CmoCh07G013180 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G013180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S ribosomal L35a-1-like protein
Location	Cmo_Chr07 : 7383557 .. 7387025 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATTTAGCTATCAATCACTTATTTGAAGTGTTTAAGTGTCATGATGCAACCGAGAAGAATGTTGCATCATTTATCACACCAAGAATAGCAGGCAAGATTGTCGAGTTAGGTAAGAGATTGGTAGATGGGGTCATAGACCATAACCTTAAAAGTTAGGGTTCTGACGTGAGTTTTGACCTGCTATTTTGGGGTTAAGTTTGTATAAGTTATATGTGAGAGCTTACAAAATTTGGTGTTAATCGGACGTCAGATTATTAGGATTTATATCATAAAACCTCGTAGTTATTATTAGGTTTTTAATAATAATATTGATTGTTTATTTGTAGTATAATGTTACCTAAGGTATGAAAATCTAAAGTTCTTATAATTTTGAACTGTATATGTCTGATATACACGAGGATTATATTGAAGAAATAACCTAAAATGTTATAGCATACGAATAATACTCGGTGGCTTATCTCGATAACACTATTGATGCAACCCACATTTTAATTATTTTAAATAATTTGATCCAAATTATTTCATTGACCACACGTAAGTGGGGATATGTTATACAATCAGTTTGTATAAGACTCTGTCATGAAATATTTAATCTTTCTTTATAAATTTGTTAACCGAGAAAGTTTATATTTCACAAAATGATTATATGCGACCTAATCTTAACATCGAGTGAATTATGAGATTTTGCCCATAAAACTTTTATTTAAGTTGCATAGGTGAAAATAACTTTTATAATCGATTCTTGACCTTTAAAATATATAACATTTTAAATTTAAATTAATAGTGTATTTTGATATTACCTCATCAGCGACGGTTAATTTTTGATTTCTAACGTCCATTTCTACCGTTTTCATTTGAAATTAAATTAAATTACAAGTCTAATTTCTAAATTTTATTTCTTTAACAAATTTATACTTATATTAAAAAAATATTTAATAAATTCCTAAGCTTAAAATTTAAATAGTTAAAACTCTTTTGGAGAAGTTGAAAAAAAATAATAAAAAAATAAACATCGTATTACCCGACAGAGAAACCCTAGAAGTGCTTCAAATCATTTTGGCCCTCAACCTCCACTATAAAAGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGGTGATTATTCCTCTAAGATTTCCTTTTTTTTTCCTTCTCCACAGCATTTACATTTGACTACGGATCTCAATTCTTAGTTTCTTGCCTTGCAGTGGTCGTTTTCTTGAACCTTAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGGTCTCTTTCCTGAGCCCTAGATCGACCTGTTTTGATTGTTTGATTTTATTTGTTCTTCACAATGCTGTGCTAATCTTTTGTGTTTGTTTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTAATTGGTTTTTCTTTGATAATGGAATAATCGTTATCTTTTAGTGATGCGTAGTATGTGATTGGAAAACAGAAAATGGTGCAATAGAGTACTCTTTAATGTGGTGCGATGCCGAGAAAATGAACGAAACTGGAATTGAAATATGCGTTAGGTTTAGTTGTAAGTTACTGAGGGATGTTGTAGTTTGTGAGGGAGCTAAGAATGTGCGGTTGGTGTTTAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGTAAAATGGAATGATTTTGCTGTTACTTCATATACTTTCAAGGATTGTAAATTGGGGATGTGTTTTCTGATTGAATTACTGGACAATTTTGCAGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGAGGTACACACCCGGCTTCCATTGTTTTAGTCTTTAAAATTGTTAGTTACCATTTGCATTTAGTGTTGTATGAAGGAAAAAATCATCCATGCTGTTCATCTTAATCATGTGATAATAACACAGCATAACTTGATATTGCATACTTCGTTGCTATTCATTTCCGACATTCAATTTTTGTTTGCACTGTTAATAGTTCGTTTGTGACATAATCCTGTGATCATTGTGTCACTTTAATTTGTACTTCATTAACTTGCTGGACTATGTTCCTCAATCTTCGTTTTTCTTTTCTGTTGTTGGATGTTGTCATCTTCCTTTGTCTGTTTATTCCAAAATGATTATATGTGGTTTGTTCTGACTCCTCAATCTCCAAATGGAGCATCATATTGCAATCAGAAATTCGTGAGGCATCTTTATGCGTTCTTCCCATAGTGTAGTGCTTCTTTTTTTATAGAGTTGAAGTACTTTGATGTAGAATGTTTTAAGAATGAAGTTTGTTTCAATTTTGAACTAAAAAAATGTTTGTTTTAATTTTTATGTTCATCATGTTTTCAACTTCTATGTTTTTATCCAATATTCTATCCTGTTACATAGAGTAGGCTCGGGTCGAACATTCTTTTGGAATCCATTCCATCAATCAATAAAATAGATACTCAATGTCTTTGTATAAACGAGACACTCTATCACATTTGGTCCTCACTGTAGGAATCCTAGTTTTACTTCCAGACCGATGTATAAGTTTTTTTGTGAGTCCATTTCCTCACAATTCACTTATTCCAGTCCCACCACTTACAGATCAGATGTCTTTCACTCATCTATTAGTACCTTTGTAGCCCTGGTTCTATCCACCTTTGTGTCTCCTACAGTTCTAAGTTGCACTTCATATGAACTGTTCGAAGCCAGATTCGATTCTCAGTTGTCTTGGATCAATCTATAGCTTTGTCTACTCATTTCTTGAATAATAACTTTATCTTTTATTTTTCCTCCCACGCATATCTTTCAACATCACGAATCAAGCTGTCCATGAAATGTAGATTCATTTCCCGTACTGATTTTAGTTCATTTGCGTAATTGTCTGTGTCGTGTTCGATCCATATTAGAAATCCGTTTGTGCATTTAGTCACGTCTTCTCTTCAACGCATTTATCTATGATGATTTTGAAACCCCGTTTCTGATATCTCTCCTTTTGTTTTATATTTTGTTTGCAGTTCCTCTGATGAGCTAGCTAGAGGTCAGGTTTCATTTCTTTGTGGACTTGGATGGAACAATATTTTTCTTTTACTTTCTTCCTTCTGGACCCAATGTTTAGGTGATGATGTTTTCATGTAAAACTTGACTAAATTTTCGACGTTCATTATGGAATATTACTTTCAATTTTGACCGAGCTTCATATTAAGGTTGAGTTAAAATGGTAGTCACTTAAATTTAGACGGATATTTG

mRNA sequence

ATGATTGATTTAGCTATCAATCACTTATTTGAAGTGTTTAAGTGTCATGATGCAACCGAGAAGAATGTTGCATCATTTATCACACCAAGAATAGCAGGCAAGATTGTCGAGTTAGGTAAGAGATTGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGAGTTCCTCTGATGAGCTAGCTAGAGGTCAGGTTTCATTTCTTTGTGGACTTGGATGGAACAATATTTTTCTTTTACTTTCTTCCTTCTGGACCCAATGTTTAGGTGATGATGTTTTCATGTAAAACTTGACTAAATTTTCGACGTTCATTATGGAATATTACTTTCAATTTTGACCGAGCTTCATATTAAGGTTGAGTTAAAATGGTAGTCACTTAAATTTAGACGGATATTTG

Coding sequence (CDS)

ATGATTGATTTAGCTATCAATCACTTATTTGAAGTGTTTAAGTGTCATGATGCAACCGAGAAGAATGTTGCATCATTTATCACACCAAGAATAGCAGGCAAGATTGTCGAGTTAGGTAAGAGATTGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGA

Homology

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BLAST of CmoCh07G013180 vs. Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 94/112 (83.93%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of CmoCh07G013180 vs. Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-50
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of CmoCh07G013180 vs. Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-27
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 79  ERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGT 138
           E  RLYV+G  L Y+RSK    P  SLI+IEGV T +E  +Y GKR+AY+Y+A  +  G+
Sbjct: 3   ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGS 62

Query: 139 HYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
             R +WGKV+R HGNSG+VRA F++NLP K+ G  VR+F+YPSNI
Sbjct: 63  KIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107

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BLAST of CmoCh07G013180 vs. TrEMBL
Match: A0A0D2VTL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G278900 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. TrEMBL
Match: A0A0B0N9V3_GOSAR (60S ribosomal L35a-1-like protein OS=Gossypium arboreum GN=F383_12852 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 51  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 110

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 111 KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 162

[Close]

BLAST of CmoCh07G013180 vs. TrEMBL
Match: I3NML8_HEVBR (60S ribosomal protein L35aA OS=Hevea brasiliensis GN=RPL35aA PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. TrEMBL
Match: A0A061ESF1_THECC (Ribosomal protein L35Ae family protein isoform 1 OS=Theobroma cacao GN=TCM_021780 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.1e-53
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVN+KEEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNSKEEVGWYCGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+RAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. TrEMBL
Match: S8D037_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02083 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.0e-53
Identity = 100/115 (86.96%), Postives = 110/115 (95.65%), Query Frame = 1


Query: 69  AAAMVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYI 128
           ++AMVKG +GER+RLYVRGT+LGYKRSKSNQYP TSLIQIEGVNT+EEVAWY GKR+AYI
Sbjct: 1   SSAMVKGRQGERIRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTQEEVAWYLGKRMAYI 60

Query: 129 YKAKVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           YKAKVK+NGTHYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMG KVRVFMYPSNI
Sbjct: 61  YKAKVKKNGTHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGSKVRVFMYPSNI 115

[Close]

BLAST of CmoCh07G013180 vs. TAIR10
Match: AT1G07070.1 (AT1G07070.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 204.1 bits (518), Expect = 7.2e-53
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. TAIR10
Match: AT1G74270.1 (AT1G74270.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 204.1 bits (518), Expect = 7.2e-53
Identity = 94/112 (83.93%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. TAIR10
Match: AT1G41880.1 (AT1G41880.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 200.7 bits (509), Expect = 7.9e-52
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of CmoCh07G013180 vs. TAIR10
Match: AT3G55750.1 (AT3G55750.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-51
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of CmoCh07G013180 vs. NCBI nr
Match: gi|659083091|ref|XP_008442180.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 8.5e-56
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. NCBI nr
Match: gi|778695048|ref|XP_011653915.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 3.2e-55
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. NCBI nr
Match: gi|728828408|gb|KHG07851.1| (60S ribosomal L35a-1 -like protein [Gossypium arboreum])

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 51  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 110

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 111 KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 162

[Close]

BLAST of CmoCh07G013180 vs. NCBI nr
Match: gi|823243288|ref|XP_012454296.1| (PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii])

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CmoCh07G013180 vs. NCBI nr
Match: gi|502112306|ref|XP_004494288.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cicer arietinum])

HSP 1 Score: 215.3 bits (547), Expect = 8.8e-53
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 1


Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NGTHYRC+WGKV+R HGNSGIVRAKFKSNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KVKKNGTHYRCLWGKVTRPHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI 112

The following BLAST results are available for this feature:

BLAST of CmoCh07G013180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R35A3_ARATH	1.3e-51	83.93	60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1	[more]
R35A1_ARATH	1.3e-51	83.04	60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1	[more]
R35A2_ARATH	1.4e-50	84.68	60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1	[more]
R35A4_ARATH	1.8e-50	83.78	60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2	[more]
RL33B_YEAST	1.3e-27	55.24	60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of CmoCh07G013180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2VTL7_GOSRA	2.8e-53	90.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G278900 PE=4 SV=1	[more]
A0A0B0N9V3_GOSAR	2.8e-53	90.18	60S ribosomal L35a-1-like protein OS=Gossypium arboreum GN=F383_12852 PE=4 SV=1	[more]
I3NML8_HEVBR	2.8e-53	90.18	60S ribosomal protein L35aA OS=Hevea brasiliensis GN=RPL35aA PE=2 SV=1	[more]
A0A061ESF1_THECC	6.1e-53	90.18	Ribosomal protein L35Ae family protein isoform 1 OS=Theobroma cacao GN=TCM_02178...	[more]
S8D037_9LAMI	8.0e-53	86.96	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02083 PE=4 SV=1	[more]

BLAST of CmoCh07G013180 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G07070.1	7.2e-53	83.04	Ribosomal protein L35Ae family protein	[more]
AT1G74270.1	7.2e-53	83.93	Ribosomal protein L35Ae family protein	[more]
AT1G41880.1	7.9e-52	84.68	Ribosomal protein L35Ae family protein	[more]
AT3G55750.1	1.0e-51	83.78	Ribosomal protein L35Ae family protein	[more]

BLAST of CmoCh07G013180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083091\|ref\|XP_008442180.1\|	8.5e-56	95.54	PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo]	[more]
gi\|778695048\|ref\|XP_011653915.1\|	3.2e-55	94.64	PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus]	[more]
gi\|728828408\|gb\|KHG07851.1\|	4.0e-53	90.18	60S ribosomal L35a-1 -like protein [Gossypium arboreum]	[more]
gi\|823243288\|ref\|XP_012454296.1\|	4.0e-53	90.18	PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]	[more]
gi\|502112306\|ref\|XP_004494288.1\|	8.8e-53	91.07	PREDICTED: 60S ribosomal protein L35a-1-like [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001780	Ribosomal_L35A
IPR009000	Transl_B-barrel_sf
IPR018266	Ribosomal_L35Ae_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G013180.1	CmoCh07G013180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001780	Ribosomal protein L35A	PRODOM	PD012670		coord: 85..176 score: 3.0
IPR001780	Ribosomal protein L35A	PANTHER	PTHR10902	60S RIBOSOMAL PROTEIN L35A	coord: 67..183 score: 4.0
IPR001780	Ribosomal protein L35A	PFAM	PF01247	Ribosomal_L35Ae	coord: 83..177 score: 1.8
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 83..177 score: 2.83
IPR018266	Ribosomal protein L35Ae, conserved site	PROSITE	PS01105	RIBOSOMAL_L35AE	coord: 145..166 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G013180	Cucsa.357640	Cucumber (Gy14) v1	cgycmoB0975
CmoCh07G013180	CmaCh03G001220	Cucurbita maxima (Rimu)	cmacmoB674
CmoCh07G013180	Cla011616	Watermelon (97103) v1	cmowmB830
CmoCh07G013180	MELO3C008974	Melon (DHL92) v3.5.1	cmomeB795
CmoCh07G013180	ClCG04G001550	Watermelon (Charleston Gray)	cmowcgB771
CmoCh07G013180	CSPI04G20530	Wild cucumber (PI 183967)	cmocpiB858
CmoCh07G013180	Lsi01G019680	Bottle gourd (USVL1VR-Ls)	cmolsiB780
CmoCh07G013180	Cp4.1LG10g12120	Cucurbita pepo (Zucchini)	cmocpeB803
CmoCh07G013180	Cp4.1LG19g00920	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G013180	MELO3C008974.2	Melon (DHL92) v3.6.1	cmomedB897
CmoCh07G013180	CsaV3_4G030970	Cucumber (Chinese Long) v3	cmocucB1001
CmoCh07G013180	Cla97C04G069510	Watermelon (97103) v2	cmowmbB869
CmoCh07G013180	CsGy4G019340	Cucumber (Gy14) v2	cgybcmoB539
CmoCh07G013180	Carg12704	Silver-seed gourd	carcmoB0395
CmoCh07G013180	Carg25741	Silver-seed gourd	carcmoB1159

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G013180	CmoCh03G001340	Cucurbita moschata (Rifu)	cmocmoB461

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G013180	Wax gourd	cmowgoB1068
CmoCh07G013180	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G013180	Cucumber (Chinese Long) v2	cmocuB849
CmoCh07G013180	Melon (DHL92) v3.5.1	cmomeB790