGCGCGTCGCTTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAACGATAGAACTCCTTTTGAGAAATTGCCTGATAACTATTTCTGTCCTGTCTGCGGTGCTCCTAAGCGACGATTTAGACCTTATGAGCAATCAGTGACTAAAAATGATAACGAATTTGATGTGAGGAAGGCAAGAAAGGCGCAGATTCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCTATTGCCGCCGCTGCAGTGGGAATCGTGGCACTTGTAGGTTTATACCTGTACCTGAATAGCGTCTTTTAGATCGAGTGGCTTGCTCGATGACGGGGGCTTGACATCATTTGTTTCATCATTTTCTTCCCGAGGCTGTTTTCTATTGATTTAGATATTAAATGTATTTTTTCGACCCACTTTCCGAAAACCCTGGCAAATTGTTTATTGACCGTTTATTTACACTCAGCAGAATAGCCATTGGATCATATATGAACTGCCCATCGCCTTGCCTTAGTTTATGTACCTGTGGATGTGGCTTTGGGTGTAATACTGACTTTGGGATGATTATATCTTCGAAGATTTTGTTTAACCAGTTCTTTCATGGACTGGACAATTGATGTGCTTTTGGATTCGCTTATTCTGGGAGAAGGAAGTGTTAGACACGTTTCTAAGCGACCGCCCTCAACATTGTCCTAAATTGTGGGACAAATCAGGCTCACCTACACTTCCTTTATGGTTATGTAAAACTATTTAAGGTGCAGAACCAGGAAGTGTGCTTCCAAGGATGGTTAGCAAGGCATCTGAGAAATGAACCTTTTGACCTTTTGTGATTTGGGTCTGTAGGTTTTCCCGAGTATCAGTTGGTTTAGCACATTGTTAACATTATATGTAGAGGAATCAGAGTTAGAGAATGTAGTGAATTGCAAATGGGAGGTTGTTTTTCATTGCCAAGAATGCTTGATCGTCTCTTTTACATTAAGTCTGCATCAGAAAACTTGGGGTGGAGGCCTGTTATCCAGAAACGACTTGAATAGCAGAAGTGACCTTTGAGGTTGCGAGAATGGTG

Coding sequence (CDS)

ATGGATTGTCGGCCACTCATAGTTCGACCCATTCTCTCTGTTTTGTCGCCTCCATCTCTCATCTTACCTCTCTGCTCGGTGCTTCCCATCCTCCTCTCTCATTTCAGCTTTCTTATTACCTCACCTTCAATGGCTTCTTTTTCAGCTTCTTCTCTCAGCTTCCACCTACCGCCGAATCCACATTCCAAGATTAACCAGGAAGACGGCGGCGCTGATAGGGACTCCATGCTTTGGGGCTCTGCCTCCAACCGCTCATCTTTGAAATCCTCCTTCATCTCTCCCCTACGTCAGATTCCTTCCACAAGGAAGCAAAAGTGTGCTGTTGCAGCTGCCCCCAAGTTCTCCATGCGCGTCGCTTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAACGATAGAACTCCTTTTGAGAAATTGCCTGATAACTATTTCTGTCCTGTCTGCGGTGCTCCTAAGCGACGATTTAGACCTTATGAGCAATCAGTGACTAAAAATGATAACGAATTTGATGTGAGGAAGGCAAGAAAGGCGCAGATTCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCTATTGCCGCCGCTGCAGTGGGAATCGTGGCACTTGTAGGTTTATACCTGTACCTGAATAGCGTCTTTTAG

Homology

[Close]

BLAST of CmoCh10G000200 vs. Swiss-Prot
Match: RUBR1_DESDA (Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rd1 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.6e-06
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1


Query: 122 QAYICRDCGYIYN----DRTPFEKLPDNYFCPVCGAPKRRFRP 161
           Q Y+C  CGY Y+    D  PF++LPD++ CPVCG  K +F P
Sbjct: 2   QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 44

[Close]

BLAST of CmoCh10G000200 vs. TrEMBL
Match: A0A0A0LNF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000640 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.1e-74
Identity = 150/173 (86.71%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 44  MASFSASSLSFHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLRQIPSTRK 103
           MAS SASSLSFHLPP PH K+NQEDGG DR+SM   SASNR SLKSSFISPLR+IPS RK
Sbjct: 1   MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 60

Query: 104 QKCAVAAA-PKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYE 163
           Q   VAAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 164 QSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGLYLYLNSVF 216
           Q+V+KNDNEFDVRKARKAQIQKDEAIGKVLPI AAA+GIVALVGLYLYLNS F
Sbjct: 121 QTVSKNDNEFDVRKARKAQIQKDEAIGKVLPI-AAALGIVALVGLYLYLNSAF 172

[Close]

BLAST of CmoCh10G000200 vs. TrEMBL
Match: E5GBM0_CUCME (Electron transporter OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-74
Identity = 149/173 (86.13%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 44  MASFSASSLSFHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLRQIPSTRK 103
           MAS SASSLSFHLPP PH K+NQEDGG DR+SM   SASNR SLKSSFISPLR+IPS R+
Sbjct: 1   MASVSASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRR 60

Query: 104 QKCAVAAA-PKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYE 163
           Q   VAAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 164 QSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGLYLYLNSVF 216
           Q+V KNDNEFD+RKARKAQIQKDEAIGKVLPI AAA+GIVALVGLYLYLNSVF
Sbjct: 121 QTVNKNDNEFDLRKARKAQIQKDEAIGKVLPI-AAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of CmoCh10G000200 vs. TrEMBL
Match: E6NU05_JATCU (JHL07K02.5 protein OS=Jatropha curcas GN=JHL07K02.5 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.3e-43
Identity = 95/138 (68.84%), Postives = 110/138 (79.71%), Query Frame = 1


Query: 82  SNRSSLKSSFISP----LRQIPSTRKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRT 141
           S+R +LKSSF SP    L    S + Q+   ++AP++SMRVASKQAYICRDCGYIYN+RT
Sbjct: 32  SDRFALKSSFFSPSLYLLSLANSNQLQQPLASSAPRYSMRVASKQAYICRDCGYIYNERT 91

Query: 142 PFEKLPDNYFCPVCGAPKRRFRPYEQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAA 201
           PFEKLPD YFCPVCGAPKRRF+PY  +VTKNDN+ DVRKARKAQ+Q+DEAIG+ LPI   
Sbjct: 92  PFEKLPDKYFCPVCGAPKRRFKPYAPTVTKNDNQTDVRKARKAQLQRDEAIGRALPI-GI 151

Query: 202 AVGIVALVGLYLYLNSVF 216
           AVG VAL GLY YLN  F
Sbjct: 152 AVGAVALAGLYFYLNGSF 168

[Close]

BLAST of CmoCh10G000200 vs. TrEMBL
Match: A0A068TQK0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022344001 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.0e-43
Identity = 96/131 (73.28%), Postives = 106/131 (80.92%), Query Frame = 1


Query: 86  SLKSSFISP-LRQIPSTRKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPD 145
           +LKSSF++P L  +    +   A A APKFSMRVASKQAYICRDCGYIYNDRTPFEKLPD
Sbjct: 32  ALKSSFLAPSLHLLLPPHQGSGAPATAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPD 91

Query: 146 NYFCPVCGAPKRRFRPYEQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVAL 205
           N+FCPVCGAPKRRF+PY   V KN NE DVRKARKAQIQ+DEAIG+ LPI   AVGI AL
Sbjct: 92  NFFCPVCGAPKRRFKPYVPKVAKNANESDVRKARKAQIQRDEAIGRALPI-GIAVGIAAL 151

Query: 206 VGLYLYLNSVF 216
            GLYLYLN+ F
Sbjct: 152 GGLYLYLNNTF 161

[Close]

BLAST of CmoCh10G000200 vs. TrEMBL
Match: B9RA53_RICCO (Electron transporter, putative OS=Ricinus communis GN=RCOM_1503210 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.2e-43
Identity = 94/134 (70.15%), Postives = 108/134 (80.60%), Query Frame = 1


Query: 83  NRSSLKSSFISP-LRQIPSTRKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEK 142
           +R +LKSSF SP L  +  + + +   AAAP+FSMRVASKQAYICRDCGYIYN+RTPFEK
Sbjct: 36  DRFALKSSFFSPSLHLLLPSNQHRPLAAAAPRFSMRVASKQAYICRDCGYIYNERTPFEK 95

Query: 143 LPDNYFCPVCGAPKRRFRPYEQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGI 202
           LPD YFCPVCGAPKRRFR Y  +V KNDN+ D RKARKAQIQ+DEAIG+ LPI A  VG+
Sbjct: 96  LPDKYFCPVCGAPKRRFRQYTPTVNKNDNQTDTRKARKAQIQRDEAIGRALPI-AIVVGV 155

Query: 203 VALVGLYLYLNSVF 216
           VAL GLY YL+S F
Sbjct: 156 VALAGLYFYLSSSF 168

[Close]

BLAST of CmoCh10G000200 vs. TAIR10
Match: AT5G51010.1 (AT5G51010.1 Rubredoxin-like superfamily protein)

HSP 1 Score: 164.5 bits (415), Expect = 7.4e-41
Identity = 81/126 (64.29%), Postives = 99/126 (78.57%), Query Frame = 1


Query: 88  KSSFISPLRQIPSTRKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYF 147
           +SSF+          K+  + ++AP+FSMRV+SKQAYICRDCGYIYNDRTPF+KLPDNYF
Sbjct: 28  RSSFLPYYSMRLLGNKKSLSKSSAPRFSMRVSSKQAYICRDCGYIYNDRTPFDKLPDNYF 87

Query: 148 CPVCGAPKRRFRPYEQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGL 207
           CPVC APKRRFR Y   V+KN N+ DVRKARKA++Q+DEA+GK LPI   AVG++AL  L
Sbjct: 88  CPVCAAPKRRFRAYMPDVSKNVNDKDVRKARKAELQRDEAVGKALPI-GIAVGVLALAAL 147

Query: 208 YLYLNS 214
           Y Y+NS
Sbjct: 148 YFYVNS 152

[Close]

BLAST of CmoCh10G000200 vs. TAIR10
Match: AT5G17170.1 (AT5G17170.1 rubredoxin family protein)

HSP 1 Score: 54.7 bits (130), Expect = 8.2e-08
Identity = 32/101 (31.68%), Postives = 48/101 (47.52%), Query Frame = 1


Query: 110 AAPKFSMRVA----SKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYEQSV 169
           A P+F  ++     ++  +IC DCG+IY     F++ PD Y CP C APK+RF  Y+   
Sbjct: 179 APPRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKKRFAKYD--- 238

Query: 170 TKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVG 207
                           +   +AIG  LP     VG++A +G
Sbjct: 239 ----------------VNTGKAIGGGLPPIGVIVGLLAGLG 260

[Close]

BLAST of CmoCh10G000200 vs. NCBI nr
Match: gi|449440502|ref|XP_004138023.1| (PREDICTED: uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 1.6e-74
Identity = 150/173 (86.71%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 44  MASFSASSLSFHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLRQIPSTRK 103
           MAS SASSLSFHLPP PH K+NQEDGG DR+SM   SASNR SLKSSFISPLR+IPS RK
Sbjct: 1   MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 60

Query: 104 QKCAVAAA-PKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYE 163
           Q   VAAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 164 QSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGLYLYLNSVF 216
           Q+V+KNDNEFDVRKARKAQIQKDEAIGKVLPI AAA+GIVALVGLYLYLNS F
Sbjct: 121 QTVSKNDNEFDVRKARKAQIQKDEAIGKVLPI-AAALGIVALVGLYLYLNSAF 172

[Close]

BLAST of CmoCh10G000200 vs. NCBI nr
Match: gi|659128800|ref|XP_008464376.1| (PREDICTED: uncharacterized protein LOC103502280 isoform X1 [Cucumis melo])

HSP 1 Score: 286.2 bits (731), Expect = 4.8e-74
Identity = 149/173 (86.13%), Postives = 157/173 (90.75%), Query Frame = 1


Query: 44  MASFSASSLSFHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLRQIPSTRK 103
           MAS SASSLSFHLPP PH K+NQEDGG DR+SM   SASNR SLKSSFISPLR+IPS R+
Sbjct: 1   MASVSASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRR 60

Query: 104 QKCAVAAA-PKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYE 163
           Q   VAAA PKFSMRVASKQAYICRDCGYIYNDRTPF+KLPD YFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 164 QSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGLYLYLNSVF 216
           Q+V KNDNEFD+RKARKAQIQKDEAIGKVLPI AAA+GIVALVGLYLYLNSVF
Sbjct: 121 QTVNKNDNEFDLRKARKAQIQKDEAIGKVLPI-AAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of CmoCh10G000200 vs. NCBI nr
Match: gi|778655218|ref|XP_011649175.1| (PREDICTED: uncharacterized protein LOC101207574 isoform X2 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 4.3e-59
Identity = 124/141 (87.94%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 76  MLWGSASNRSSLKSSFISPLRQIPSTRKQKCAVAAA-PKFSMRVASKQAYICRDCGYIYN 135
           M   SASNR SLKSSFISPLR+IPS RKQ   VAAA PKFSMRVASKQAYICRDCGYIYN
Sbjct: 1   MFLDSASNRLSLKSSFISPLRKIPSLRKQNSVVAAASPKFSMRVASKQAYICRDCGYIYN 60

Query: 136 DRTPFEKLPDNYFCPVCGAPKRRFRPYEQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPI 195
           DRTPF+KLPD YFCPVCGAPKRRFRPYEQ+V+KNDNEFDVRKARKAQIQKDEAIGKVLPI
Sbjct: 61  DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVSKNDNEFDVRKARKAQIQKDEAIGKVLPI 120

Query: 196 AAAAVGIVALVGLYLYLNSVF 216
            AAA+GIVALVGLYLYLNS F
Sbjct: 121 -AAALGIVALVGLYLYLNSAF 140

[Close]

BLAST of CmoCh10G000200 vs. NCBI nr
Match: gi|659128802|ref|XP_008464377.1| (PREDICTED: uncharacterized protein LOC103502280 isoform X2 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 9.7e-59
Identity = 123/141 (87.23%), Postives = 129/141 (91.49%), Query Frame = 1


Query: 76  MLWGSASNRSSLKSSFISPLRQIPSTRKQKCAVAAA-PKFSMRVASKQAYICRDCGYIYN 135
           M   SASNR SLKSSFISPLR+IPS R+Q   VAAA PKFSMRVASKQAYICRDCGYIYN
Sbjct: 1   MFLDSASNRLSLKSSFISPLRKIPSLRRQNSVVAAASPKFSMRVASKQAYICRDCGYIYN 60

Query: 136 DRTPFEKLPDNYFCPVCGAPKRRFRPYEQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPI 195
           DRTPF+KLPD YFCPVCGAPKRRFRPYEQ+V KNDNEFD+RKARKAQIQKDEAIGKVLPI
Sbjct: 61  DRTPFDKLPDKYFCPVCGAPKRRFRPYEQTVNKNDNEFDLRKARKAQIQKDEAIGKVLPI 120

Query: 196 AAAAVGIVALVGLYLYLNSVF 216
            AAA+GIVALVGLYLYLNSVF
Sbjct: 121 -AAALGIVALVGLYLYLNSVF 140

[Close]

BLAST of CmoCh10G000200 vs. NCBI nr
Match: gi|719978727|ref|XP_010249256.1| (PREDICTED: uncharacterized protein LOC104591875 [Nelumbo nucifera])

HSP 1 Score: 186.8 bits (473), Expect = 3.9e-44
Identity = 108/179 (60.34%), Postives = 124/179 (69.27%), Query Frame = 1


Query: 38  LITSPSMASFSASSLSFHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISP-LR 97
           L  S  + + +AS  S  L P+ H  + +               S+R +LKSSF SP L 
Sbjct: 3   LQASARLKTVAASPSSSPLSPSAHVGLRRP--------------SHRFALKSSFFSPSLH 62

Query: 98  QIPSTRKQKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKR 157
            + S  +Q  + AAAP+FSMRVASKQAYICRDCGYIYNDRTPFEKLPD YFCPVCGAPKR
Sbjct: 63  LLFSPPQQPLSSAAAPRFSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKR 122

Query: 158 RFRPYEQSVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAAVGIVALVGLYLYLNSVF 216
           RFR YE +VTKN N+ DVRKARKAQIQ DEAIG+ LPI A  VGI AL GLY YLN+ F
Sbjct: 123 RFRTYEPAVTKNANDTDVRKARKAQIQSDEAIGRALPI-AIVVGIAALAGLYFYLNNAF 166

The following BLAST results are available for this feature:

BLAST of CmoCh10G000200 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RUBR1_DESDA	5.6e-06	48.84	Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rd...	[more]

BLAST of CmoCh10G000200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNF5_CUCSA	1.1e-74	86.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000640 PE=4 SV=1	[more]
E5GBM0_CUCME	3.3e-74	86.13	Electron transporter OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E6NU05_JATCU	2.3e-43	68.84	JHL07K02.5 protein OS=Jatropha curcas GN=JHL07K02.5 PE=4 SV=1	[more]
A0A068TQK0_COFCA	3.0e-43	73.28	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022344001 PE=4 SV=1	[more]
B9RA53_RICCO	5.2e-43	70.15	Electron transporter, putative OS=Ricinus communis GN=RCOM_1503210 PE=4 SV=1	[more]

BLAST of CmoCh10G000200 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51010.1	7.4e-41	64.29	Rubredoxin-like superfamily protein	[more]
AT5G17170.1	8.2e-08	31.68	rubredoxin family protein	[more]

BLAST of CmoCh10G000200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440502\|ref\|XP_004138023.1\|	1.6e-74	86.71	PREDICTED: uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus]	[more]
gi\|659128800\|ref\|XP_008464376.1\|	4.8e-74	86.13	PREDICTED: uncharacterized protein LOC103502280 isoform X1 [Cucumis melo]	[more]
gi\|778655218\|ref\|XP_011649175.1\|	4.3e-59	87.94	PREDICTED: uncharacterized protein LOC101207574 isoform X2 [Cucumis sativus]	[more]
gi\|659128802\|ref\|XP_008464377.1\|	9.7e-59	87.23	PREDICTED: uncharacterized protein LOC103502280 isoform X2 [Cucumis melo]	[more]
gi\|719978727\|ref\|XP_010249256.1\|	3.9e-44	60.34	PREDICTED: uncharacterized protein LOC104591875 [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004039	Rubredoxin-type fold
IPR024934	Rubredoxin-like_dom
IPR024935	Rubredoxin_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005506	iron ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh10G000200.1	CmoCh10G000200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004039	Rubredoxin-type fold	GENE3D	G3DSA:2.20.28.10		coord: 120..162 score: 9.4
IPR024934	Rubredoxin-like domain	PROFILE	PS50903	RUBREDOXIN_LIKE	coord: 121..161 score: 12
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 124..158 score: 1.
None	No IPR available	PANTHER	PTHR17130	MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25	coord: 83..215 score: 1.9
None	No IPR available	PANTHER	PTHR17130:SF25	SUBFAMILY NOT NAMED	coord: 83..215 score: 1.9
None	No IPR available	unknown	SSF57802	Rubredoxin-like	coord: 121..166 score: 1.68

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh10G000200	CmaCh11G000080	Cucurbita maxima (Rimu)	cmacmoB100
CmoCh10G000200	Cla019316	Watermelon (97103) v1	cmowmB064
CmoCh10G000200	Csa1G000640	Cucumber (Chinese Long) v2	cmocuB037
CmoCh10G000200	MELO3C026168	Melon (DHL92) v3.5.1	cmomeB057
CmoCh10G000200	ClCG06G018300	Watermelon (Charleston Gray)	cmowcgB065
CmoCh10G000200	CSPI01G00140	Wild cucumber (PI 183967)	cmocpiB040
CmoCh10G000200	Lsi06G016770	Bottle gourd (USVL1VR-Ls)	cmolsiB058
CmoCh10G000200	MELO3C026168.2	Melon (DHL92) v3.6.1	cmomedB060
CmoCh10G000200	CsaV3_1G000140	Cucumber (Chinese Long) v3	cmocucB0044
CmoCh10G000200	Cla97C06G128060	Watermelon (97103) v2	cmowmbB071
CmoCh10G000200	Bhi02G000474	Wax gourd	cmowgoB0075
CmoCh10G000200	CsGy1G000110	Cucumber (Gy14) v2	cgybcmoB005
CmoCh10G000200	Carg24561	Silver-seed gourd	carcmoB0829

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh10G000200	CmoCh11G000070	Cucurbita moschata (Rifu)	cmocmoB039

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh10G000200	Cucurbita pepo (Zucchini)	cmocpeB055
CmoCh10G000200	Cucurbita pepo (Zucchini)	cmocpeB070
CmoCh10G000200	Cucumber (Gy14) v2	cgybcmoB262
CmoCh10G000200	Silver-seed gourd	carcmoB0493
CmoCh10G000200	Cucumber (Chinese Long) v3	cmocucB0074
CmoCh10G000200	Cucumber (Gy14) v1	cgycmoB0432
CmoCh10G000200	Cucurbita maxima (Rimu)	cmacmoB067