CmoCh08G001130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G001130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Ribosome inactivating protein) (3.2.2.22)
Location	Cmo_Chr08 : 583200 .. 588238 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAAATCCTTAGCCCTTTCGTTTCTATTTCTCACCATCTTCCTCAACACTCGTCCCGCTGATGCCAATGTGCGTTTCGACTTGTCCAGTGCCACAAGCTCATCTTACAAAACTTTTATAAAAAATTTGAGGGAAGCACTTCCAAAGGATGGGAAAGTGTATGACATTCCTGTGTTACTTTCGACTGTAATGGACTCGAGGCGCTTCATACTAATAGATCTCGTCAATTACGACGGTCAATCCATCACAGCTGCCATAGATGTGCTAAACGTATATATCGTAGCATACAGCACAGGCACAGTGTCCTACTTTTTTCAGCAAGTTCCAGCTCAAGCTCCCAAATTGCTGTTCAAAGGCACTCAGCAAAGGACACTTCCATACACAGGTAATTACGAGAACCTTCAAACTGCTGCAAAAAAGCTAAGAGAAAACATCGAGCTTGGACTCCCAGCTCTAGACAGTGCCATTACCACCTTGTTTCATTACAACGCCGAGGCTGCTGCTTCAGCGCTGCTCGTTCTCATTCAAACGACCTCTGAAGCTGCAAGGTTTAGATATATCGAGCTACAGATTGCTAACAATGTTGGGACGAAATTTAAGCCAAGTCAAACGATCATAAGCTTGGAAAACAACTGGTCTGCGCTCTCCAAACAAATCCAAATTGCCAAGAACAAAAATGGGCAATTTGAAACTCCAGTTATCCTTATAGACCCTCAAGGAAATCGTGTTCAAATAACAAACGTGACTTCGAACGTTGTGACCCAGAACATCAAGCTGCTGCTGAACATTGGTGCAACAGTTGATACAATGGCCGCCAACGACGATGTGGATGAGATGACGAGCGGTGTTCCCATAAGGCTATCAAGCTGTGGCCATGAGATGGAAAGGAAGTCAGTGGAGAATGGCCGGCATGCAAATTATGTATCGGTGTAACTTTTGAAGTTACAGGTATAGTGGGTATTAAGACTTTAGTAGTCCACCCACAGAAATAAGGCATGTGTTCATTGTGTTTATGTGTTTTATTTCTTAAATGCTAAATAAAATGGAACGATGAAGTCCCTATGACCGATGAAGTCCCTATGACTCGACTAAACGGAATAAACGGGTCGTTGGGTATTATGGAGAAAGTTTATGATATAGATCTTGTGAGATCTCACCTCGGTTGGAGAGGGGAACAGAACATTCTTTATAAGGGTGTAGAAACCTCTCTCTAACAAACGTGTTTTAAAATTTTGAAGGGAAGCTCGAAAGGAAAAACTCAAAGAAGACAATATATGTTAGTTGTGAGCTCGATACATTGAGGCTGTCTCCTAGGAATTTAGATTTTTTTTTTTCTCTTTACATGATTGATATTTTTAGTTGGTTCTCGTCCCATTAGATTCCTCTTTGAAGAGATCTATAATTTTGAAGAATTCAGAGTTGTTGAGATAATAATCGAAGTATTTGAACATGAAAATAATCGAATAGTGAAATCGAAGATGTGTGCATAAAAGATGACCAATTTAGTTGGACCAATCCAATTCAATTTTTGGGTTATTTTGACGATGTTGATATTTTCTCCTATTTTCGAGACTACATACGAGACTCAAAGAAAGTTGGAGTGGAAAAACAGCAAGTTTTGTCTTCGTCCCGTAGACATCTCTTACCACCTATATTTATTGAAGTAAAAAAAAAAAAAAAAAAAAGTTGTAAATCGAGATAAGATATTGATTGGTGGGAGAGTGAACGAAGAAAATATCTATATTAAACTCTTTTTATGCTTATTACCATCATTTTTATGTGTTTGATACACAAAAACCTATTATTGATATACTATTCCTACGCCTATCAATGATAGATATCTATTAGTGATACATATAGGCGTAACAAAAATTATATTACGTGTATATTTGTATTCAACAAGGGATATTACGCCCATTGATCATTGCATTGTAATTTGAGCCGAAGCTAGTGAGGTTCTAGGCGCCTTTGGGCGATATTGTGGCTTTCTAGAAGATTCACATTTGAGTCTCAAGATCTTTTTTTTTTTTTTTGGAGATTTGTGATAGTTTATTATTCCTCGAGTGTTTGTTATTGTTATTCCTTTATTTGGTTCTTGATAATCCCTTTGCTAGAACTCTTTTCCTGCCTGAATTATCGCATCTTGGGATGACTTTGGAGAGAGTTTCTTAATCAAGTATTTTCTACGAATGATGTAAAGGATATCATGACATTTAAGTTATGAGAGAATGAATCACTCAGGGATCCGTATGTGAGGTTTAGAAAGTTGTAGCAAAAAATGTGGTTTGCCCTATTGTGTACCGTTAGAAATGTTCACAAAAGTTTGAACATAGTGATATGAAACTCTAGGACCTAAGAACCTTTGTGGATATATAAACCCTAAGACTACAAATGCTAAAACTCCCAAATCAAGATGATTTCATCCCAATGATATCAAACTTCGAGAATTCAATCTAACAACCTTATTAAAAAACAAGATTTTTAAATCTAAAATATCTAAGAACCCCAAAACAATAAGAAATCAACCCAAAGAAAAGATTGAGATCGAGATTAGAATTACTCATGCCTCAGTTTATATCACATAGTTTCACCAACTTATAACATAGTCTCACCAACTCCAAGAGGTATGTGTTGTCTTTAAGCATTTGGAGCTTTGATGGAAAAGTGAATCTAAAAACATAGTAAAATTTCTTATTTGGATTAGTGATAAGACAATTGTTGTAATTACAGACAAAATTTACCGATTGCAACCGAGCTTTGTGGCACTATTCGAGGAAGCAATGATTCAAGTTTGGGGTTTGATACCTTGTAAATGTGCAAGTTATTTGGGTAGTATTCACTTTGAGAATGAATTCTATGCGTTTATCCAAATTTTATTGTGAAATCATGTCTAATTCATCCGTTTGCATCAATAGTTAAATTATAAGATTGTAGTTTTATAAGCTCTGAAGGACTAACATAAGAGAGAAAACGTGCTTCAACATGTGAACCCTATCTCTCCATTCATATATCAATGTCATGTGTTATCAAAATTGGTTGTACCAATAATTCCAAGAGATGCGGAAAGTTGTGGAGGGCTATAAACCATACAATTGGTATCCCATGGTACGTTGTTTTCTTCATAGATTTTTTTTTTTTTGGTTAAATTATAATTTTAGTTTTTGAACGTCTATGATTTTTTAGTTTGAATGTATAGAGATTTTGTTAAGTTTATATTTATTAAGTTTGTGTTTAGACGGTACAAAAAGTAGCTATGTTAAATCTAAAGATCGAACTATCTTGAATTCTCCATCTACCAGCTACAGGTTGGGATTCGATTCCCGTTATACATGACGAGTATCTTCAAAACAAAATTGTTAGTACTTTATGGGAAACTTCTCAGCAAGTTCCTCAATATCGTTCGTCCTTAGGGCCATTATGCTCCTTCAGGTATTCTCGTATCCTTTCGGCTACGGTGCTTGAAAATGTACGTACACGAATGGTTCCTAGACATGGACCACACAGGAAAAAGGGATTATACTATAGTACTCTTAGATGGCTCCTTAAAAACCCCAGCTTGTGATGCTCCAAAGGCATCCAAAGTCCTCTAGTGGAAAACATCCTAAGAGGAGCTCAAACAGTCAAAGGCGATGTCAGCTTCCGTTTATCGGGTGCAACAACCAGTTCCTATGGAGTTTTCATTTCAAATCTGAGAAAAGCTCTTCCATATGAAAAGAAATTGTACGATATTCCTCTGTTACGTTCCGATCTTTCAGGTTCACAGCGCTACACATTAGTCCATCTCACAAATTACGCCGATCAAACCATTTCGGTTGCCATAGACGTAACAAACGTGTATATTATGGGGTATCGTGCTGGTAACGTTTCCTACTTTTCCTACTTTTTCGGATTGGATTGGGTAGAGTAGTCGGGTTGTTTTTCTTTTTTAAAAAAAAAATTCTATTTAACCTGAATATAGGTTATATGATGTAAATTACATTGATAACTAAAAATTCATAAAGCTCAAATTTCAAATAATTTTAAAAGTAGAGTAGGGTAGTGTCAGACTGTAACCCTATTTTTTAGTTTCTCAGGTTGACCTGACTAAAAAAATGTTAACCTACAAAGAGGCTCCAATTTTCTGCTTTCTAAAACGTTCAACCCAACCCAAACTATAAAATAAAAATAATTTAATCCAACCCAACATTTCTAATTTCAGATGAGTTGCATGAGTTGATCGAGTTATTAGATTATATAAACACGTCAAAGTTAGATGAACTTGACTCTGAGAATGTTTCTTAATTCACCCCACCTAAATGGTGTGAAAGTTATCTTATTTATAATCAAATAAATTACAAGGATATGGAAATAGTAATAAATGGAAAGATATTTGTCTTATAATAAAATATCAAATATGATATACATGGTAAACTATAATTTATTACTAAATATCCTTAACATACTCATTGAAGAAGATCAGAGGATTTAACTCATTTTCAAAAGGGAAGGCGGTTGAATACACTTTGAATCAAACCCACGCTCGTCGGTAAACTTCCTACATAGATTTGCGAGCAAATAGTGAATGATCGAGCTCGATACATTGAGGCTATTGTTGTGATCGAAGCCTCCTAGGAATCCAGATTTTTTTTTTTTCCGTTTACATGATTGATATTTTTAGTTGATTCTCGTCCCATTAGATTCCTCTTGAAGAGATCTATAATTTTGAAGAATCCAGAGTTGTTGAGATAATAATCGAAGTGTTTGAACATGAAAATAATCGAATAGTGAAATCGAAGATGTGTGCATAAAAGATGACCAATTTAGTTGGACCAATCCAATTCAATTCCTGAGTTATTTTGACGATGTTGATATTTTCTCCTATTTTCGAGACTACATACGAGACTCAAAGAAAGTTGGAGTGGAAAAACAGCAAGTTTTGTCTTCGCCATGTAGACATCTCTTACCACCTATATTTATTGAAGTAAAAAAAAAAAAAAAAAGTTATAAATCGAGATAAGATATTGATTGGTGGGAGAGTGAACGAAGAAAATATCTAG

mRNA sequence

ATGAACAAATCCTTAGCCCTTTCGTTTCTATTTCTCACCATCTTCCTCAACACTCGTCCCGCTGATGCCAATGTGCGTTTCGACTTGTCCAGTGCCACAAGCTCATCTTACAAAACTTTTATAAAAAATTTGAGGGAAGCACTTCCAAAGGATGGGAAAGTGTATGACATTCCTGTGTTACTTTCGACTGTAATGGACTCGAGGCGCTTCATACTAATAGATCTCGTCAATTACGACGGTCAATCCATCACAGCTGCCATAGATGTGCTAAACGTATATATCGTAGCATACAGCACAGGCACAGTGTCCTACTTTTTTCAGCAAGTTCCAGCTCAAGCTCCCAAATTGCTGTTCAAAGGCACTCAGCAAAGGACACTTCCATACACAGGTAATTACGAGAACCTTCAAACTGCTGCAAAAAAGCTAAGAGAAAACATCGAGCTTGGACTCCCAGCTCTAGACAGTGCCATTACCACCTTGTTTCATTACAACGCCGAGGCTGCTGCTTCAGCGCTGCTCGTTCTCATTCAAACGACCTCTGAAGCTGCAAGGTTTAGATATATCGAGCTACAGATTGCTAACAATGTTGGGACGAAATTTAAGCCAAGTCAAACGATCATAAGCTTGGAAAACAACTGGTCTGCGCTCTCCAAACAAATCCAAATTGCCAAGAACAAAAATGGGCAATTTGAAACTCCAGTTATCCTTATAGACCCTCAAGGAAATCGTGTTCAAATAACAAACGTGACTTCGAACGTTGTGACCCAGAACATCAAGCTGCTGCTGAACATTGGTGCAACAGTTGATACAATGGCCGCCAACGACGATGTGGATGAGATGACGAGCGGTGTTCCCATAAGGCTATCAAGCTGTGGCCATGAGATGGAAAGGAAGTCAGTGGAGAATGGCCGGCATGCAAATTATGTATCGGTACAAAATTTACCGATTGCAACCGAGCTTTGTGGCACTATTCGAGGAAGCAATGATTCAAGTTGGGATTCGATTCCCGTTATACATGACGAGTATCTTCAAAACAAAATTGTTAGTACTTTATGGGAAACTTCTCAGCAAGTTCCTCAATATCGTTCGTCCTTAGGGCCATTATGCTCCTTCAGGTATTCTCGTATCCTTTCGGCTACGGTGCTTGAAAATGTACGTACACGAATGGTTCCTAGACATGGACCACACAGGAAAAAGGGATTATACTATAGCATCCAAAGTCCTCTAGTGGAAAACATCCTAAGAGGAGCTCAAACAGTCAAAGGCGATGTCAGCTTCCGTTTATCGGGTGCAACAACCAGTTCCTATGGAGTTTTCATTTCAAATCTGAGAAAAGCTCTTCCATATGAAAAGAAATTGTACGATATTCCTCTGTTACGTTCCGATCTTTCAGGTTCACAGCGCTACACATTAGTCCATCTCACAAATTACGCCGATCAAACCATTTCGGTTGCCATAGACATTCCTCTTGAAGAGATCTATAATTTTGAAGAATCCAGAGTTGTTGAGATAATAATCGAAGTGTTTGAACATGAAAATAATCGAATAATATTGATTGGTGGGAGAGTGAACGAAGAAAATATCTAG

Coding sequence (CDS)

ATGAACAAATCCTTAGCCCTTTCGTTTCTATTTCTCACCATCTTCCTCAACACTCGTCCCGCTGATGCCAATGTGCGTTTCGACTTGTCCAGTGCCACAAGCTCATCTTACAAAACTTTTATAAAAAATTTGAGGGAAGCACTTCCAAAGGATGGGAAAGTGTATGACATTCCTGTGTTACTTTCGACTGTAATGGACTCGAGGCGCTTCATACTAATAGATCTCGTCAATTACGACGGTCAATCCATCACAGCTGCCATAGATGTGCTAAACGTATATATCGTAGCATACAGCACAGGCACAGTGTCCTACTTTTTTCAGCAAGTTCCAGCTCAAGCTCCCAAATTGCTGTTCAAAGGCACTCAGCAAAGGACACTTCCATACACAGGTAATTACGAGAACCTTCAAACTGCTGCAAAAAAGCTAAGAGAAAACATCGAGCTTGGACTCCCAGCTCTAGACAGTGCCATTACCACCTTGTTTCATTACAACGCCGAGGCTGCTGCTTCAGCGCTGCTCGTTCTCATTCAAACGACCTCTGAAGCTGCAAGGTTTAGATATATCGAGCTACAGATTGCTAACAATGTTGGGACGAAATTTAAGCCAAGTCAAACGATCATAAGCTTGGAAAACAACTGGTCTGCGCTCTCCAAACAAATCCAAATTGCCAAGAACAAAAATGGGCAATTTGAAACTCCAGTTATCCTTATAGACCCTCAAGGAAATCGTGTTCAAATAACAAACGTGACTTCGAACGTTGTGACCCAGAACATCAAGCTGCTGCTGAACATTGGTGCAACAGTTGATACAATGGCCGCCAACGACGATGTGGATGAGATGACGAGCGGTGTTCCCATAAGGCTATCAAGCTGTGGCCATGAGATGGAAAGGAAGTCAGTGGAGAATGGCCGGCATGCAAATTATGTATCGGTACAAAATTTACCGATTGCAACCGAGCTTTGTGGCACTATTCGAGGAAGCAATGATTCAAGTTGGGATTCGATTCCCGTTATACATGACGAGTATCTTCAAAACAAAATTGTTAGTACTTTATGGGAAACTTCTCAGCAAGTTCCTCAATATCGTTCGTCCTTAGGGCCATTATGCTCCTTCAGGTATTCTCGTATCCTTTCGGCTACGGTGCTTGAAAATGTACGTACACGAATGGTTCCTAGACATGGACCACACAGGAAAAAGGGATTATACTATAGCATCCAAAGTCCTCTAGTGGAAAACATCCTAAGAGGAGCTCAAACAGTCAAAGGCGATGTCAGCTTCCGTTTATCGGGTGCAACAACCAGTTCCTATGGAGTTTTCATTTCAAATCTGAGAAAAGCTCTTCCATATGAAAAGAAATTGTACGATATTCCTCTGTTACGTTCCGATCTTTCAGGTTCACAGCGCTACACATTAGTCCATCTCACAAATTACGCCGATCAAACCATTTCGGTTGCCATAGACATTCCTCTTGAAGAGATCTATAATTTTGAAGAATCCAGAGTTGTTGAGATAATAATCGAAGTGTTTGAACATGAAAATAATCGAATAATATTGATTGGTGGGAGAGTGAACGAAGAAAATATCTAG

Homology

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BLAST of CmoCh08G001130 vs. Swiss-Prot
Match: RIP_CUCMO (Ribosome-inactivating protein cucurmosin OS=Cucurbita moschata PE=1 SV=2)

HSP 1 Score: 461.8 bits (1187), Expect = 9.8e-129
Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 1


Query: 24  NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 83
           NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI
Sbjct: 1   NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 60

Query: 84  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 143
           TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR
Sbjct: 61  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 120

Query: 144 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 203
           ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS
Sbjct: 121 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 180

Query: 204 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIKLLLN 263
           QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNI+LLLN
Sbjct: 181 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIQLLLN 240

Query: 264 IGAT 268
           IGAT
Sbjct: 241 IGAT 244

[Close]

BLAST of CmoCh08G001130 vs. Swiss-Prot
Match: RIP2_MOMBA (Ribosome-inactivating protein momordin II OS=Momordica balsamina PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 3.3e-84
Identity = 167/267 (62.55%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M K L LSFL + IF+    A  +V FDLS+AT+ +Y  FI++ R  LP   KVYDIP+L
Sbjct: 1   MVKCLLLSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIEDFRATLPFSHKVYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKG 120
            ST+ DSRRFIL+DL +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKG
Sbjct: 61  YSTISDSRRFILLDLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKG 120

Query: 121 TQQRTLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTS 180
           T++ TLPYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+
Sbjct: 121 TRKITLPYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTA 180

Query: 181 EAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQ 240
           EAARF+YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI P 
Sbjct: 181 EAARFKYIERHVAKYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIKPT 240

Query: 241 GNRVQITNVTSNVVTQNIKLLLNIGAT 268
           G R Q+TNV S+VV  NIKLLLN  A+
Sbjct: 241 GERFQVTNVDSDVVKGNIKLLLNSRAS 267

[Close]

BLAST of CmoCh08G001130 vs. Swiss-Prot
Match: RIP3_MOMCH (Ribosome-inactivating protein beta-momorcharin OS=Momordica charantia GN=MAP30 PE=1 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 1.2e-83
Identity = 166/267 (62.17%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M K L LSFL + IF+    A  +V FDLS+AT+ +Y  FI++ R  LP   KVYDIP+L
Sbjct: 1   MVKCLLLSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIEDFRATLPFSHKVYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKG 120
            ST+ DSRRFIL++L +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKG
Sbjct: 61  YSTISDSRRFILLNLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKG 120

Query: 121 TQQRTLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTS 180
           T++ TLPYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+
Sbjct: 121 TRKITLPYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTA 180

Query: 181 EAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQ 240
           EAARF+YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI P 
Sbjct: 181 EAARFKYIERHVAKYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIKPT 240

Query: 241 GNRVQITNVTSNVVTQNIKLLLNIGAT 268
           G R Q+TNV S+VV  NIKLLLN  A+
Sbjct: 241 GERFQVTNVDSDVVKGNIKLLLNSRAS 267

[Close]

BLAST of CmoCh08G001130 vs. Swiss-Prot
Match: RIPT_TRIKI (Ribosome-inactivating protein alpha-trichosanthin OS=Trichosanthes kirilowii PE=1 SV=2)

HSP 1 Score: 296.2 bits (757), Expect = 7.1e-79
Identity = 169/283 (59.72%), Postives = 205/283 (72.44%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M + L LS L LT+FL T   + +V F LS ATSSSY  FI NLR+ALP + K+YDIP+L
Sbjct: 1   MIRFLVLSLLILTLFLTTPAVEGDVSFRLSGATSSSYGVFISNLRKALPNERKLYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPA-QAPKLLFK 120
            S++  S+R+ LI L NY  ++I+ AIDV NVYI+ Y  G  SYFF +  A +A K +FK
Sbjct: 61  RSSLPGSQRYALIHLTNYADETISVAIDVTNVYIMGYRAGDTSYFFNEASATEAAKYVFK 120

Query: 121 GTQQR-TLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQT 180
              ++ TLPY+GNYE LQTAA K+RENI LGLPALDSAITTLF+YNA +AASAL+VLIQ+
Sbjct: 121 DAMRKVTLPYSGNYERLQTAAGKIRENIPLGLPALDSAITTLFYYNANSAASALMVLIQS 180

Query: 181 TSEAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILID 240
           TSEAAR+++IE QI   V   F PS  IISLEN+WSALSKQIQIA   NGQFE+PV+LI+
Sbjct: 181 TSEAARYKFIEQQIGKRVDKTFLPSLAIISLENSWSALSKQIQIASTNNGQFESPVVLIN 240

Query: 241 PQGNRVQITNVTSNVVTQNIKLLLNIGATVDTMAANDDVDEMT 282
            Q  RV ITNV + VVT NI LLLN     + MAA DD   MT
Sbjct: 241 AQNQRVTITNVDAGVVTSNIALLLN----RNNMAAMDDDVPMT 279

[Close]

BLAST of CmoCh08G001130 vs. Swiss-Prot
Match: RIPS_TRIKI (Ribosome-inactivating protein karasurin-C OS=Trichosanthes kirilowii PE=1 SV=2)

HSP 1 Score: 291.2 bits (744), Expect = 2.3e-77
Identity = 165/278 (59.35%), Postives = 201/278 (72.30%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M + L  S L LT+FL     + +V F LS ATSSSY  FI NLR+ALP + K+YDIP+L
Sbjct: 1   MIRFLVFSLLILTLFLTAPAVEGDVSFRLSGATSSSYGVFISNLRKALPYERKLYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPA-QAPKLLFK 120
            ST+  S+R+ LI L NY  ++I+ AIDV NVY++ Y  G  SYFF +  A +A K +FK
Sbjct: 61  RSTLPGSQRYALIHLTNYADETISVAIDVTNVYVMGYRAGDTSYFFNEASATEAAKYVFK 120

Query: 121 GTQQR-TLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQT 180
             +++ TLPY+GNYE LQ AA K+RENI LGLPALDSAITTLF+YNA +AASAL+VLIQ+
Sbjct: 121 DAKRKVTLPYSGNYERLQIAAGKIRENIPLGLPALDSAITTLFYYNANSAASALMVLIQS 180

Query: 181 TSEAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILID 240
           TSEAAR+++IE QI   V   F PS  IISLEN+WSALSKQIQIA   NGQFETPV+LI+
Sbjct: 181 TSEAARYKFIEQQIGKRVDKTFLPSLAIISLENSWSALSKQIQIASTNNGQFETPVVLIN 240

Query: 241 PQGNRVQITNVTSNVVTQNIKLLLNIGATVDTMAANDD 277
            Q  RV ITNV + VVT NI LLLN     + MAA DD
Sbjct: 241 AQNQRVTITNVDAGVVTSNIALLLN----RNNMAAIDD 274

[Close]

BLAST of CmoCh08G001130 vs. TrEMBL
Match: D0VWS7_CUCMO (rRNA N-glycosidase OS=Cucurbita moschata PE=1 SV=1)

HSP 1 Score: 461.8 bits (1187), Expect = 1.1e-126
Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 1


Query: 24  NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 83
           NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI
Sbjct: 1   NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 60

Query: 84  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 143
           TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR
Sbjct: 61  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 120

Query: 144 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 203
           ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS
Sbjct: 121 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 180

Query: 204 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIKLLLN 263
           QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNI+LLLN
Sbjct: 181 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIQLLLN 240

Query: 264 IGAT 268
           IGAT
Sbjct: 241 IGAT 244

[Close]

BLAST of CmoCh08G001130 vs. TrEMBL
Match: W0LQW1_MOMCH (rRNA N-glycosidase OS=Momordica charantia PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.8e-82
Identity = 167/267 (62.55%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M K L LSFL + IF+    A  +V FDLS+AT+ +Y  FI+N R  LP   KVYDIP+L
Sbjct: 1   MVKCLVLSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIENFRATLPFSHKVYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKG 120
            ST+ DSRRFIL++L +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKG
Sbjct: 61  YSTISDSRRFILLNLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKG 120

Query: 121 TQQRTLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTS 180
           T++ TLPYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+
Sbjct: 121 TRKITLPYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTA 180

Query: 181 EAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQ 240
           EAARF+YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI P 
Sbjct: 181 EAARFKYIERHVARYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIKPT 240

Query: 241 GNRVQITNVTSNVVTQNIKLLLNIGAT 268
           G R Q+TNV S+VV  NIKLLLN  A+
Sbjct: 241 GERFQVTNVDSDVVKGNIKLLLNSRAS 267

[Close]

BLAST of CmoCh08G001130 vs. TrEMBL
Match: Q5PZ05_MOMCH (rRNA N-glycosidase OS=Momordica charantia PE=3 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.4e-81
Identity = 166/267 (62.17%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M K L LSFL + IF+    A  +V FDLS+AT+ +Y  FI++ R  LP   KVYDIP+L
Sbjct: 1   MVKCLLLSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIEDFRATLPFSHKVYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKG 120
            ST+ DSRRFIL++L +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKG
Sbjct: 61  YSTISDSRRFILLNLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKG 120

Query: 121 TQQRTLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTS 180
           T++ TLPYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+
Sbjct: 121 TRKITLPYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTA 180

Query: 181 EAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQ 240
           EAARF+YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI P 
Sbjct: 181 EAARFKYIERHVAKYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIKPT 240

Query: 241 GNRVQITNVTSNVVTQNIKLLLNIGAT 268
           G R Q+TNV S+VV  NIKLLLN  A+
Sbjct: 241 GERFQVTNVDSDVVKGNIKLLLNSRAS 267

[Close]

BLAST of CmoCh08G001130 vs. TrEMBL
Match: S6CNY4_MOMCH (Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.8e-81
Identity = 164/261 (62.84%), Postives = 203/261 (77.78%), Query Frame = 1


Query: 7   LSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMD 66
           LSFL + IF+    A  +V FDLS+AT+ +Y  FI++ R  LP   KVYDIP+L ST+ D
Sbjct: 1   LSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIEDFRATLPFSHKVYDIPLLYSTISD 60

Query: 67  SRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTL 126
           SRRFIL+DL +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKGT++ TL
Sbjct: 61  SRRFILLDLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITL 120

Query: 127 PYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFR 186
           PYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+EAARF+
Sbjct: 121 PYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTAEAARFK 180

Query: 187 YIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQI 246
           YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI+P G R Q+
Sbjct: 181 YIERHVAKYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIEPTGERFQV 240

Query: 247 TNVTSNVVTQNIKLLLNIGAT 268
           TNV S+VV  NIKLLLN  A+
Sbjct: 241 TNVDSDVVKGNIKLLLNSRAS 261

[Close]

BLAST of CmoCh08G001130 vs. TrEMBL
Match: S6CNA9_MOMCH (Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.0e-81
Identity = 164/261 (62.84%), Postives = 202/261 (77.39%), Query Frame = 1


Query: 7   LSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMD 66
           LSFL + IF+    A  +V FDLS+AT+ +Y  FI++ R  LP   KVYDIP+L ST+ D
Sbjct: 1   LSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIEDFRATLPFSHKVYDIPLLYSTISD 60

Query: 67  SRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTL 126
           SRRFIL+DL +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKGT++ TL
Sbjct: 61  SRRFILLDLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKGTRKITL 120

Query: 127 PYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFR 186
           PYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+EAARF+
Sbjct: 121 PYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTAEAARFK 180

Query: 187 YIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQI 246
           YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI P G R Q+
Sbjct: 181 YIERHVAKYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIKPTGERFQV 240

Query: 247 TNVTSNVVTQNIKLLLNIGAT 268
           TNV S+VV  NIKLLLN  A+
Sbjct: 241 TNVDSDVVKGNIKLLLNSRAS 261

[Close]

BLAST of CmoCh08G001130 vs. NCBI nr
Match: gi|281185483|sp|P84531.2|RIP_CUCMO (RecName: Full=Ribosome-inactivating protein cucurmosin; AltName: Full=rRNA N-glycosidase [Cucurbita moschata])

HSP 1 Score: 461.8 bits (1187), Expect = 1.6e-126
Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 1


Query: 24  NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 83
           NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI
Sbjct: 1   NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 60

Query: 84  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 143
           TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR
Sbjct: 61  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 120

Query: 144 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 203
           ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS
Sbjct: 121 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 180

Query: 204 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIKLLLN 263
           QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNI+LLLN
Sbjct: 181 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIQLLLN 240

Query: 264 IGAT 268
           IGAT
Sbjct: 241 IGAT 244

[Close]

BLAST of CmoCh08G001130 vs. NCBI nr
Match: gi|209156420|pdb|3BWH|A (Chain A, Atomic Resolution Structure Of Cucurmosin, A Novel Type 1 Rip From The Sarcocarp Of Cucurbita Moschata)

HSP 1 Score: 461.8 bits (1187), Expect = 1.6e-126
Identity = 243/244 (99.59%), Postives = 244/244 (100.00%), Query Frame = 1


Query: 24  NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 83
           NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI
Sbjct: 1   NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 60

Query: 84  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 143
           TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR
Sbjct: 61  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 120

Query: 144 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 203
           ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS
Sbjct: 121 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 180

Query: 204 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIKLLLN 263
           QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNI+LLLN
Sbjct: 181 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIQLLLN 240

Query: 264 IGAT 268
           IGAT
Sbjct: 241 IGAT 244

[Close]

BLAST of CmoCh08G001130 vs. NCBI nr
Match: gi|163867055|gb|ABY47624.1| (ribosome-inactivating protein [Cucurbita moschata])

HSP 1 Score: 448.4 bits (1152), Expect = 1.8e-122
Identity = 235/236 (99.58%), Postives = 236/236 (100.00%), Query Frame = 1


Query: 24  NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 83
           NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI
Sbjct: 1   NVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVLLSTVMDSRRFILIDLVNYDGQSI 60

Query: 84  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 143
           TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR
Sbjct: 61  TAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKGTQQRTLPYTGNYENLQTAAKKLR 120

Query: 144 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 203
           ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS
Sbjct: 121 ENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTSEAARFRYIELQIANNVGTKFKPS 180

Query: 204 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIK 260
           QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNI+
Sbjct: 181 QTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQGNRVQITNVTSNVVTQNIQ 236

[Close]

BLAST of CmoCh08G001130 vs. NCBI nr
Match: gi|574452326|gb|AHG25320.1| (ribosome-inactivating protein [Momordica charantia])

HSP 1 Score: 314.3 bits (804), Expect = 4.0e-82
Identity = 167/267 (62.55%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M K L LSFL + IF+    A  +V FDLS+AT+ +Y  FI+N R  LP   KVYDIP+L
Sbjct: 1   MVKCLVLSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIENFRATLPFSHKVYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKG 120
            ST+ DSRRFIL++L +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKG
Sbjct: 61  YSTISDSRRFILLNLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKG 120

Query: 121 TQQRTLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTS 180
           T++ TLPYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+
Sbjct: 121 TRKITLPYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTA 180

Query: 181 EAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQ 240
           EAARF+YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI P 
Sbjct: 181 EAARFKYIERHVARYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIKPT 240

Query: 241 GNRVQITNVTSNVVTQNIKLLLNIGAT 268
           G R Q+TNV S+VV  NIKLLLN  A+
Sbjct: 241 GERFQVTNVDSDVVKGNIKLLLNSRAS 267

[Close]

BLAST of CmoCh08G001130 vs. NCBI nr
Match: gi|132581|sp|P29339.1|RIP2_MOMBA (RecName: Full=Ribosome-inactivating protein momordin II; AltName: Full=rRNA N-glycosidase; Flags: Precursor)

HSP 1 Score: 313.9 bits (803), Expect = 5.3e-82
Identity = 167/267 (62.55%), Postives = 205/267 (76.78%), Query Frame = 1


Query: 1   MNKSLALSFLFLTIFLNTRPADANVRFDLSSATSSSYKTFIKNLREALPKDGKVYDIPVL 60
           M K L LSFL + IF+    A  +V FDLS+AT+ +Y  FI++ R  LP   KVYDIP+L
Sbjct: 1   MVKCLLLSFLIIAIFIGVPTAKGDVNFDLSTATAKTYTKFIEDFRATLPFSHKVYDIPLL 60

Query: 61  LSTVMDSRRFILIDLVNYDGQSITAAIDVLNVYIVAYSTGTVSYFFQQVPAQAPKLLFKG 120
            ST+ DSRRFIL+DL +Y  ++I+ AIDV NVY+VAY T  VSYFF++ P +A  +LFKG
Sbjct: 61  YSTISDSRRFILLDLTSYAYETISVAIDVTNVYVVAYRTRDVSYFFKESPPEAYNILFKG 120

Query: 121 TQQRTLPYTGNYENLQTAAKKLRENIELGLPALDSAITTLFHYNAEAAASALLVLIQTTS 180
           T++ TLPYTGNYENLQTAA K+RENI+LGLPAL SAITTLF+YNA++A SALLVLIQTT+
Sbjct: 121 TRKITLPYTGNYENLQTAAHKIRENIDLGLPALSSAITTLFYYNAQSAPSALLVLIQTTA 180

Query: 181 EAARFRYIELQIANNVGTKFKPSQTIISLENNWSALSKQIQIAKNKNGQFETPVILIDPQ 240
           EAARF+YIE  +A  V T FKP+  IISLEN WSALSKQI +A+N+ G+F  PV LI P 
Sbjct: 181 EAARFKYIERHVAKYVATNFKPNLAIISLENQWSALSKQIFLAQNQGGKFRNPVDLIKPT 240

Query: 241 GNRVQITNVTSNVVTQNIKLLLNIGAT 268
           G R Q+TNV S+VV  NIKLLLN  A+
Sbjct: 241 GERFQVTNVDSDVVKGNIKLLLNSRAS 267

The following BLAST results are available for this feature:

BLAST of CmoCh08G001130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RIP_CUCMO	9.8e-129	99.59	Ribosome-inactivating protein cucurmosin OS=Cucurbita moschata PE=1 SV=2	[more]
RIP2_MOMBA	3.3e-84	62.55	Ribosome-inactivating protein momordin II OS=Momordica balsamina PE=3 SV=1	[more]
RIP3_MOMCH	1.2e-83	62.17	Ribosome-inactivating protein beta-momorcharin OS=Momordica charantia GN=MAP30 P...	[more]
RIPT_TRIKI	7.1e-79	59.72	Ribosome-inactivating protein alpha-trichosanthin OS=Trichosanthes kirilowii PE=...	[more]
RIPS_TRIKI	2.3e-77	59.35	Ribosome-inactivating protein karasurin-C OS=Trichosanthes kirilowii PE=1 SV=2	[more]

BLAST of CmoCh08G001130 vs. TrEMBL


Match Name	E-value	Identity	Description
D0VWS7_CUCMO	1.1e-126	99.59	rRNA N-glycosidase OS=Cucurbita moschata PE=1 SV=1	[more]
W0LQW1_MOMCH	2.8e-82	62.55	rRNA N-glycosidase OS=Momordica charantia PE=2 SV=1	[more]
Q5PZ05_MOMCH	1.4e-81	62.17	rRNA N-glycosidase OS=Momordica charantia PE=3 SV=1	[more]
S6CNY4_MOMCH	1.8e-81	62.84	Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1	[more]
S6CNA9_MOMCH	4.0e-81	62.84	Ribosome inactivating protein (Fragment) OS=Momordica charantia GN=rip PE=4 SV=1	[more]

BLAST of CmoCh08G001130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh08G001130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|281185483\|sp\|P84531.2\|RIP_CUCMO	1.6e-126	99.59	RecName: Full=Ribosome-inactivating protein cucurmosin; AltName: Full=rRNA N-gly...	[more]
gi\|209156420\|pdb\|3BWH\|A	1.6e-126	99.59	Chain A, Atomic Resolution Structure Of Cucurmosin, A Novel Type 1 Rip From The ...	[more]
gi\|163867055\|gb\|ABY47624.1\|	1.8e-122	99.58	ribosome-inactivating protein [Cucurbita moschata]	[more]
gi\|574452326\|gb\|AHG25320.1\|	4.0e-82	62.55	ribosome-inactivating protein [Momordica charantia]	[more]
gi\|132581\|sp\|P29339.1\|RIP2_MOMBA	5.3e-82	62.55	RecName: Full=Ribosome-inactivating protein momordin II; AltName: Full=rRNA N-gl...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001574	Ribosome_inactivat_prot
IPR016138	Ribosome_inactivat_prot_sub1
IPR016139	Ribosome_inactivat_prot_sub2
IPR017988	Ribosome_inactivat_prot_CS
IPR017989	Ribosome_inactivat_1/2

Vocabulary: **Biological Process**
Term	Definition
GO:0017148	negative regulation of translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0030598	rRNA N-glycosylase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0009405	pathogenesis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030598	rRNA N-glycosylase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G001130.1	CmoCh08G001130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001574	Ribosome-inactivating protein	PFAM	PF00161	RIP	coord: 33..221 score: 1.6
IPR001574	Ribosome-inactivating protein	unknown	SSF56371	Ribosome inactivating proteins (RIP)	coord: 423..487 score: 3.01E-14coord: 25..265 score: 2.23
IPR016138	Ribosome-inactivating protein, subdomain 1	GENE3D	G3DSA:3.40.420.10		coord: 25..183 score: 2.9E-57coord: 423..487 score: 5.1
IPR016139	Ribosome-inactivating protein, subdomain 2	GENE3D	G3DSA:4.10.470.10		coord: 184..264 score: 1.2
IPR017988	Ribosome-inactivating protein conserved site	PROSITE	PS00275	SHIGA_RICIN	coord: 176..192 scor
IPR017989	Ribosome-inactivating protein subgroup	PRINTS	PR00396	SHIGARICIN	coord: 82..97 score: 5.1E-34coord: 172..192 score: 5.1E-34coord: 143..157 score: 5.1E-34coord: 204..221 score: 5.1E-34coord: 35..48 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G001130	CmaCh17G005680	Cucurbita maxima (Rimu)	cmacmoB378
CmoCh08G001130	CmaCh08G001070	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G001130	ClCG08G004120	Watermelon (Charleston Gray)	cmowcgB810
CmoCh08G001130	Cp4.1LG17g10070	Cucurbita pepo (Zucchini)	cmocpeB851
CmoCh08G001130	Cp4.1LG12g04830	Cucurbita pepo (Zucchini)	cmocpeB842
CmoCh08G001130	CsaV3_6G003670	Cucumber (Chinese Long) v3	cmocucB1061
CmoCh08G001130	Cla97C08G147410	Watermelon (97103) v2	cmowmbB907
CmoCh08G001130	Bhi04G001651	Wax gourd	cmowgoB1114
CmoCh08G001130	CsGy6G003380	Cucumber (Gy14) v2	cgybcmoB860
CmoCh08G001130	Carg04936	Silver-seed gourd	carcmoB0119

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh08G001130	CmoCh17G005500	Cucurbita moschata (Rifu)	cmocmoB323

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G001130	Cucumber (Gy14) v2	cgybcmoB430
CmoCh08G001130	Silver-seed gourd	carcmoB0309
CmoCh08G001130	Cucumber (Chinese Long) v3	cmocucB1043
CmoCh08G001130	Cucumber (Chinese Long) v3	cmocucB1065
CmoCh08G001130	Watermelon (97103) v2	cmowmbB899
CmoCh08G001130	Cucurbita moschata (Rifu)	cmocmoB318
CmoCh08G001130	Cucurbita maxima (Rimu)	cmacmoB372
CmoCh08G001130	Wild cucumber (PI 183967)	cmocpiB901
CmoCh08G001130	Wild cucumber (PI 183967)	cmocpiB911
CmoCh08G001130	Cucumber (Chinese Long) v2	cmocuB888
CmoCh08G001130	Cucumber (Chinese Long) v2	cmocuB897
CmoCh08G001130	Melon (DHL92) v3.5.1	cmomeB803
CmoCh08G001130	Watermelon (Charleston Gray)	cmowcgB802
CmoCh08G001130	Watermelon (97103) v1	cmowmB864
CmoCh08G001130	Cucurbita pepo (Zucchini)	cmocpeB838
CmoCh08G001130	Bottle gourd (USVL1VR-Ls)	cmolsiB800
CmoCh08G001130	Bottle gourd (USVL1VR-Ls)	cmolsiB822