Carg24561 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24561
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rubredoxin
Location	Cucurbita_argyrosperma_scaffold_330 : 101984 .. 103420 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAATTGGCGAGTCTGTAAGTTTGGAGAGGGAGATAGGATAGGATAAAAATGATTGGGAAGATTGAGATCGTTGATTGTCCGCCACTCATAGATTCACCACTTCACCCACTCTTTCTGAGTTTCTCTCGCCTACGACACCCAACCCACACCCACGATCCCCCTATCGATATCTCCTCCTCCCCTTCCTTCTGCTTCACATTTCCCCTTTTCAAATTTCTCTGCTCTGCTCTGCTCTGCTCTCTTATTACTTCCAATGGCCTCTGTTTCAGCTACCTCTCTTAGGTTCCAGCTACCGCCCAACCAACATTCCAAGATCTACCAGGTTTTCTCTCTTAATCTGCTCCTTCATTTACACTTGCATTGCTCCATCTTTTCAATCTAATTCATTTCTGTTATCTATCATAATTGATTGTGATTTATTTAAGGAAGACGGCGGCGCTGATAGGCACTCCAGCTTCTTATCTTTGAAATCCTCCTTCTTCTCTCCTTTACGTAACATTCCTTCTTTAAGGAAGCAAAACTCTGCTGTTGCAGCTGCCCCCAAGGTCTCCATGCGCGTCGCGTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTATCTCTCCTTCCTCTCTGCGTTTCAACCTAATTTATTTACATCTTTGTTTCCCTCTTCACGCTCTCTTTTCCATGAATATGAATATGCAGGTACATTTACAACGACAGAACGCCTTTTGAAAAATTGCCTGATAAGTATTTCTGTCCTGGTAATTTGCTTCCCTCCTCTTCCTTTCTCAGGCATGGATGATATTGACCTGCGTTTTGTTATTTCTTGTTTGCAACTGCATCTTCCCAAACTTAATTTCATGTAGTTCTCGAGTCTACCACTTCAAATCGATTCCAAAAGTTCTCTGTTCAATAGGACCAGTTAGTTTATTGTTGACGCTGAGTCGCCTTAAAAAAAAAAAAAAAAAACAGAATAAGTTCCTGCTATAATTGTAAACAGAAAAGTTCAAAAATAAATCTACAAGAACCAAAGAAACATAACTTATAGAACACAAAGTATCTTCTTGTCTTTGAAACCAACTTCGAATCATTTACATTCAGCTCCAGTTCAATAAAGAAACTGAAATCTAATATCGATGATCATGCCTTGACAGTTTGTGGTGCTCCTAAGCGACGATTTAGGCCTTATGAGCAATCTGTGACTAAAAATGCTAACGAATTTGATACGAGGAAGGCTAGAAAGGCACAGATCCAGAAAGATGAAGCTATTGGGTAAGATGGAAACTCAAATTACAATCTTCATAAGTGATCATAGGGATTTGAATGACTATTTATTGTGTATCTGATTGATATCACGTAAAATGGTATAGGAAGGTGCTGCCCATAGCTGCTGCAGTGGGAATCGTGGCACTTGTAGGGTTGTACTTGTACCTGAATAACGCCTTTTAG

mRNA sequence

GTTGAATTGGCGAGTCTGTAAGTTTGGAGAGGGAGATAGGATAGGATAAAAATGATTGGGAAGATTGAGATCGTTGATTGTCCGCCACTCATAGATTCACCACTTCACCCACTCTTTCTGAGTTTCTCTCGCCTACGACACCCAACCCACACCCACGATCCCCCTATCGATATCTCCTCCTCCCCTTCCTTCTGCTTCACATTTCCCCTTTTCAAATTTCTCTGCTCTGCTCTGCTCTGCTCTCTTATTACTTCCAATGGCCTCTGTTTCAGCTACCTCTCTTAGGTTCCAGCTACCGCCCAACCAACATTCCAAGATCTACCAGGAAGACGGCGGCGCTGATAGGCACTCCAGCTTCTTATCTTTGAAATCCTCCTTCTTCTCTCCTTTACGTAACATTCCTTCTTTAAGGAAGCAAAACTCTGCTGTTGCAGCTGCCCCCAAGGTCTCCATGCGCGTCGCGTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAACGACAGAACGCCTTTTGAAAAATTGCCTGATAAGTATTTCTGTCCTGTTTGTGGTGCTCCTAAGCGACGATTTAGGCCTTATGAGCAATCTGTGACTAAAAATGCTAACGAATTTGATACGAGGAAGGCTAGAAAGGCACAGATCCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCCATAGCTGCTGCAGTGGGAATCGTGGCACTTGTAGGGTTGTACTTGTACCTGAATAACGCCTTTTAG

Coding sequence (CDS)

ATGGCCTCTGTTTCAGCTACCTCTCTTAGGTTCCAGCTACCGCCCAACCAACATTCCAAGATCTACCAGGAAGACGGCGGCGCTGATAGGCACTCCAGCTTCTTATCTTTGAAATCCTCCTTCTTCTCTCCTTTACGTAACATTCCTTCTTTAAGGAAGCAAAACTCTGCTGTTGCAGCTGCCCCCAAGGTCTCCATGCGCGTCGCGTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAACGACAGAACGCCTTTTGAAAAATTGCCTGATAAGTATTTCTGTCCTGTTTGTGGTGCTCCTAAGCGACGATTTAGGCCTTATGAGCAATCTGTGACTAAAAATGCTAACGAATTTGATACGAGGAAGGCTAGAAAGGCACAGATCCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCCATAGCTGCTGCAGTGGGAATCGTGGCACTTGTAGGGTTGTACTTGTACCTGAATAACGCCTTTTAG

Protein sequence

MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

Homology

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BLAST of Carg24561 vs. NCBI nr
Match: XP_022927654.1 (uncharacterized protein LOC111434474 [Cucurbita moschata] >XP_022974453.1 uncharacterized protein LOC111473110 [Cucurbita maxima])

HSP 1 Score: 327.0 bits (837), Expect = 3.6e-86
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAA 60
           MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAA
Sbjct: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAA 60

Query: 61  APKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNAN 120
           APKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNAN
Sbjct: 61  APKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNAN 120

Query: 121 EFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           EFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
Sbjct: 121 EFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 164

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BLAST of Carg24561 vs. NCBI nr
Match: XP_023531329.1 (uncharacterized protein LOC111793604 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 325.9 bits (834), Expect = 8.1e-86
Identity = 163/164 (99.39%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAA 60
           MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAA
Sbjct: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAA 60

Query: 61  APKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNAN 120
           APKVSMRVASKQAYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYEQSVTKNAN
Sbjct: 61  APKVSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYEQSVTKNAN 120

Query: 121 EFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           EFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
Sbjct: 121 EFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 164

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BLAST of Carg24561 vs. NCBI nr
Match: XP_004138023.1 (PREDICTED: uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus] >KGN63440.1 hypothetical protein Csa_1G000640 [Cucumis sativus])

HSP 1 Score: 272.7 bits (696), Expect = 8.1e-70
Identity = 141/172 (81.98%), Postives = 150/172 (87.21%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRK 60
           MAS+SA+SL F LPP  H K+ QEDGG DR+S F       LSLKSSF SPLR IPSLRK
Sbjct: 1   MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 60

Query: 61  QNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYE 120
           QNS VAAA PK SMRVASKQAYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 121 QSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           Q+V+KN NEFD RKARKAQIQKDEAIGKVLPIAAA+GIVALVGLYLYLN+AF
Sbjct: 121 QTVSKNDNEFDVRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSAF 172

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BLAST of Carg24561 vs. NCBI nr
Match: XP_023516579.1 (uncharacterized protein LOC111780418 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 272.7 bits (696), Expect = 8.1e-70
Identity = 142/171 (83.04%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRK 60
           MAS SA+SL F LPPN HSKI QEDGGADR S          SLKSSF SPLR IPS RK
Sbjct: 1   MASFSASSLSFHLPPNPHSKINQEDGGADRGSMLWGSASNRSSLKSSFISPLRQIPSTRK 60

Query: 61  QNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQ 120
           Q  AVAAAPK SMRVASKQAYICRDCGYIYNDRTPFEKLPD YFCPVCGAPKRRFRPYEQ
Sbjct: 61  QKCAVAAAPKFSMRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYEQ 120

Query: 121 SVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           SVTKN NEFD RKARKAQIQKDEAIGKVLPIAAAVGI+ALVGLYLYLN+ F
Sbjct: 121 SVTKNDNEFDVRKARKAQIQKDEAIGKVLPIAAAVGILALVGLYLYLNSVF 171

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BLAST of Carg24561 vs. NCBI nr
Match: XP_022987160.1 (uncharacterized protein LOC111484793 isoform X1 [Cucurbita maxima])

HSP 1 Score: 270.4 bits (690), Expect = 4.0e-69
Identity = 141/171 (82.46%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRK 60
           MAS SA+SL F LPPN HSKI QEDGGADR S          SLKSSF SPL  IPS RK
Sbjct: 1   MASFSASSLSFHLPPNPHSKINQEDGGADRDSMLWGSASNRSSLKSSFISPLPQIPSTRK 60

Query: 61  QNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQ 120
           Q  AVAAAPK S+RVASKQAYICRDCGYIYNDRTPFEKLPD YFCPVCGAPKRRFRPYEQ
Sbjct: 61  QKCAVAAAPKFSLRVASKQAYICRDCGYIYNDRTPFEKLPDNYFCPVCGAPKRRFRPYEQ 120

Query: 121 SVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           SVTKN NEFD RKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLN+ F
Sbjct: 121 SVTKNDNEFDARKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNSVF 171

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BLAST of Carg24561 vs. TAIR10
Match: AT5G51010.1 (Rubredoxin-like superfamily protein)

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-41
Identity = 84/155 (54.19%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 9   LRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSL-RKQNSAVAAAPKVSMR 68
           +  QLPP   + +Y          +  +L+ S F P  ++  L  K++ + ++AP+ SMR
Sbjct: 1   MAMQLPP---TTLYAGRSSVVLPPTTPTLQRSSFLPYYSMRLLGNKKSLSKSSAPRFSMR 60

Query: 69  VASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKA 128
           V+SKQAYICRDCGYIYNDRTPF+KLPD YFCPVC APKRRFR Y   V+KN N+ D RKA
Sbjct: 61  VSSKQAYICRDCGYIYNDRTPFDKLPDNYFCPVCAAPKRRFRAYMPDVSKNVNDKDVRKA 120

Query: 129 RKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNN 163
           RKA++Q+DEA+GK LPI  AVG++AL  LY Y+N+
Sbjct: 121 RKAELQRDEAVGKALPIGIAVGVLALAALYFYVNS 152

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BLAST of Carg24561 vs. TAIR10
Match: AT5G17170.1 (rubredoxin family protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-07
Identity = 33/110 (30.00%), Postives = 52/110 (47.27%), Query Frame = 0


Query: 47  NIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKR 106
           ++  L K+ +      K++    ++  +IC DCG+IY     F++ PD Y CP C APK+
Sbjct: 170 DVKKLNKRPAPPRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQCIAPKK 229

Query: 107 RFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVL-PIAAAVGIVALVG 156
           RF  Y+                   +   +AIG  L PI   VG++A +G
Sbjct: 230 RFAKYD-------------------VNTGKAIGGGLPPIGVIVGLLAGLG 260

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BLAST of Carg24561 vs. Swiss-Prot
Match: sp|P04170|RUBR1_DESDA (Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) OX=525146 GN=rd1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.6e-06
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 72  QAYICRDCGYIY----NDRTPFEKLPDKYFCPVCGAPKRRFRP 111
           Q Y+C  CGY Y    +D  PF++LPD + CPVCG  K +F P
Sbjct: 2   QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 44

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BLAST of Carg24561 vs. Swiss-Prot
Match: sp|O26258|RUBR_METTH (Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=MTH_155 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.6e-06
Identity = 23/60 (38.33%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 64  VSMRVASKQAYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPYE 113
           +   V++ + Y CR CGYIY+             TPFE LP+ + CP CGA K+ F+P +
Sbjct: 4   IKSEVSAMKRYKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKPLD 63

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BLAST of Carg24561 vs. Swiss-Prot
Match: sp|P24297|RUBR_PYRFU (Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rub PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 2.8e-05
Identity = 21/50 (42.00%), Postives = 29/50 (58.00%), Query Frame = 0


Query: 74  YICRDCGYIYND-----------RTPFEKLPDKYFCPVCGAPKRRFRPYE 113
           ++C+ CGYIY++            T FE+LPD + CP+CGAPK  F   E
Sbjct: 4   WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEKLE 53

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BLAST of Carg24561 vs. Swiss-Prot
Match: sp|Q9AL94|RUBR_CLOAB (Rubredoxin OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=rd PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.4e-04
Identity = 21/51 (41.18%), Postives = 27/51 (52.94%), Query Frame = 0


Query: 74  YICRDCGYIY-----------NDRTPFEKLPDKYFCPVCGAPKRRFRPYEQ 114
           Y+C  CGYIY           N  T FE +PD + CP+CG  K +F P E+
Sbjct: 4   YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQFEPSEE 54

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BLAST of Carg24561 vs. Swiss-Prot
Match: sp|P58992|RUBR1_CHLTE (Rubredoxin-1 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) OX=194439 GN=rub1 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04
Identity = 19/50 (38.00%), Postives = 28/50 (56.00%), Query Frame = 0


Query: 73  AYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPY 112
           +++C +CGYIY+              PF+KLPD + CPVC  PK +F  +
Sbjct: 16  SWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65

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BLAST of Carg24561 vs. TrEMBL
Match: tr|A0A0A0LNF5|A0A0A0LNF5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000640 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 5.4e-70
Identity = 141/172 (81.98%), Postives = 150/172 (87.21%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRK 60
           MAS+SA+SL F LPP  H K+ QEDGG DR+S F       LSLKSSF SPLR IPSLRK
Sbjct: 1   MASISASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRK 60

Query: 61  QNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYE 120
           QNS VAAA PK SMRVASKQAYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 121 QSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           Q+V+KN NEFD RKARKAQIQKDEAIGKVLPIAAA+GIVALVGLYLYLN+AF
Sbjct: 121 QTVSKNDNEFDVRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSAF 172

[Close]

BLAST of Carg24561 vs. TrEMBL
Match: tr|A0A1S3CLS9|A0A1S3CLS9_CUCME (uncharacterized protein LOC103502280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502280 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 4.5e-69
Identity = 140/172 (81.40%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRK 60
           MASVSA+SL F LPP  H K+ QEDGG DR+S F       LSLKSSF SPLR IPSLR+
Sbjct: 1   MASVSASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRR 60

Query: 61  QNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYE 120
           QNS VAAA PK SMRVASKQAYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 121 QSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           Q+V KN NEFD RKARKAQIQKDEAIGKVLPIAAA+GIVALVGLYLYLN+ F
Sbjct: 121 QTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of Carg24561 vs. TrEMBL
Match: tr|E5GBM0|E5GBM0_CUCME (Electron transporter OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 4.5e-69
Identity = 140/172 (81.40%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRK 60
           MASVSA+SL F LPP  H K+ QEDGG DR+S F       LSLKSSF SPLR IPSLR+
Sbjct: 1   MASVSASSLSFHLPPKPHYKLNQEDGGTDRNSMFLDSASNRLSLKSSFISPLRKIPSLRR 60

Query: 61  QNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYE 120
           QNS VAAA PK SMRVASKQAYICRDCGYIYNDRTPF+KLPDKYFCPVCGAPKRRFRPYE
Sbjct: 61  QNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRTPFDKLPDKYFCPVCGAPKRRFRPYE 120

Query: 121 QSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           Q+V KN NEFD RKARKAQIQKDEAIGKVLPIAAA+GIVALVGLYLYLN+ F
Sbjct: 121 QTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAALGIVALVGLYLYLNSVF 172

[Close]

BLAST of Carg24561 vs. TrEMBL
Match: tr|A0A1S3CMV6|A0A1S3CMV6_CUCME (uncharacterized protein LOC103502280 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502280 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.7e-58
Identity = 119/137 (86.86%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 29  DRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRT 88
           D  S+ LSLKSSF SPLR IPSLR+QNS VAAA PK SMRVASKQAYICRDCGYIYNDRT
Sbjct: 4   DSASNRLSLKSSFISPLRKIPSLRRQNSVVAAASPKFSMRVASKQAYICRDCGYIYNDRT 63

Query: 89  PFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAA 148
           PF+KLPDKYFCPVCGAPKRRFRPYEQ+V KN NEFD RKARKAQIQKDEAIGKVLPIAAA
Sbjct: 64  PFDKLPDKYFCPVCGAPKRRFRPYEQTVNKNDNEFDLRKARKAQIQKDEAIGKVLPIAAA 123

Query: 149 VGIVALVGLYLYLNNAF 165
           +GIVALVGLYLYLN+ F
Sbjct: 124 LGIVALVGLYLYLNSVF 140

[Close]

BLAST of Carg24561 vs. TrEMBL
Match: tr|A0A1U7Z7C8|A0A1U7Z7C8_NELNU (uncharacterized protein LOC104591875 OS=Nelumbo nucifera OX=4432 GN=LOC104591875 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.4e-48
Identity = 109/165 (66.06%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 1   MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSP-LRNIPSLRKQNSAVA 60
           + +V+A+     L P+ H        G  R S   +LKSSFFSP L  + S  +Q  + A
Sbjct: 9   LKTVAASPSSSPLSPSAHV-------GLRRPSHRFALKSSFFSPSLHLLFSPPQQPLSSA 68

Query: 61  AAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNA 120
           AAP+ SMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFR YE +VTKNA
Sbjct: 69  AAPRFSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRTYEPAVTKNA 128

Query: 121 NEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF 165
           N+ D RKARKAQIQ DEAIG+ LPIA  VGI AL GLY YLNNAF
Sbjct: 129 NDTDVRKARKAQIQSDEAIGRALPIAIVVGIAALAGLYFYLNNAF 166

The following BLAST results are available for this feature:

BLAST of Carg24561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927654.1	3.6e-86	100.00	uncharacterized protein LOC111434474 [Cucurbita moschata] >XP_022974453.1 unchar...	[more]
XP_023531329.1	8.1e-86	99.39	uncharacterized protein LOC111793604 [Cucurbita pepo subsp. pepo]	[more]
XP_004138023.1	8.1e-70	81.98	PREDICTED: uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus] >KG...	[more]
XP_023516579.1	8.1e-70	83.04	uncharacterized protein LOC111780418 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022987160.1	4.0e-69	82.46	uncharacterized protein LOC111484793 isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg24561 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G51010.1	1.9e-41	54.19	Rubredoxin-like superfamily protein	[more]
AT5G17170.1	3.1e-07	30.00	rubredoxin family protein	[more]

BLAST of Carg24561 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P04170\|RUBR1_DESDA	9.6e-06	48.84	Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) OX=52...	[more]
sp\|O26258\|RUBR_METTH	9.6e-06	38.33	Probable rubredoxin OS=Methanothermobacter thermautotrophicus (strain ATCC 29096...	[more]
sp\|P24297\|RUBR_PYRFU	2.8e-05	42.00	Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1...	[more]
sp\|Q9AL94\|RUBR_CLOAB	2.4e-04	41.18	Rubredoxin OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /...	[more]
sp\|P58992\|RUBR1_CHLTE	4.0e-04	38.00	Rubredoxin-1 OS=Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 1038...	[more]

BLAST of Carg24561 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LNF5\|A0A0A0LNF5_CUCSA	5.4e-70	81.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000640 PE=4 SV=1	[more]
tr\|A0A1S3CLS9\|A0A1S3CLS9_CUCME	4.5e-69	81.40	uncharacterized protein LOC103502280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|E5GBM0\|E5GBM0_CUCME	4.5e-69	81.40	Electron transporter OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3CMV6\|A0A1S3CMV6_CUCME	4.7e-58	86.86	uncharacterized protein LOC103502280 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1U7Z7C8\|A0A1U7Z7C8_NELNU	3.4e-48	66.06	uncharacterized protein LOC104591875 OS=Nelumbo nucifera OX=4432 GN=LOC104591875...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005506	iron ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR024934	Rubredoxin-like_dom
IPR024935	Rubredoxin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005506	iron ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24561-RA	Carg24561-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.20.28.10		coord: 71..111 e-value: 1.4E-13 score: 52.3
None	No IPR available	PANTHER	PTHR45299	FAMILY NOT NAMED	coord: 21..163
None	No IPR available	SUPERFAMILY	SSF57802	Rubredoxin-like	coord: 71..117
IPR024935	Rubredoxin domain	PFAM	PF00301	Rubredoxin	coord: 74..108 e-value: 2.0E-5 score: 24.4
IPR024935	Rubredoxin domain	CDD	cd00730	rubredoxin	coord: 74..111 e-value: 9.80014E-13 score: 58.4714
IPR024934	Rubredoxin-like domain	PROSITE	PS50903	RUBREDOXIN_LIKE	coord: 71..111 score: 12.122

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24561	Cla019316	Watermelon (97103) v1	carwmB0606
Carg24561	Csa1G000640	Cucumber (Chinese Long) v2	carcuB0636
Carg24561	MELO3C026168	Melon (DHL92) v3.5.1	carmeB0612
Carg24561	ClCG06G018300	Watermelon (Charleston Gray)	carwcgB0591
Carg24561	CSPI01G00140	Wild cucumber (PI 183967)	carcpiB0642
Carg24561	CmaCh11G000080	Cucurbita maxima (Rimu)	carcmaB0854
Carg24561	CmaCh10G000230	Cucurbita maxima (Rimu)	carcmaB0853
Carg24561	CmoCh10G000200	Cucurbita moschata (Rifu)	carcmoB0829
Carg24561	Lsi06G016770	Bottle gourd (USVL1VR-Ls)	carlsiB554
Carg24561	CsGy1G000110	Cucumber (Gy14) v2	carcgybB0608
Carg24561	MELO3C026168.2	Melon (DHL92) v3.6.1	carmedB0618
Carg24561	CsaV3_1G000140	Cucumber (Chinese Long) v3	carcucB0643
Carg24561	Cla97C06G128060	Watermelon (97103) v2	carwmbB0634
Carg24561	Bhi02G000474	Wax gourd	carwgoB0724

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg24561	Carg10247	Silver-seed gourd	carcarB391

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24561	Cucumber (Gy14) v1	carcgyB0684
Carg24561	Cucurbita moschata (Rifu)	carcmoB0830
Carg24561	Cucurbita pepo (Zucchini)	carcpeB0863
Carg24561	Cucurbita pepo (Zucchini)	carcpeB0864